mRNA_C-linearis_contig9.16577.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16577.1
Unique NamemRNA_C-linearis_contig9.16577.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1527451..1531041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1944
Cds size1005
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16577.1prot_C-linearis_contig9.16577.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1528390..1531041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.8433425-UTR-C-linearis_contig9:1527450..15283891622930701.8433425-UTR-C-linearis_contig9:1527450..1528389Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1527451..1528389 -
1690881204.935858-UTR-C-linearis_contig9:1527450..15283891690881204.935858-UTR-C-linearis_contig9:1527450..1528389Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1527451..1528389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.8655202-CDS-C-linearis_contig9:1528389..15287971622930701.8655202-CDS-C-linearis_contig9:1528389..1528797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1528390..1528797 -
1690881204.9482799-CDS-C-linearis_contig9:1528389..15287971690881204.9482799-CDS-C-linearis_contig9:1528389..1528797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1528390..1528797 -
1622930701.8847558-CDS-C-linearis_contig9:1529329..15297221622930701.8847558-CDS-C-linearis_contig9:1529329..1529722Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1529330..1529722 -
1690881204.9565945-CDS-C-linearis_contig9:1529329..15297221690881204.9565945-CDS-C-linearis_contig9:1529329..1529722Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1529330..1529722 -
1622930701.901552-CDS-C-linearis_contig9:1530118..15302161622930701.901552-CDS-C-linearis_contig9:1530118..1530216Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1530119..1530216 -
1690881204.9665368-CDS-C-linearis_contig9:1530118..15302161690881204.9665368-CDS-C-linearis_contig9:1530118..1530216Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1530119..1530216 -
1622930701.915482-CDS-C-linearis_contig9:1530935..15310411622930701.915482-CDS-C-linearis_contig9:1530935..1531041Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1530936..1531041 -
1690881204.975026-CDS-C-linearis_contig9:1530935..15310411690881204.975026-CDS-C-linearis_contig9:1530935..1531041Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1530936..1531041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16577.1

>prot_C-linearis_contig9.16577.1 ID=prot_C-linearis_contig9.16577.1|Name=mRNA_C-linearis_contig9.16577.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
RPPTHLPARKAAPHSPPRPHNSPTPALPTKKHCTFGFSLFSEQIQRWPGS
SLSRWEWSPSASQLVLLPGLLRTRVGCAARLQGGSSTATTSRPSSATPSA
APTASSPSTKPGRSSATAACARWSSAARRSAAPSPAPTASPPSRTPAPPG
AGATTARRSSAARRSARTTRAPTATSRSRTPGTCFATTTTAPRSSAATSS
TRVATTATGSSTATTSRPSSATPSAAPTASSPSTKPGRSSATAACARWSS
AARRSAAPSPAPTASPPSRTPAPPGAGATTARRSSAARRSARTTRAPTAT
SRSRTPGTCFATTTTAPRSSAATRSTTERLNCSN*
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mRNA from alignment at C-linearis_contig9:1527451..1531041-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16577.1 ID=mRNA_C-linearis_contig9.16577.1|Name=mRNA_C-linearis_contig9.16577.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3591bp|location=Sequence derived from alignment at C-linearis_contig9:1527451..1531041- (Chordaria linearis ClinC8C monoicous)
CGCCCGCCAACACACCTGCCCGCGAGAAAAGCAGCCCCCCACTCCCCCCC
CCGTCCTCACAACTCACCAACACCAGCTCTTCCAACCAAGAAACACTGCA
CATTCGGTAAGTATTTTCTTTGTGTGAGACGTCAACGTGGAGGCCTTGCG
TACTGTAAACTTCTGTTTGTATCGCAAAGAGGTTGCGACAGCAGTCGACT
GTGAGTACCGCGAACTTGCTTCCAGCGTCATGAGATTCACGCAAAAACAA
CAACGATCACGCGAGAGGCTGCTTGTATTTTCATTGATGGTGTGGAATTA
ATGGTAGAGCAACCACCAGCGTGACCTAGCAGCGATGGTGCATCGTATCG
CCACTCTGTCGAGACTAGACCTGCGGTAAAAAGTGAGGAAGGGGAAGAAC
AGAACGTGATGTCAGAGAGGTTGAAGTTGACGTGCAAAGCGTTGAGGCTA
CATTCTCGTGTCTGGCGAGCAGAGCCAAAACCACATGTTGTTTGCAGCGG
GTTGCCTGACGACCCAGCGAGATGGCTTTGACCTGAGGTATATCGTAGCG
AGATAGCTTTGACCTGAGGTATATCGTCTTCCAACTTTCAACGTTTCGAG
ACCTCGACGAGACCTCGAGCGCGGGGATTTCTATTTCTCCGCCAGATCGC
TCATCGCCTCATTTCGTTCTAAAATAGAGCCGATAGAGGGCCGGGACCTT
GACAGTCCCGTGGCTCAGGAAGCTTCCCTGATATTTCTTGTGATGCTCGG
CTGTCGTTTGTTGCGAAAATGGACGTCAGTGATGAAACAGCCTCTCTTTT
GTCCCGCTTTGCCCCCCCCCCGCAGGTTTCTCGTTATTTTCAGAGCAGAT
ACAACGATGGCCCGGTTCCTCGCTATCACGATGGGAGTGGTCGCCCTCGG
CGTCGCAGCTAGTGCTTCTCCCGGTGAGTTGTATGGTAGAGTGCGTCTGC
GCTCATGTTGCTCCGCCTGAAAGCTCTCTGGTTGATCTGGTTTACATCAT
CTCCCTTGGCACACTTCGCGGTACATGGTACGCATGGTTGACATGCTCAA
AATCAAGATAACTCGCGTACACTACTGTGGTATACGGTACATATTGTTGA
ATCTAGAGTACCCTTTGGCTGCCCCTTTCCCGGTGCACCGCCGGTCCTGC
TCATTGGTGTCTAGCCTACATAGACTACACGTTAATCCCTCCAAGAAACA
CATTTTCCTTTCAAAAAGAGATTGCGCCTACCGTGCATTGCCTCGTTTTG
CCAGTCCTCTTGGTGTGACGCTGAATTTGTCCAACCGATTGTCAATATAT
CCCTATGTACCCTCTACAGGGGCTGCTGAGAACGAGAGTGGGCTGCGCGG
CGCGCCTGCAGGGCGGAAGCTCGACGGCTACCACGTCGAGACCAAGTTCT
GCAACTCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCGACAAAGCCTGG
GAGGTCGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAGTGCTGCCAGGC
GTTCTGCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCCCATCTCGTACG
CCAGCACCACCAGGTGCTGGGGCGACGACTGCACGCAGGAGCAGTGCTGC
GAGGCGTTCTGCTCGTACCACCCGTGCCCCAACGGCTACGTCCCGATCGA
GAACGCCGGGCACGTGCTTTGCGACGACGACCACTGCACCACGAAGCAGT
GCTGCGACCTCGGTGAGTGGAGTGAGGATGTACGTCACACTGAAGTAGGA
AATATTTTGCTTGATGGCGTCGTTCTTATGTTCGAACCGAGCACAACACT
GGAGACATTTTGTTTTTCAGATGGGTGAGAGAAGTGTGGTGTTGGTGCCA
CCCTGGTGGGCTCAACGCTGTTACTCCGCAGAAATACTGTAGGTTACAAC
ATACCACCGAGGTTTCCTCAACCACATTGTGTCGTTTGCTGCAGAGCTTC
GTTGCGGTGGCGCTCTGTTGTCGTGCCCCTCGAAGCCCTTTCCGCCTTTG
CTCCCGCTTAAGTCTCGCCCCACGTCCTTCTAGACGTACTGCCACCTGCT
CCCCCAGAGATGTCGAGTGGCAACAGCGCCCGAGAGGCAGGCGAGCATAC
ATTGCCTCCACTTGAATCGAATCGTATTGTACACGCTTAAACCCACCAAC
ATTTCCTGCCCACCTCGAAGCCCACCGACAACATTGCCCGTGACAACTGT
CCTCTGCCCACCCTCCTCGCCTTTTCCCGCCTCCCCTGCTGCAGTCGACC
AGGGTGGCCACTACCGCAACAGGAAGCTCGACGGCTACCACGTCGAGACC
AAGTTCTGCAACTCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCGACAA
AGCCTGGGAGGTCGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAGTGCT
GCCAGGCGTTCTGCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCCCATC
TCGTACGCCAGCACCACCAGGTGCTGGGGCGACGACTGCACGCAGGAGCA
GTGCTGCGAGGCGTTCTGCTCGTACCACCCGTGCCCCAACGGCTACGTCC
CGATCGAGAACGCCGGGCACGTGCTTTGCGACGACGACCACTGCACCACG
AAGCAGTGCTGCGACCAGGTCCACTACTGAACGGCTGAACTGCAGCAACT
AAAGCTGCACTTCCTGATTGTTCCGCTTGGCTTCGAGAGCCAGTATTCCC
AGCCGTGCACCGGGGCGTCGTGGCGGGGTTACGGGATCTTGCGCACAGAA
ATGCCTTATGTTCAGATTCGCTCAACGACGTATTGATGCTTTGTTCTGTG
ATGTCTTGAAGTTTTTTGCATTTCGAGTTTTTGTTGGTGTACAAAGCAGG
AGTGGTGTCTAGACAGCTCTGTGAGGAAGGTGTGGTCTTTCGGACGTAGT
GCTTGATTGGAAAAAAGTAGAGATGGCTGTTTGGTGGAATCTGGGACGGT
TTCGGGTGTGTTCGGTTCGTCTTTGACGAGTGGGTCAGTCAGATCAACGT
TCGAAGTGGCCCAGTTTGTAGAATGAAGTGATAGATATTCTGTCTTGTTT
TTCAACTGCCTTGTCGTTGTGTACGTAGTGCACCTTAAATGTCATGTCAG
CTGGTCAGCTGGTGCGAAGTGGTCGGGCCAGGAGAGGTTGATTGTGTCAG
ACAGAGTTTCGTATTTTGTAGATAGCGGTGTGCTTTCCCTTGGGTCACCA
AGACGTCCGTGCTTTCTGTGGGTCCCTGCTCATCGTGTCCCAGGCCCGAT
ATGTATCGCAGGAAAGATTGGTTGGATGCGTTGCAGATGGCGTTGACAAC
GGTGCTTGGTTCATCTTTGGCCATGAGCTGCGAGGTGGTAGGGCGGAACC
CAAATCCTCGTTGCGTATTCCGTACGAAGATAAAAATTAGAAGATGAGCT
GTAGGTATGTATGAAAAAAACACCAAGTATCGAGCTACGTGTAGCCGGTA
CTATACTATGTTCCGTGCGGCTGGTGCAAACAGGTTGGATGCGTGTGCCC
AACGGCCATGTATTCCATAGCGTGGGAAGCAAATTTCGGTAGAACATCGC
CGAAAATGCGTGTAGTCCATAATTGATTGCCCCCGCCACGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:1527451..1531041-

>mRNA_C-linearis_contig9.16577.1 ID=mRNA_C-linearis_contig9.16577.1|Name=mRNA_C-linearis_contig9.16577.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at C-linearis_contig9:1527451..1531041- (Chordaria linearis ClinC8C monoicous)
CGCCCGCCAACACACCTGCCCGCGAGAAAAGCAGCCCCCCACTCCCCCCC
CCGTCCTCACAACTCACCAACACCAGCTCTTCCAACCAAGAAACACTGCA
CATTCGCGCCCGCCAACACACCTGCCCGCGAGAAAAGCAGCCCCCCACTC
CCCCCCCCGTCCTCACAACTCACCAACACCAGCTCTTCCAACCAAGAAAC
ACTGCACATTCGGTTTCTCGTTATTTTCAGAGCAGATACAACGATGGCCC
GGTTCCTCGCTATCACGATGGGAGTGGTCGCCCTCGGCGTCGCAGCTAGT
GCTTCTCCCGGTTTCTCGTTATTTTCAGAGCAGATACAACGATGGCCCGG
TTCCTCGCTATCACGATGGGAGTGGTCGCCCTCGGCGTCGCAGCTAGTGC
TTCTCCCGGGGCTGCTGAGAACGAGAGTGGGCTGCGCGGCGCGCCTGCAG
GGCGGAAGCTCGACGGCTACCACGTCGAGACCAAGTTCTGCAACTCCATC
GGCTGCCCCAACGGCTTCCAGCCCGTCGACAAAGCCTGGGAGGTCGAGTG
CTACGGCGGCGTGTGCAAGGTGGAGCAGTGCTGCCAGGCGTTCTGCAGCT
CCTTCCCCTGCCCCAACGGCTTCACCCCCATCTCGTACGCCAGCACCACC
AGGTGCTGGGGCGACGACTGCACGCAGGAGCAGTGCTGCGAGGCGTTCTG
CTCGTACCACCCGTGCCCCAACGGCTACGTCCCGATCGAGAACGCCGGGC
ACGTGCTTTGCGACGACGACCACTGCACCACGAAGCAGTGCTGCGACCTC
GGGGCTGCTGAGAACGAGAGTGGGCTGCGCGGCGCGCCTGCAGGGCGGAA
GCTCGACGGCTACCACGTCGAGACCAAGTTCTGCAACTCCATCGGCTGCC
CCAACGGCTTCCAGCCCGTCGACAAAGCCTGGGAGGTCGAGTGCTACGGC
GGCGTGTGCAAGGTGGAGCAGTGCTGCCAGGCGTTCTGCAGCTCCTTCCC
CTGCCCCAACGGCTTCACCCCCATCTCGTACGCCAGCACCACCAGGTGCT
GGGGCGACGACTGCACGCAGGAGCAGTGCTGCGAGGCGTTCTGCTCGTAC
CACCCGTGCCCCAACGGCTACGTCCCGATCGAGAACGCCGGGCACGTGCT
TTGCGACGACGACCACTGCACCACGAAGCAGTGCTGCGACCTCGTCGACC
AGGGTGGCCACTACCGCAACAGGAAGCTCGACGGCTACCACGTCGAGACC
AAGTTCTGCAACTCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCGACAA
AGCCTGGGAGGTCGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAGTGCT
GCCAGGCGTTCTGCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCCCATC
TCGTACGCCAGCACCACCAGGTGCTGGGGCGACGACTGCACGCAGGAGCA
GTGCTGCGAGGCGTTCTGCTCGTACCACCCGTGCCCCAACGGCTACGTCC
CGATCGAGAACGCCGGGCACGTGCTTTGCGACGACGACCACTGCACCACG
AAGCAGTGCTGCGACCAGGTCCACTACTGAACGGCTGAACTGCAGCAACT
AATCGACCAGGGTGGCCACTACCGCAACAGGAAGCTCGACGGCTACCACG
TCGAGACCAAGTTCTGCAACTCCATCGGCTGCCCCAACGGCTTCCAGCCC
GTCGACAAAGCCTGGGAGGTCGAGTGCTACGGCGGCGTGTGCAAGGTGGA
GCAGTGCTGCCAGGCGTTCTGCAGCTCCTTCCCCTGCCCCAACGGCTTCA
CCCCCATCTCGTACGCCAGCACCACCAGGTGCTGGGGCGACGACTGCACG
CAGGAGCAGTGCTGCGAGGCGTTCTGCTCGTACCACCCGTGCCCCAACGG
CTACGTCCCGATCGAGAACGCCGGGCACGTGCTTTGCGACGACGACCACT
GCACCACGAAGCAGTGCTGCGACCAGGTCCACTACTGAACGGCTGAACTG
CAGCAACTAA
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