mRNA_C-linearis_contig9.16572.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: D7FR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR26_ECTSI) HSP 1 Score: 354 bits (908), Expect = 1.000e-111 Identity = 260/540 (48.15%), Postives = 287/540 (53.15%), Query Frame = 1
Query: 538 NEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEIHGRLGTNLSEGKRGGLDAGP--MSSFGQGWDDIKQRVAAEWGXXXXXXXXXXXXXXXXXI-------FPYFFGPHWPQDVSPESALLALALLWGGAAARRASLQRRQYNGFEAKLAGIEAQRATLPPSA-GGGWSIGKDALASPGACPICLDTFSAAAAVDDCHAGVGERSGGPIGSDGLPTAT-SGCGHTFCQSCLSRWHGESDPPPTHDGTAPSYPCPICDSPTPALGDPRLGRPHRRRRRRLAPXXXXXXXPARQRRPRRGTFGFTWPGFSSRGARATMSQGVGVGESDMRFSSPGPPSGWGSAATAAAQGMLAKPIAPXXXXXXXXXXXXXXXXXXXXXQRTIMPPVPGKASDMATRRGLGATGGQQARERARREAAFQLASLGSQYPKFLDDRTVNRRVVWLSKDYSSSWSRDQMLHTSRPPEIGGGAGDHGTGGAKKGSGWVSTRSSSGFG 2124
+E V+AE FARGVQDSWRVGK+GCDNGF+LVASREDRSFAISVGKGLE YL P+DRNAALN+MKPLLREGDWD AV+LAL EIHGRL NL++ G +SS G GW+D+K+ + WG XXXXXXXXXXXXXXX F FF W DV P S LLAL+LLWGGA AR ASLQRR+Y+ FEAKLAGIEAQRA LP SA GGGW +G+DALAS G CPICLD FS AA G G + G +G+DG+P AT CGHTFCQ R G S P G R GR LG TGG+QARERARREAAFQLASLGSQYPKFLDDRTVNR WLSKDYSSSWSRD ML +RP + G G G GGA+KGSGWV T S G G
Sbjct: 31 DEEVTAEGFARGVQDSWRVGKRGCDNGFVLVASREDRSFAISVGKGLERYLPPRDRNAALNAMKPLLREGDWDGAVVLALEEIHGRLVGNLAKAAGGXXXXXXXXLSSLGWGWEDLKRWASDGWGGSXXXXXXXXXXXXXXXFRGFHLGGFENFFRESWNVDVPPGSVLLALSLLWGGATAR-ASLQRRRYDRFEAKLAGIEAQRAMLPLSAAGGGWLVGQDALASRGVCPICLDAFSEAAD------GSGADTKGLVGADGMPAATLPDCGHTFCQ----RPSGASANP----------------------GVSRTGR-------------------------------------------------------------------------------------------------------------------------------LGETGGEQARERARREAAFQLASLGSQYPKFLDDRTVNR---WLSKDYSSSWSRDPMLALNRPQDTGSDNGRVGGGGARKGSGWV-TNGSRGLG 406
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A6H5JG24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG24_9PHAE) HSP 1 Score: 302 bits (773), Expect = 7.570e-93 Identity = 186/281 (66.19%), Postives = 208/281 (74.02%), Query Frame = 1
Query: 541 EAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEIHGRLGTNLSEGKRGGLD-AGPMSSFGQGWDDIKQRVAAEWGXXXXXXXXXXXXXXXXXIFPYF-----------FGPHWPQDVSPESALLALALLWGGAAARRASLQRRQYNGFEAKLAGIEAQRATLPPSAGGGWSIGKDALASPGACPICLDTFSAAAAVDDCHAGVGERSGGPIGSDGLPTAT-SGCGHTFCQSCL 1344
E V+AE FARGVQD WRVGK+GCDNGF+LVASREDRSFAISVGKGLE YL P+DRNAALN+MKPLLREGDWD AVLL L EIH RL NL++ GG AG +SS G GW+D+K+R + W XXXXXXXXXXXXXXXXX F FG +W DV P S LLAL+LLWGGA AR ASLQRR+Y+ FEAKLAGIEAQRA LP SAGGGWS+G+DALAS G CPICLD FS AA G G + G +G+D +P AT CGHTFCQ L
Sbjct: 31 EEVTAEGFARGVQDGWRVGKRGCDNGFVLVASREDRSFAISVGKGLERYLPPRDRNAALNAMKPLLREGDWDGAVLLGLEEIHRRLFENLAKAAGGGDGGAGALSSLGWGWEDLKRRASGGWXXXXXXXXXXXXXXXXXXXXXXFRGFHLGGFENSFGENWKLDVPPGSVLLALSLLWGGATAR-ASLQRRRYDRFEAKLAGIEAQRAMLPLSAGGGWSVGQDALASRGVCPICLDAFSEAAD------GSGADTKGLVGADRMPAATLPDCGHTFCQRRL 304
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A835YUD5_9STRA (TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD5_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.420e-27 Identity = 146/411 (35.52%), Postives = 189/411 (45.99%), Query Frame = 1
Query: 235 RGWSVDYLPSPTLDPSGCGHPAEKLHNGSFLCDPDGLLTSLGAQRVETRLEDILTL-QSPCGGEDDSKQHVEGGVAVVSRM-LPSSXXXXXXXXXXXXXXXXXNEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEIHGRLGTNLSEG-KRGGLDAGP--MSSFGQGWDDIKQRVAAEWGXXXXXXXXXXXXXXXXXIFPYFFGPHWPQDVSPESALLALA-----LLWGGAAARRA--SLQRRQYNGFEAKLAGIEAQRATLPPSAGGGWSIGKDALASPGACPICLDTFSAAAAVDDCHAGVGERSGGPIGSDGLPTATSGCGHTFCQSCLS---RWHGESDPPPTHDGTAPSYPCPICD 1422
R W+ D P P C A+ +N + LCDPD L+ A R+E LE + T QS CG E S Q ++ VA+ + +P+ A +AE FA+ +QD+W VG C NG LL+ S RSFA+S+G GLE L R+A L++M P LR GD AAVL AL + G L L+E K+ GP + + + A GXXXXXXXXXXXXXXXXX H + AL L L G +A S +R Q F K +E +A SAG + G + + +CP+CL+ F A G G P+G GLP CGH +C+SCL R G S PS PCPICD
Sbjct: 32 RAWATDDYPDLQRTPVLC-RAADAPNNAALLCDPDATLSPPNADRIEAELERLATAYQSACGPEG-SYQPLQLAVAIADAIHIPAGAD---------------THATTAE-FAKRLQDAWGVGHADCHNGALLLVSLRTRSFALSIGTGLEVTLPKAKRDAVLDAMVPWLRRGDTAAAVLAALRLLDGLL---LAESQKQQHRKRGPPMLRAVPSADGHLNVNEAGGGGXXXXXXXXXXXXXXXXXXXXXXXXXHRSGTTAASDALRFLRRHSQFALPAGLSALFLFDSWRRAQAADFRRK---VEELQALQQRSAGA--ADGAPSAEARSSCPVCLEPFKATVTDGGGSGGAGGEEL-PLGKAGLPLVELQCGHRYCRSCLGGMLRSAGAST-------CGPSSPCPICD 408
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A8J9WPH7_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WPH7_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 5.540e-15 Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 1
Query: 241 WSVDYLPSPTLDPSGCGHPAEKLHNGSFLCDPDGLLTSLGAQRVETRLEDILTLQSP------CGGEDDSKQHVEGGVAVVSRMLPSSXXXXXXXXXXXXXXXXXNEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAV 765
WS P+P DP+ CG + S++CDPDGL+T A +E L+DI + P CGG + + VA+ + S + +AE+FAR + D+W VG C++G +L S+E R AI G G + L K + M+PLL++G + AV
Sbjct: 31 WSPSTFPNPQTDPARCGR---RQVARSWICDPDGLITKKSADVIEGVLKDIASANEPFAPAKNCGGGYRLNEGYQVAVALAKKTDLSGGT---------------STGEAAERFARKLMDAWGVGDAQCNDGVVLFLSKEPRQVAIFAGAGSKGALDGKRIQEVIGRMRPLLQQGKYGEAV 193
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: L1I404_GUITC (TPM_phosphatase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I404_GUITC) HSP 1 Score: 85.9 bits (211), Expect = 5.740e-14 Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 1
Query: 232 VRGWSVDYLPSPTLDP--SGCGHPAEKLHNGSFLCDPDGLLTSLGAQRVETRLEDILTLQSPCGGEDDSKQHVEG---GVAVVSRMLPSSXXXXXXXXXXXXXXXXXNEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEIHGRL 798
V+GW LP+P+ S CG K + S +CDPDGL++ A +++ E I + G +DD V VA+V++M P+ + A ++AR V D+W +G G NG LL S+EDR IS G+ L N ++ M+P+LR+G +D A+L + EI R+
Sbjct: 65 VKGWPSSALPNPSTKEGASACGRSTVK--HSSSVCDPDGLISRKSADQMD---EMIDAARKQVGLKDDETSLVHDLQIAVAIVNKMGPADK----------------DRRELATRYARQVHDNWGLGSAGIGNGVLLFVSKEDRQVYISTGRLARNKLPDSVCNQIVDVMRPVLRQGYFDQALLKGVQEIITRI 237
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A7S0F4B4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F4B4_9CRYP) HSP 1 Score: 84.3 bits (207), Expect = 2.010e-13 Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1
Query: 235 RGWSVDYLPSPTLDP--SGCGHPAEKLHNGSFLCDPDGLLTSLGAQRVETRLEDILTLQSPCGGEDDSKQH-VEGGVAVVSRMLPSSXXXXXXXXXXXXXXXXXNEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEI 786
+GW LP+P+ + CG + + S +CDPDGL++ A +++ + D Q + S+ H ++ VA+V+RM + A ++AR V DSW +G G NG LL S+EDR IS G+ L N ++ M+P+LR+G +D A+L L EI
Sbjct: 76 KGWPSHALPNPSTKEGANACGR--SSVQHSSSVCDPDGLISRKSADQIDEMI-DAARKQISFTDDQSSQVHDLQIAVAIVNRMGDEDK----------------DRRALASRYARQVHDSWGLGDAGVGNGVLLFVSKEDRQVYISTGRLARSRLPDSVCNQIVDIMRPVLRKGYFDQALLKGLQEI 243
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A0G4GAY4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GAY4_VITBC) HSP 1 Score: 81.3 bits (199), Expect = 5.360e-13 Identity = 48/184 (26.09%), Postives = 80/184 (43.48%), Query Frame = 1
Query: 235 RGWSVDYLPSPTLDPSGCGHPAEKLHNGSFLCDPDGLLTSLGAQRVETRLEDILTLQSPCGGEDDSKQHVEGGVAVVSRMLPSSXXXXXXXXXXXXXXXXXNEAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAALNSMKPLLREGDWDAAVLLALGEI 786
+ W + P P P CG ++CDPDG+L+ A++V L I + S G K+ E GVA++ +M E+FA + + W +G C+NG L++ S++D + G G + L + + M+P LR+GD+DAA + + +I
Sbjct: 16 KAWRYEEYPDPITQPFACGQ-----KTSGWICDPDGILSRKAAEQVSDTLRRITSETSVLCGP--GKRPFEMGVALMQQMSRKQIHTLGGY------------GTGTERFAEKLGNHWAIGNGRCNNGILMLISKDDSVVYVKTGTGAQETLKNQHLADVIQRMRPALRKGDYDAATVQGVEDI 180
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: Q3B5U9_CHLL3 (TPM_phosphatase domain-containing protein n=2 Tax=Pelodictyon luteolum TaxID=1100 RepID=Q3B5U9_CHLL3) HSP 1 Score: 72.4 bits (176), Expect = 2.430e-10 Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 541 EAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAAL-NSMKPLLREGDWDAA----VLLALGEIHGRLGTNLSEGKRGGLDAGPM 849
E + E F+ V ++W++G+KG DNG LL+ASR+DR I VG GLE LT + N M PL R G D V+ + +HG E K+GG + PM
Sbjct: 89 EGDAIEDFSMRVAEAWKIGRKGKDNGALLIASRDDRKLRIEVGYGLEGSLTDLTAGRIVQNEMVPLFRAGRVDEGFQQGVISIIAAVHGEYRAEPGEKKKGGRVSLPM 196
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A165LXE7_PELLU (TPM_phosphatase domain-containing protein n=1 Tax=Pelodictyon luteolum TaxID=1100 RepID=A0A165LXE7_PELLU) HSP 1 Score: 69.7 bits (169), Expect = 2.080e-9 Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 541 EAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAAL-NSMKPLLREGDWDAAVLLALGEI----HGRLGTNLSEGKRGGLDAGPM 849
E + E F+ V ++W++G+KG DNG LL+ASR+DR I VG GLE LT + N M PL R G D L + I HG K+GG + PM
Sbjct: 89 EGDAIEDFSMRVAEAWKIGRKGKDNGALLIASRDDRKIRIEVGYGLEGSLTDLTAGRIVQNEMVPLFRAGRIDEGFLQGVSSIIAAVHGEYRAEPGAPKKGGRVSLPM 196
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Match: A0A4R0QJI2_9CHLB (TPM domain-containing protein n=1 Tax=Chlorobium sp. N1 TaxID=2491138 RepID=A0A4R0QJI2_9CHLB) HSP 1 Score: 65.9 bits (159), Expect = 3.190e-8 Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 541 EAVSAEQFARGVQDSWRVGKKGCDNGFLLVASREDRSFAISVGKGLEPYLTPKDRNAAL-NSMKPLLREGDWDAA----VLLALGEIHGRLGTNLSEGKRGGLDAGPM 849
E S E+F+ V + W++G+KG DNG LL+ASR+DR I VG GLE LT + N M PL R G D V + +HG + +GG + P+
Sbjct: 74 EGDSIEEFSIRVAERWKIGRKGKDNGVLLIASRDDRKLRIEVGYGLEGSLTDLVAGRIVQNEMVPLFRAGRIDEGFRRGVASIIAAVHGEYRADSRGNGKGGRVSLPL 181 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16572.1 >prot_C-linearis_contig9.16572.1 ID=prot_C-linearis_contig9.16572.1|Name=mRNA_C-linearis_contig9.16572.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=731bp MHPATQPLNCAAIFVCCVFCNTLPWGERDTSRAMSAGFSARQRRLPIVRGback to top mRNA from alignment at C-linearis_contig9:1479674..1485871- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16572.1 ID=mRNA_C-linearis_contig9.16572.1|Name=mRNA_C-linearis_contig9.16572.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6198bp|location=Sequence derived from alignment at C-linearis_contig9:1479674..1485871- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1479674..1485871- >mRNA_C-linearis_contig9.16572.1 ID=mRNA_C-linearis_contig9.16572.1|Name=mRNA_C-linearis_contig9.16572.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4386bp|location=Sequence derived from alignment at C-linearis_contig9:1479674..1485871- (Chordaria linearis ClinC8C monoicous)back to top |