mRNA_C-linearis_contig9.16566.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16566.1
Unique NamemRNA_C-linearis_contig9.16566.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1436119..1436960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size843
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.0560775-UTR-C-linearis_contig9:1436118..14364351622930706.0560775-UTR-C-linearis_contig9:1436118..1436435Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1436119..1436435 +
1690881206.8580966-UTR-C-linearis_contig9:1436118..14364351690881206.8580966-UTR-C-linearis_contig9:1436118..1436435Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1436119..1436435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.0707695-CDS-C-linearis_contig9:1436435..14369601622930706.0707695-CDS-C-linearis_contig9:1436435..1436960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1436436..1436960 +
1690881206.8722334-CDS-C-linearis_contig9:1436435..14369601690881206.8722334-CDS-C-linearis_contig9:1436435..1436960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1436436..1436960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16566.1prot_C-linearis_contig9.16566.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1436436..1436960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16566.1

>prot_C-linearis_contig9.16566.1 ID=prot_C-linearis_contig9.16566.1|Name=mRNA_C-linearis_contig9.16566.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
MCIVPGPTRGNTQTNPPISSPAPSRTPHTSIHHSLSAVSSPTRQRERGIR
QKNLTDKKQKRPSRDTGRDKGEDPPAPPRPTVFSRETRFRRDITSNTNAD
EGRAGFSDGNQCLGEPNHARPTDEEISHNFHNVPVRTNTQNIITRHGRAF
RGRTRQSKKAWSSTHTCARHRGTWG
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mRNA from alignment at C-linearis_contig9:1436119..1436960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16566.1 ID=mRNA_C-linearis_contig9.16566.1|Name=mRNA_C-linearis_contig9.16566.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at C-linearis_contig9:1436119..1436960+ (Chordaria linearis ClinC8C monoicous)
AATCACCGCGACCCGCCAAGAACACACAGGGACGCCGAAACACACACACA
CACACACACACATACATATCATGCCAAGAACTCGAGCGAAGTAAATGGGT
GAACAAAAATATACAGAATTTACACTCTTCGGTACTGGATCGTTCCCGAC
AACGCGTGACCTTTGATCGGCGAACGCTCCGACCGCGCGCCCCCCGCGAG
CGTGCCCGTCACCCACCCTTCCAACAGCAGCAGACAACAAGGCAGCAAGG
AACAACGGTAAAATATCATCCCAGAGTACGCAGATCCTTCTCTTTGGTCA
AAATAGGTACATAAAGTATGTGTATCGTGCCAGGTCCGACAAGAGGCAAC
ACTCAGACAAATCCGCCCATCTCTTCACCCGCCCCTTCTCGCACACCTCA
CACCTCCATTCATCACTCTCTCTCTGCAGTCTCCTCTCCCACAAGACAGA
GAGAGAGAGGGATTAGACAGAAAAACCTCACGGACAAAAAACAAAAGCGC
CCGTCGCGAGACACAGGTAGAGATAAGGGCGAAGACCCCCCCGCCCCCCC
CCGTCCGACTGTTTTCTCGCGGGAGACACGGTTCCGACGTGACATCACAT
CCAACACAAATGCTGATGAGGGCAGGGCGGGTTTTAGCGACGGCAATCAA
TGCCTCGGTGAACCAAATCATGCTCGCCCAACAGACGAGGAAATCAGCCA
CAACTTTCATAATGTACCAGTACGGACAAACACACAAAATATAATCACGC
GCCATGGCAGAGCGTTCCGGGGACGCACTAGACAAAGTAAAAAGGCCTGG
TCAAGCACGCACACGTGTGCGAGACACCGTGGCACGTGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1436119..1436960+

>mRNA_C-linearis_contig9.16566.1 ID=mRNA_C-linearis_contig9.16566.1|Name=mRNA_C-linearis_contig9.16566.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at C-linearis_contig9:1436119..1436960+ (Chordaria linearis ClinC8C monoicous)
ATGTGTATCGTGCCAGGTCCGACAAGAGGCAACACTCAGACAAATCCGCC
CATCTCTTCACCCGCCCCTTCTCGCACACCTCACACCTCCATTCATCACT
CTCTCTCTGCAGTCTCCTCTCCCACAAGACAGAGAGAGAGAGGGATTAGA
CAGAAAAACCTCACGGACAAAAAACAAAAGCGCCCGTCGCGAGACACAGG
TAGAGATAAGGGCGAAGACCCCCCCGCCCCCCCCCGTCCGACTGTTTTCT
CGCGGGAGACACGGTTCCGACGTGACATCACATCCAACACAAATGCTGAT
GAGGGCAGGGCGGGTTTTAGCGACGGCAATCAATGCCTCGGTGAACCAAA
TCATGCTCGCCCAACAGACGAGGAAATCAGCCACAACTTTCATAATGTAC
CAGTACGGACAAACACACAAAATATAATCACGCGCCATGGCAGAGCGTTC
CGGGGACGCACTAGACAAAGTAAAAAGGCCTGGTCAAGCACGCACACGTG
TGCGAGACACCGTGGCACGTGGGGGATGTGTATCGTGCCAGGTCCGACAA
GAGGCAACACTCAGACAAATCCGCCCATCTCTTCACCCGCCCCTTCTCGC
ACACCTCACACCTCCATTCATCACTCTCTCTCTGCAGTCTCCTCTCCCAC
AAGACAGAGAGAGAGAGGGATTAGACAGAAAAACCTCACGGACAAAAAAC
AAAAGCGCCCGTCGCGAGACACAGGTAGAGATAAGGGCGAAGACCCCCCC
GCCCCCCCCCGTCCGACTGTTTTCTCGCGGGAGACACGGTTCCGACGTGA
CATCACATCCAACACAAATGCTGATGAGGGCAGGGCGGGTTTTAGCGACG
GCAATCAATGCCTCGGTGAACCAAATCATGCTCGCCCAACAGACGAGGAA
ATCAGCCACAACTTTCATAATGTACCAGTACGGACAAACACACAAAATAT
AATCACGCGCCATGGCAGAGCGTTCCGGGGACGCACTAGACAAAGTAAAA
AGGCCTGGTCAAGCACGCACACGTGTGCGAGACACCGTGGCACGTGGGGG
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