mRNA_C-linearis_contig9.16590.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16590.1
Unique NamemRNA_C-linearis_contig9.16590.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 559 bits (1440), Expect = 4.140e-191
Identity = 327/503 (65.01%), Postives = 366/503 (72.76%), Query Frame = 3
Query:  195 MARSATPD--AARLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPAKKGAIVRMLERGPAFRARSFLWPPGTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCAVAGDAGDACAAGDAGGGEISAAGAAA-AGGGCADGDXXXXXXXEGGDDDGAADVNSLPGRTSKTPLGVRIYRAKSE-AFLV 1691
            MARS T    AA+LL  +RQRNEAGVE+ LAAG S+DGSSE DWRP++AAAASG V MA+ LI + AN+DLGSL+DLRCSDGLEVLGKGVRALHVAINHYH+DVFR+LL+AGA+PDSANGKGLTPLMLTCILED  RG +RA+MARE               KTALGFAAAR Q DLIDILL +APTTLNRATPDGLTPLYAAAMSGK +AV+HLL AGA+QPPASAEKDMCPLVAAVRENH++VV+VLL+D+GM AI G + IPRAVGAAA+ARKGRA IV+MLL AEG ER+ HWARC +KEDPVLHCAVSFGNISA RVLLAAGADETAEN +GR AREV+GFNAPSLQRDPAKKGAIVRML RGPA+RARS+ WP  T  A                                  V    G +GDACA     GG+         A G  A+GD            D   D+ +  G  S  PLGVRIYR KS  AFLV
Sbjct:  109 MARSVTKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWP-ATARAYTAGHTCAAAATTAAPGACGAAAASSDYVRGSSFV----GGSGDACAVAPPRGGDAXXXXXXREADGARANGDTCGGRASV----DNGTDLPAAHGSGSSAPLGVRIYRPKSRNAFLV 602          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 558 bits (1439), Expect = 4.640e-191
Identity = 336/503 (66.80%), Postives = 378/503 (75.15%), Query Frame = 3
Query:  195 MARSATPD--AARLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPAKKGAIVRMLERGPAFRARSFLWPPGTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCAVAGDAGDACAAGDAGGGEISAAGAAA-AGGGCADGDXXXXXXXEGGDDDGAADVNSLPGRTSKTPLGVRIYRAKSE-AFLV 1691
            MARSAT    AA+LL  +RQRNEAGVE+ LAAG S+DGSSE DWRP++AAAAS KV MAE LI + A++DLGSL+DLRCSDGLEVLGKGVRALHVAINHY++DVFR+LL+AGA+PDSANGKGLTPLMLTCILED  RG +RA+MARE               KTALGFAAAR Q +LIDILL +APTTLNRATPDGLTPLYAAAMSGK +AV+HLL AGA+QPPASAEKDMCPLVAAVRENH++VV+VLL+D+GM+AIGG++ IPRAVGAAA+ARKGRA IV+MLL AEG ER+ HWARC +KEDPVLH AVSFGNISA RVLLAAGADETAEN +GR AREV+GFNAPSLQRDPAKKGAIVRMLERGPA+RARS+ WP  T  A                 XXXXXXX          V    G +GDACA     G E     A   A G CA+GD        G   D   D+ +  G  S  PLGVRIYR K   AFLV
Sbjct:  101 MARSATKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAWP-ATARAYTAGHTCAAAATTAAPGXXXXXXXSSNDVCGSGFV----GGSGDACAVARPRGHEPGDGCAVREADGACANGDDCGG----GASVDNGTDLPAAHGGGSSAPLGVRIYRPKKRNAFLV 594          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D8LSK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 8.590e-66
Identity = 159/379 (41.95%), Postives = 223/379 (58.84%), Query Frame = 3
Query:  228 LLQSVRQRNEAGVEKALAAGCSIDGS--SEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYH---LDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAP-TTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAI-PRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARC-CFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPAKKGAIVRMLERGPAFRARSFLWPPGTGA 1340
            LL  V+  N+ GVE+ LAAG SIDGS  S +++ P++ AAA G   M +FL+ KGA+++  +               G RA+HVA++  +   LD  R L++AGA+ +  N +G TPLM+ C ++    GAER  +ARELLKAG D  L D  G+ AL +AA      LI  LL +   +TLN AT DG TPL  A        V+ LL AGA Q         CP  +A    +  ++++L S++GM A+GG  A+ P ++  A A R+G+A I+++LL AEG+ERQ HWAR       P+++ A ++G ++  +VLLAAGADET  + +G  A EVIG   PS   DP +  AI R L+RGPA+RARS+ WP G  A
Sbjct:    9 LLVEVQNGNKRGVERYLAAGASIDGSPHSGEEFPPVVFAAAVGSASMIKFLVDKGADINSSTWRP-------GAFPSGSRAIHVAVSSGYAGALDALRELIKAGADLNGRNYQGCTPLMMACRVDK--EGAERVELARELLKAGVDTTLVDADGRAALHYAAYSGNEALIQALLSKGSLSTLNLATQDGKTPLCVAVEFVHCGVVSLLLSAGASQRGLQEGNYPCPFRSAAALGYESILRILCSERGMDAVGGGAAVLPNSL--ACATRRGKARILRLLLAAEGQERQEHWARRRLVLGRPLVYLAAAYGILANVKVLLAAGADETETDPDGYAAPEVIGGQLPSGTLDPLEAAAIGRELQRGPAYRARSWAWPVGEDA 376          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 6.940e-64
Identity = 143/368 (38.86%), Postives = 215/368 (58.42%), Query Frame = 3
Query:  225 RLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNA-PSLQRDPAKKGAIVRMLERGPAFRARSFLWP 1325
            RLL  V + N +GV+K LA G ++DGS E ++ P++ AA +G   M + LI+KGA+L+  +               G RA+H AI+  +     VLLEAGA+ +S +G G TPLMLT  L D G     A++AREL K GA P + +  G +A+  AA    ++++ ++L   P+ LN     G TP+  AA+ G+  AV HLL AGA       ++    ++ A    H ++V+++L + G+  +GG  AIP ++G A   R+ +  I++ML+ AEGEE +R WA C  ++   LH A ++ ++ A  VLL+AGA ET  N  G+ A E +G    P  +R P K+ A+VRML+RGPA+RARS+ WP
Sbjct:   10 RLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPPIMGAARNGNAAMLKLLISKGADLETEAR-----------FPAGSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLMLTA-LADTG-----ALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASD--LGVDEQNAAILWACDGGHPRMVRMML-EHGINRVGGLGAIPNSIGVAVQGRQAK--ILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAIHVLLSAGARETLPNGYGKLASEEVGIALRPPARRSPRKEAAVVRMLQRGPAYRARSYGWP 355          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 7.480e-51
Identity = 124/328 (37.80%), Postives = 186/328 (56.71%), Query Frame = 3
Query:  345 SGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFN-APSLQRDPAKKGAIVRMLERGPAFRARSFLWP 1325
            +G   M + LI+KGANL+  +               G RA+H AI+  +     VLLEAGA+ +S +G G TPLMLT  L D G     A++AREL K GA P + +  G +A+  AA    ++++ ++L   P+ LN     G TP+  AA+ G+  AV HLL AGA       ++    +  A    H ++V+++L + G+  +GG  AIP ++G A   R+ +  I++ML+ AEGE+ +R WA C  ++   LH A ++ ++    VLL+AGA ET  N  G+ A E +G    P  +R P K+ A+VRML+RGPA+RARS+ WP
Sbjct:  105 NGNTAMLKLLISKGANLETEAR-----------FPAGSRAIHAAISGENPTALCVLLEAGADFNSRDGAGETPLMLTA-LADTG-----ALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSVLNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASD--LGVDEQNAAIFWACDGGHPRMVRMML-EHGINRVGGLGAIPNSIGVAVQGRQAK--ILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVMHVLLSAGARETLPNRYGKLAGEEVGIALGPPARRSPRKEAAVVRMLQRGPAYRARSYGWP 410          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.520e-47
Identity = 141/372 (37.90%), Postives = 202/372 (54.30%), Query Frame = 3
Query:  225 RLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLD-LGSLDDLRCSDGLE---VLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGK-TALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCFKED-PVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPAKKGAIVRMLERGPAFRARSFLW 1322
            RLL  V + +  G  + L AG + DG+SE    PL  AA  G++ + + LI  GA+LD   SLD  + +DG         G   LH A+   +LD  R+LL AGA+P+ A+GKG TPLM+TC+     R     + A                   TAL  AA  +  DL+ +LL +AP+T+N     G+T L  AA  G + AV+ LL AGA+  P+     +  L+ AV   H +VV+VLL D+G++A+GG  A+  A+  +   R  R  I+QMLL  EGE+++  WAR    +  P LH A +  ++ AA +LL AGADE   N   + A   +G   P+ +++P    A+ R+LERGPAFRARS+ W
Sbjct:    9 RLLHHVEKGSLQGAIEMLKAGANADGTSEAATSPLFLAANRGRIDILKLLIDNGADLDGTSSLD--KFADGFTGNLPFEGGTTPLHGALAGENLDALRLLLLAGADPNLADGKGCTPLMMTCLKYF--RAKNYVLTAXXXXXXXXXXXXXXXXXXXTALHVAATFNAPDLLGLLLSRAPSTVNLPNKKGVTALCYAASEGMEVAVSCLLSAGARDNPSLFANGIGSLLIAVELGHEQVVRVLL-DRGVQAVGGELAMSYALRRSILKRFPR--ILQMLLDVEGEQKRVKWARLRHTDGTPALHLAAACESLVAASILLQAGADEGTANGLDKGASCCVGAALPANKKNPDTSAAVCRLLERGPAFRARSWAW 373          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: A0A6H5L2Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q3_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 9.630e-42
Identity = 134/380 (35.26%), Postives = 208/380 (54.74%), Query Frame = 3
Query:  225 RLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGL-----TPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCP--LVAAVRENHRKVVKVLLSDQGMRAIGGSEAI-PRAVGAAAAARKGRAGIVQMLL-LAEGEERQRHWARCCFKEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPA---KKGAIVRMLERGPAFRARSFLWPP 1328
            RLL+  ++ +   V+ A+AAG    GSS    RPL+ A+ SG V +  FL+  GA ++  +  D    D    LG  +RA H A+    LD   VLL+AGA  D+ N +G T LM  C+ +          MA+ LL AGADP + D +G+ AL  AAA+   ++ID+LL    ++L++     +     TPL +A  S + +AVAHLL  GA+   A+ +++     L  AV +N   +V+VL  + G+ ++GG+  + P ++  A+AA+ GR  ++++LL +  G+    +WA       P+L+ A  +  +    VLLAAGADE   ++E + A ++IG    S  +  +    K AI R L RGPA+RARS+ WPP
Sbjct:    9 RLLRGAQKGDLPAVQAAIAAGADPSGSSNSRLRPLMVASGSGSVEVVNFLLQNGAEMEHQTWGD----DDHRFLG--MRATHWAVTSGKLDTLLVLLKAGAVYDAVNAQGETCLMNACMTD--ASPPTCVAMAKALLDAGADPLIEDREGQVALHHAAAQGNPNMIDLLLQAKGSSLSKKLLSHVSRWEHTPLQSALESNQVQAVAHLLSLGAR---ATVDREGRGNLLRRAVVKNSEPIVRVLF-EAGLESVGGAARVMPDSL--ASAAKAGRTRLLKLLLTVGRGDRTTGYWANYYVWGGPLLNVAAGYATVDCVGVLLAAGADERVPDDERQTAGDMIGDLLASGSKSASFRSDKAAIRRTLLRGPAYRARSWTWPP 374          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D8LMA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA6_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.300e-27
Identity = 120/396 (30.30%), Postives = 177/396 (44.70%), Query Frame = 3
Query:  264 VEKALAAGCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGK-------GVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGA--ERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWAR---CCFKED------------------------PVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQRDPAKKGAIVRMLERGPAFRARSFLWPPGTGAA 1343
            V + LAAG S+  S E++  P+  AAA G V + + L+  GA ++      ++ SDG             G  ALH+A     +    VLL+ GANP+S++ +G+TP+M+ C      R +   +A M   LLKAGAD  L D  G  A+ FAA+  +  ++++LL +AP+TLN AT  G TPL AA                                                  G  A+GG  AI  A+    + + G   ++ +LL  EG+E+Q  WA     C  E                         P+LH A  +  I A RVLL+AGA     + +G+ A + IG      +R+ + + A+  +L +GPAFRARS+ WP    AA
Sbjct:   23 VTRMLAAGASLRASREENIHPMAVAAAHGHVHIIKALVRSGAEIEATCTSRVK-SDGYCCETNPNWPYLNGFTALHIAAILGKVRAMLVLLQLGANPNSSDTRGVTPVMMACQGVRCCRPSTPNQAEMLNSLLKAGADVELEDGTGLLAIHFAASHCETQVVELLLSKAPSTLNHATHKGFTPL-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGFEAVGGKPAIADAM--RTSVQYGHIDMLTILLNVEGDEKQEVWANQFVYCSHETVDVGLAPARDFPSTHAIMAIAFGCPLLHTAAKYCAIPAIRVLLSAGALAGKADYQGKVAEDAIGVY--HHERNGSVEAAVRALLLKGPAFRARSWAWPATMNAA 412          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.270e-20
Identity = 103/326 (31.60%), Postives = 151/326 (46.32%), Query Frame = 3
Query:  285 GCSIDGSSEQDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEV------LGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGA---ERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYAAAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSDQGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCF---KED------------------PVLHCAVSFGNISAARVLLAAGA 1172
            G S+    +   RP+  A   G + + + L+A GA+ +     D    DG            G  AL++A    +     VLL+ GANP++ +  G TP+M+TC     G G+    +  M R LLKAGAD A+ +  G  A+  AA R    ++ +LL  AP+TLN AT +GLTPL AAA  G +  ++ L   GA      A   +  L  AV       V+ LL + G+ A+GG   I  A+    +   G    ++MLL   GE++Q  WA+      ++D                  P+LH A    +I A  VLL+AGA
Sbjct:    5 GASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSD---KDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTC-----GTGSVTSTKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGITALHKAVIVGMGTSVRFLL-ENGLDAVGGLPGIAEAI--RISVWFGCIDGLEMLLNVHGEKKQEFWAKHYVFGVQDDSLLGSVPFSITAILCEWYPILHYAAKHYSIPALHVLLSAGA 319          
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Match: A0A6H5JDE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.090e-15
Identity = 77/217 (35.48%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  207 ATPDAARLLQSVRQRNEAGVEKALA-AGCSIDGSSE--QDWRPLLAAAASGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHLDVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAGADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNR-ATPDGLTPLYAAAMSGKDEAVAHLLKAG 845
            AT + A+LL  V   +  GV+K L  AG S++G+    +D   L+     G +R+AEFLIA+GANL+   L+D+    G   + KG RALH++ +    ++  VLL+AGA PD+ +  G TPLMLT                                GK  L FA     ID    LL  AP  LN  A    +TPLY AAM G  +   H  K G
Sbjct:   11 ATFNDAQLLHKVVNGDLLGVKKELVNAGVSVNGNPRLLRDIT-LILTTVKGHIRIAEFLIARGANLESACLEDVVNEIGEMSVRKGTRALHLSSSP---EITSVLLKAGACPDATDADGCTPLMLTTK-----------------------------DGKMTLHFAVGAGNIDAASCLLDAAPEKLNHPALECHITPLYFAAMGGPGQTKVHSTKVG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSC7_9PHAE4.140e-19165.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI4.640e-19166.80Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LSK4_ECTSI8.590e-6641.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JK53_9PHAE6.940e-6438.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4M4_ECTSI7.480e-5137.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDZ2_ECTSI6.520e-4737.90Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L2Q3_9PHAE9.630e-4235.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMA6_ECTSI1.300e-2730.30Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LMA9_ECTSI1.270e-2031.60Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JDE9_9PHAE7.090e-1535.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1647440..1649199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score566.6
Seed ortholog evalue1.1e-158
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_002000.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size1709
Cds size1515
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16590.1prot_C-linearis_contig9.16590.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1647634..1649199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.377727-UTR-C-linearis_contig9:1647439..16476331622930738.377727-UTR-C-linearis_contig9:1647439..1647633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1647440..1647633 +
1690881223.672001-UTR-C-linearis_contig9:1647439..16476331690881223.672001-UTR-C-linearis_contig9:1647439..1647633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1647440..1647633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.4037027-CDS-C-linearis_contig9:1647633..16490501622930738.4037027-CDS-C-linearis_contig9:1647633..1649050Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1647634..1649050 +
1690881223.685511-CDS-C-linearis_contig9:1647633..16490501690881223.685511-CDS-C-linearis_contig9:1647633..1649050Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1647634..1649050 +
1622930738.422866-CDS-C-linearis_contig9:1649101..16491991622930738.422866-CDS-C-linearis_contig9:1649101..1649199Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1649102..1649199 +
1690881223.6982179-CDS-C-linearis_contig9:1649101..16491991690881223.6982179-CDS-C-linearis_contig9:1649101..1649199Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1649102..1649199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16590.1

>prot_C-linearis_contig9.16590.1 ID=prot_C-linearis_contig9.16590.1|Name=mRNA_C-linearis_contig9.16590.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=505bp
MARSATPDAARLLQSVRQRNEAGVEKALAAGCSIDGSSEQDWRPLLAAAA
SGKVRMAEFLIAKGANLDLGSLDDLRCSDGLEVLGKGVRALHVAINHYHL
DVFRVLLEAGANPDSANGKGLTPLMLTCILEDPGRGAERAIMARELLKAG
ADPALADFQGKTALGFAAARSQIDLIDILLLQAPTTLNRATPDGLTPLYA
AAMSGKDEAVAHLLKAGAQQPPASAEKDMCPLVAAVRENHRKVVKVLLSD
QGMRAIGGSEAIPRAVGAAAAARKGRAGIVQMLLLAEGEERQRHWARCCF
KEDPVLHCAVSFGNISAARVLLAAGADETAENNEGRWAREVIGFNAPSLQ
RDPAKKGAIVRMLERGPAFRARSFLWPPGTGAAGTAAAAAAAAAAAAAAA
AAGDADDTCANDACGNDVCAVAGDAGDACAAGDAGGGEISAAGAAAAGGG
CADGDGDACACGEGGDDDGAADVNSLPGRTSKTPLGVRIYRAKSEAFLVR
GASR*
back to top

mRNA from alignment at C-linearis_contig9:1647440..1649199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16590.1 ID=mRNA_C-linearis_contig9.16590.1|Name=mRNA_C-linearis_contig9.16590.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1760bp|location=Sequence derived from alignment at C-linearis_contig9:1647440..1649199+ (Chordaria linearis ClinC8C monoicous)
CGAGAGGCATCTACGCTCCTCCTCGCCGTTGGTTCTCACTCTCTCGCTCC CTCTCCACGCACACTAGTACACGGGAGCAGTGCCTGATATCCTGCGCCAT CCACGCCTTCGGGCACACAAGGTAGCGCGTGATAGGCGTGTGCTTTTGTT ATCCTTCAACTTCTTGCCACCGGACAACACAGCAGCAGCAGCAAATGGCC CGCTCGGCCACACCAGACGCAGCTCGGCTGCTGCAGAGCGTGCGCCAGCG CAACGAGGCGGGCGTGGAGAAAGCGCTCGCAGCGGGCTGCTCAATCGACG GCTCCAGCGAGCAGGACTGGCGACCGCTCCTCGCCGCCGCCGCCTCCGGC AAGGTCAGGATGGCCGAGTTCCTGATAGCGAAGGGGGCCAACCTCGACCT GGGCTCTCTCGACGACCTGCGCTGCTCGGACGGGCTCGAGGTGCTCGGCA AGGGGGTGCGAGCCCTGCACGTCGCCATCAACCACTACCACCTGGACGTG TTCCGCGTGCTGCTCGAGGCCGGGGCCAACCCCGACTCTGCCAACGGAAA GGGACTCACCCCGCTGATGCTGACCTGCATACTCGAGGACCCGGGGCGGG GCGCGGAGCGCGCGATCATGGCCCGCGAGTTGCTCAAGGCCGGGGCGGAC CCGGCCCTGGCGGACTTCCAGGGCAAGACGGCTCTCGGCTTCGCAGCGGC GCGGAGCCAGATCGACCTGATCGACATCCTCCTGCTCCAGGCGCCCACAA CGCTGAACCGCGCCACGCCGGACGGCCTCACGCCGCTGTACGCCGCCGCC ATGAGCGGCAAGGACGAGGCCGTCGCCCACCTGCTCAAGGCGGGGGCCCA GCAGCCGCCGGCATCGGCGGAGAAGGACATGTGCCCGCTCGTCGCGGCCG TGCGCGAGAACCACCGGAAGGTGGTCAAGGTCCTCCTCTCCGACCAGGGG ATGCGGGCGATCGGGGGCTCCGAGGCTATCCCGCGGGCGGTGGGCGCGGC GGCGGCCGCGCGAAAGGGGAGGGCGGGCATCGTGCAGATGCTTCTCTTGG CCGAGGGGGAGGAGAGACAGCGGCACTGGGCAAGGTGTTGCTTCAAGGAG GACCCCGTGCTCCACTGCGCCGTGTCGTTCGGCAACATCTCGGCGGCGCG GGTGCTTTTGGCCGCCGGCGCGGACGAGACGGCCGAGAACAACGAGGGCC GGTGGGCGAGGGAGGTGATCGGTTTCAACGCGCCCAGCCTCCAGCGGGAC CCGGCGAAGAAGGGGGCTATTGTGAGGATGCTGGAGAGGGGCCCCGCGTT TCGCGCTCGTTCGTTTTTGTGGCCCCCAGGGACCGGTGCTGCTGGTACTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GGTGATGCGGATGATACGTGTGCGAATGATGCGTGTGGGAATGATGTCTG TGCCGTTGCTGGGGATGCTGGTGATGCCTGTGCTGCGGGCGATGCCGGGG GGGGGGAGATTTCTGCCGCTGGCGCTGCTGCTGCTGGAGGGGGCTGCGCT GATGGGGACGGGGATGCTTGCGCTTGCGGGGAAGGTGGGGATGATGATGG TGCGGCTGACGGTGCCGCTGTTGAGACTTGTGCTGGTGGGGACTGTTGTG GCGGTGATGAAGTGAACTCCTTGCCGGGCAGAACATCGAAGACTCCGCTA GGCGTGCGAATCTATCGGGCGAAGAGCGAGGCCTTTTTAGTTAGGGGTGC TAGCAGGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1647440..1649199+

>mRNA_C-linearis_contig9.16590.1 ID=mRNA_C-linearis_contig9.16590.1|Name=mRNA_C-linearis_contig9.16590.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3030bp|location=Sequence derived from alignment at C-linearis_contig9:1647440..1649199+ (Chordaria linearis ClinC8C monoicous)
ATGGCCCGCTCGGCCACACCAGACGCAGCTCGGCTGCTGCAGAGCGTGCG
CCAGCGCAACGAGGCGGGCGTGGAGAAAGCGCTCGCAGCGGGCTGCTCAA
TCGACGGCTCCAGCGAGCAGGACTGGCGACCGCTCCTCGCCGCCGCCGCC
TCCGGCAAGGTCAGGATGGCCGAGTTCCTGATAGCGAAGGGGGCCAACCT
CGACCTGGGCTCTCTCGACGACCTGCGCTGCTCGGACGGGCTCGAGGTGC
TCGGCAAGGGGGTGCGAGCCCTGCACGTCGCCATCAACCACTACCACCTG
GACGTGTTCCGCGTGCTGCTCGAGGCCGGGGCCAACCCCGACTCTGCCAA
CGGAAAGGGACTCACCCCGCTGATGCTGACCTGCATACTCGAGGACCCGG
GGCGGGGCGCGGAGCGCGCGATCATGGCCCGCGAGTTGCTCAAGGCCGGG
GCGGACCCGGCCCTGGCGGACTTCCAGGGCAAGACGGCTCTCGGCTTCGC
AGCGGCGCGGAGCCAGATCGACCTGATCGACATCCTCCTGCTCCAGGCGC
CCACAACGCTGAACCGCGCCACGCCGGACGGCCTCACGCCGCTGTACGCC
GCCGCCATGAGCGGCAAGGACGAGGCCGTCGCCCACCTGCTCAAGGCGGG
GGCCCAGCAGCCGCCGGCATCGGCGGAGAAGGACATGTGCCCGCTCGTCG
CGGCCGTGCGCGAGAACCACCGGAAGGTGGTCAAGGTCCTCCTCTCCGAC
CAGGGGATGCGGGCGATCGGGGGCTCCGAGGCTATCCCGCGGGCGGTGGG
CGCGGCGGCGGCCGCGCGAAAGGGGAGGGCGGGCATCGTGCAGATGCTTC
TCTTGGCCGAGGGGGAGGAGAGACAGCGGCACTGGGCAAGGTGTTGCTTC
AAGGAGGACCCCGTGCTCCACTGCGCCGTGTCGTTCGGCAACATCTCGGC
GGCGCGGGTGCTTTTGGCCGCCGGCGCGGACGAGACGGCCGAGAACAACG
AGGGCCGGTGGGCGAGGGAGGTGATCGGTTTCAACGCGCCCAGCCTCCAG
CGGGACCCGGCGAAGAAGGGGGCTATTGTGAGGATGCTGGAGAGGGGCCC
CGCGTTTCGCGCTCGTTCGTTTTTGTGGCCCCCAGGGACCGGTGCTGCTG
GTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGGTGATGCGGATGATACGTGTGCGAATGATGCGTGTGGGAATGA
TGTCTGTGCCGTTGCTGGGGATGCTGGTGATGCCTGTGCTGCGGGCGATG
CCGGGGGGGGGGAGATTTCTGCCGCTGGCGCTGCTGCTGCTGGAGGGGGC
TGCGCTGATGGGGACGGGGATGCTTGCGCTTGCGGGGAAGGTGGGGATGA
TGATGGTGCGGCTGACGATGGCCCGCTCGGCCACACCAGACGCAGCTCGG
CTGCTGCAGAGCGTGCGCCAGCGCAACGAGGCGGGCGTGGAGAAAGCGCT
CGCAGCGGGCTGCTCAATCGACGGCTCCAGCGAGCAGGACTGGCGACCGC
TCCTCGCCGCCGCCGCCTCCGGCAAGGTCAGGATGGCCGAGTTCCTGATA
GCGAAGGGGGCCAACCTCGACCTGGGCTCTCTCGACGACCTGCGCTGCTC
GGACGGGCTCGAGGTGCTCGGCAAGGGGGTGCGAGCCCTGCACGTCGCCA
TCAACCACTACCACCTGGACGTGTTCCGCGTGCTGCTCGAGGCCGGGGCC
AACCCCGACTCTGCCAACGGAAAGGGACTCACCCCGCTGATGCTGACCTG
CATACTCGAGGACCCGGGGCGGGGCGCGGAGCGCGCGATCATGGCCCGCG
AGTTGCTCAAGGCCGGGGCGGACCCGGCCCTGGCGGACTTCCAGGGCAAG
ACGGCTCTCGGCTTCGCAGCGGCGCGGAGCCAGATCGACCTGATCGACAT
CCTCCTGCTCCAGGCGCCCACAACGCTGAACCGCGCCACGCCGGACGGCC
TCACGCCGCTGTACGCCGCCGCCATGAGCGGCAAGGACGAGGCCGTCGCC
CACCTGCTCAAGGCGGGGGCCCAGCAGCCGCCGGCATCGGCGGAGAAGGA
CATGTGCCCGCTCGTCGCGGCCGTGCGCGAGAACCACCGGAAGGTGGTCA
AGGTCCTCCTCTCCGACCAGGGGATGCGGGCGATCGGGGGCTCCGAGGCT
ATCCCGCGGGCGGTGGGCGCGGCGGCGGCCGCGCGAAAGGGGAGGGCGGG
CATCGTGCAGATGCTTCTCTTGGCCGAGGGGGAGGAGAGACAGCGGCACT
GGGCAAGGTGTTGCTTCAAGGAGGACCCCGTGCTCCACTGCGCCGTGTCG
TTCGGCAACATCTCGGCGGCGCGGGTGCTTTTGGCCGCCGGCGCGGACGA
GACGGCCGAGAACAACGAGGGCCGGTGGGCGAGGGAGGTGATCGGTTTCA
ACGCGCCCAGCCTCCAGCGGGACCCGGCGAAGAAGGGGGCTATTGTGAGG
ATGCTGGAGAGGGGCCCCGCGTTTCGCGCTCGTTCGTTTTTGTGGCCCCC
AGGGACCGGTGCTGCTGGTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGGTGATGCGGATGATACGTGTGCGAAT
GATGCGTGTGGGAATGATGTCTGTGCCGTTGCTGGGGATGCTGGTGATGC
CTGTGCTGCGGGCGATGCCGGGGGGGGGGAGATTTCTGCCGCTGGCGCTG
CTGCTGCTGGAGGGGGCTGCGCTGATGGGGACGGGGATGCTTGCGCTTGC
GGGGAAGGTGGGGATGATGATGGTGCGGCTGACGTGAACTCCTTGCCGGG
CAGAACATCGAAGACTCCGCTAGGCGTGCGAATCTATCGGGCGAAGAGCG
AGGCCTTTTTAGTTAGGGGTGCTAGCAGGTGATGAACTCCTTGCCGGGCA
GAACATCGAAGACTCCGCTAGGCGTGCGAATCTATCGGGCGAAGAGCGAG
GCCTTTTTAGTTAGGGGTGCTAGCAGGTGA
back to top