mRNA_C-linearis_contig9.16576.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16576.1
Unique NamemRNA_C-linearis_contig9.16576.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1523822..1524689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size661
Cds size660
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.730719-CDS-C-linearis_contig9:1523821..15242071622930701.730719-CDS-C-linearis_contig9:1523821..1524207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1523822..1524207 -
1690881204.9111025-CDS-C-linearis_contig9:1523821..15242071690881204.9111025-CDS-C-linearis_contig9:1523821..1524207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1523822..1524207 -
1622930701.768473-CDS-C-linearis_contig9:1524415..15246891622930701.768473-CDS-C-linearis_contig9:1524415..1524689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1524416..1524689 -
1690881204.927083-CDS-C-linearis_contig9:1524415..15246891690881204.927083-CDS-C-linearis_contig9:1524415..1524689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1524416..1524689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16576.1prot_C-linearis_contig9.16576.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1523822..1524689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16576.1

>prot_C-linearis_contig9.16576.1 ID=prot_C-linearis_contig9.16576.1|Name=mRNA_C-linearis_contig9.16576.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp
ENAWEIECHDGVCEPGQCCQAFCSSFPCPSGMIPITYFAPFPCDDNVCTT
EQCCEALCGPQPCPNGYIPIEDAWSVRCDNQECTTEQCCVLFDQGGHYRN
RKLDDYHVETKFCNSIGCPNGFQPVDKAWEVECYGGVCKVEQCCQAFCSS
FPCPNGFTPISYASTTRCWGDDCTQEQCCEAFCSYHPCPNGYVPIENAGH
VLCNDDHCTTEQCCDQVHY*
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mRNA from alignment at C-linearis_contig9:1523822..1524689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16576.1 ID=mRNA_C-linearis_contig9.16576.1|Name=mRNA_C-linearis_contig9.16576.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=868bp|location=Sequence derived from alignment at C-linearis_contig9:1523822..1524689- (Chordaria linearis ClinC8C monoicous)
GAGAACGCCTGGGAAATCGAGTGCCACGACGGCGTGTGCGAGCCCGGCCA
GTGCTGCCAGGCGTTCTGCAGCTCCTTCCCGTGCCCGAGCGGCATGATCC
CAATCACATACTTCGCCCCTTTTCCCTGTGATGACAACGTATGCACCACC
GAGCAGTGCTGCGAGGCGTTGTGCGGGCCCCAACCGTGCCCCAATGGCTA
CATCCCCATCGAGGACGCCTGGAGCGTTCGGTGCGACAACCAAGAGTGCA
CCACGGAGCAGTGCTGCGTCCTGTGTGAGTGACGAGAGGTGTGGTGACTA
CAATAGCATCAGAGAAAGAGGGATGACAGGTGATCTCGATCTCGCTTTGC
TTCTCTTGTACTGTACTTTGGTCAAACGCTCCAACCTCCCAGCACGATTT
CCAGTCCATCTCCACACGCAGCCTACCTGCATACATATATAGTATGCTCA
TCCTCACCAGTTTCTTACCTCCCCTGCTGCAGTCGACCAGGGTGGCCACT
ACCGCAACAGGAAGCTCGACGACTACCACGTCGAGACCAAGTTCTGCAAC
TCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCGACAAAGCCTGGGAGGT
CGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAGTGCTGCCAGGCGTTCT
GCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCCCATCTCGTACGCCAGC
ACCACCAGGTGCTGGGGCGACGACTGCACGCAGGAGCAGTGCTGCGAGGC
GTTCTGCTCGTACCACCCGTGCCCCAACGGCTACGTCCCGATCGAGAACG
CCGGGCACGTGCTTTGCAACGACGACCACTGCACCACAGAGCAGTGCTGC
GACCAGGTCCACTACTGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:1523822..1524689-

>mRNA_C-linearis_contig9.16576.1 ID=mRNA_C-linearis_contig9.16576.1|Name=mRNA_C-linearis_contig9.16576.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig9:1523822..1524689- (Chordaria linearis ClinC8C monoicous)
GAGAACGCCTGGGAAATCGAGTGCCACGACGGCGTGTGCGAGCCCGGCCA
GTGCTGCCAGGCGTTCTGCAGCTCCTTCCCGTGCCCGAGCGGCATGATCC
CAATCACATACTTCGCCCCTTTTCCCTGTGATGACAACGTATGCACCACC
GAGCAGTGCTGCGAGGCGTTGTGCGGGCCCCAACCGTGCCCCAATGGCTA
CATCCCCATCGAGGACGCCTGGAGCGTTCGGTGCGACAACCAAGAGTGCA
CCACGGAGCAGTGCTGCGTCCTGTGAGAACGCCTGGGAAATCGAGTGCCA
CGACGGCGTGTGCGAGCCCGGCCAGTGCTGCCAGGCGTTCTGCAGCTCCT
TCCCGTGCCCGAGCGGCATGATCCCAATCACATACTTCGCCCCTTTTCCC
TGTGATGACAACGTATGCACCACCGAGCAGTGCTGCGAGGCGTTGTGCGG
GCCCCAACCGTGCCCCAATGGCTACATCCCCATCGAGGACGCCTGGAGCG
TTCGGTGCGACAACCAAGAGTGCACCACGGAGCAGTGCTGCGTCCTGTTC
GACCAGGGTGGCCACTACCGCAACAGGAAGCTCGACGACTACCACGTCGA
GACCAAGTTCTGCAACTCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCG
ACAAAGCCTGGGAGGTCGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAG
TGCTGCCAGGCGTTCTGCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCC
CATCTCGTACGCCAGCACCACCAGGTGCTGGGGCGACGACTGCACGCAGG
AGCAGTGCTGCGAGGCGTTCTGCTCGTACCACCCGTGCCCCAACGGCTAC
GTCCCGATCGAGAACGCCGGGCACGTGCTTTGCAACGACGACCACTGCAC
CACAGAGCAGTGCTGCGACCAGGTCCACTACTGATCGACCAGGGTGGCCA
CTACCGCAACAGGAAGCTCGACGACTACCACGTCGAGACCAAGTTCTGCA
ACTCCATCGGCTGCCCCAACGGCTTCCAGCCCGTCGACAAAGCCTGGGAG
GTCGAGTGCTACGGCGGCGTGTGCAAGGTGGAGCAGTGCTGCCAGGCGTT
CTGCAGCTCCTTCCCCTGCCCCAACGGCTTCACCCCCATCTCGTACGCCA
GCACCACCAGGTGCTGGGGCGACGACTGCACGCAGGAGCAGTGCTGCGAG
GCGTTCTGCTCGTACCACCCGTGCCCCAACGGCTACGTCCCGATCGAGAA
CGCCGGGCACGTGCTTTGCAACGACGACCACTGCACCACAGAGCAGTGCT
GCGACCAGGTCCACTACTGA
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