mRNA_C-linearis_contig9.16582.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16582.1
Unique NamemRNA_C-linearis_contig9.16582.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.450e-13
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:   32 RAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            R+ LK     IF+LV +GAT EQWAEWLRVPLE AAA GN+DL N LL AGADG
Sbjct:    7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADG 60
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D8LQL7_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.620e-12
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:   11 SNTDYLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            SN +   RA L      IFELV R AT EQW EWLR PLE AAA+GN+DLF  L+ AGA+G
Sbjct:    4 SNREEEDRARLDGFEIEIFELVQREATAEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANG 64
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.020e-12
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:   23 YLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            Y KR  L+ + S I++LV  GAT +QW EWLRVPLE AAA GN++L N+LL AGADG
Sbjct:    4 YPKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADG 60
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-12
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:   56 SNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            ++IF+LV   AT EQW +WLRVPLE AAA GN+DLF  L+ AGADG
Sbjct:    2 ASIFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADG 47
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 9.250e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:   23 YLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            Y +R  L+ + S I++LV   AT +QW EWLR+PLE AAA GN++L ++LLGAGADG
Sbjct:    4 YPERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADG 60
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.260e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   23 YLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            Y +R   + + S I++LV   AT +QW EWLRVPLE AAA GN++L N+LL AGADG
Sbjct:    4 YPERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADG 60
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.440e-10
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2 
Query:   23 YLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            Y KRA L+     IF+L+  GAT EQWAEWLR PLE AAA GN+ L   LL AGA+G
Sbjct:    4 YPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANG 60
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.250e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 2 
Query:   32 RAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGAD 190
            R+ L      IF+LV RGAT EQW EWLR P E AAA+GN+D F  L+ AGA+
Sbjct:   11 RSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGAN 63
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.270e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   11 SNTDYLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGAD 190
            SN +   R+ L      IF+L+ R AT EQW EWLR PLE AAA+GN+DLF  L+ AGA+
Sbjct:    4 SNREEEDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGAN 63
[Close]
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.310e-10
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:   50 LASNIFELVDRGATDEQWAEWLRVPLEQAAADGNIDLFNALLGAGADG 193
            L   IF+LV   AT  QW EWLR PLE AAA+GNIDLF  L+ AGADG
Sbjct:   68 LEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADG 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K513_9PHAE2.450e-1368.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL7_ECTSI3.620e-1259.02Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LRS0_ECTSI4.020e-1261.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G6Z7_ECTSI5.100e-1265.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS36_ECTSI9.250e-1156.14Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI1.260e-1056.14Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K1F4_9PHAE4.440e-1059.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE8.250e-1056.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI8.270e-1053.33Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G692_ECTSI8.310e-1064.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1621087..1621279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog2880.D8LQL7
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size195
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.0476866-UTR-C-linearis_contig9:1621086..16210931622930737.0476866-UTR-C-linearis_contig9:1621086..1621093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1621087..1621093 +
1690881223.251698-UTR-C-linearis_contig9:1621086..16210931690881223.251698-UTR-C-linearis_contig9:1621086..1621093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1621087..1621093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.0636733-CDS-C-linearis_contig9:1621093..16212791622930737.0636733-CDS-C-linearis_contig9:1621093..1621279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1621094..1621279 +
1690881223.2700307-CDS-C-linearis_contig9:1621093..16212791690881223.2700307-CDS-C-linearis_contig9:1621093..1621279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1621094..1621279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16582.1prot_C-linearis_contig9.16582.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1621094..1621279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16582.1

>prot_C-linearis_contig9.16582.1 ID=prot_C-linearis_contig9.16582.1|Name=mRNA_C-linearis_contig9.16582.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=62bp
MSNTDYLKRAPLKVLASNIFELVDRGATDEQWAEWLRVPLEQAAADGNID
LFNALLGAGADG
back to top

mRNA from alignment at C-linearis_contig9:1621087..1621279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16582.1 ID=mRNA_C-linearis_contig9.16582.1|Name=mRNA_C-linearis_contig9.16582.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=193bp|location=Sequence derived from alignment at C-linearis_contig9:1621087..1621279+ (Chordaria linearis ClinC8C monoicous)
CCGCACTATGAGCAACACTGACTACCTCAAGCGTGCACCCCTAAAGGTTC
TTGCCAGCAACATCTTCGAGCTCGTCGATCGAGGTGCCACGGACGAGCAG
TGGGCGGAGTGGCTTCGGGTACCGCTGGAGCAGGCCGCCGCCGACGGCAA
CATCGACCTCTTCAACGCGCTGTTAGGAGCTGGGGCGGACGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1621087..1621279+

>mRNA_C-linearis_contig9.16582.1 ID=mRNA_C-linearis_contig9.16582.1|Name=mRNA_C-linearis_contig9.16582.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at C-linearis_contig9:1621087..1621279+ (Chordaria linearis ClinC8C monoicous)
ATGAGCAACACTGACTACCTCAAGCGTGCACCCCTAAAGGTTCTTGCCAG
CAACATCTTCGAGCTCGTCGATCGAGGTGCCACGGACGAGCAGTGGGCGG
AGTGGCTTCGGGTACCGCTGGAGCAGGCCGCCGCCGACGGCAACATCGAC
CTCTTCAACGCGCTGTTAGGAGCTGGGGCGGACGGGATGAGCAACACTGA
CTACCTCAAGCGTGCACCCCTAAAGGTTCTTGCCAGCAACATCTTCGAGC
TCGTCGATCGAGGTGCCACGGACGAGCAGTGGGCGGAGTGGCTTCGGGTA
CCGCTGGAGCAGGCCGCCGCCGACGGCAACATCGACCTCTTCAACGCGCT
GTTAGGAGCTGGGGCGGACGGG
back to top