mRNA_C-linearis_contig9.16564.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16564.1
Unique NamemRNA_C-linearis_contig9.16564.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1430954..1431334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size382
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.9912193-UTR-C-linearis_contig9:1430953..14309891622930705.9912193-UTR-C-linearis_contig9:1430953..1430989Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1430954..1430989 +
1690881206.8270526-UTR-C-linearis_contig9:1430953..14309891690881206.8270526-UTR-C-linearis_contig9:1430953..1430989Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1430954..1430989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.00918-CDS-C-linearis_contig9:1430989..14313341622930706.00918-CDS-C-linearis_contig9:1430989..1431334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1430990..1431334 +
1690881206.8401537-CDS-C-linearis_contig9:1430989..14313341690881206.8401537-CDS-C-linearis_contig9:1430989..1431334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1430990..1431334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16564.1prot_C-linearis_contig9.16564.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1430990..1431334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16564.1

>prot_C-linearis_contig9.16564.1 ID=prot_C-linearis_contig9.16564.1|Name=mRNA_C-linearis_contig9.16564.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=115bp
MMRDNVVLIIDRSSVGWALPNFRQFFMVWVAATLPISCVCLTMMGVCMRI
VVLCCVLCCAVLCCAVFPSLCGWLCHSFLLFDLGQPEGHCRVDMRSVAFL
LHSSLGNGGPPSGSW
back to top

mRNA from alignment at C-linearis_contig9:1430954..1431334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16564.1 ID=mRNA_C-linearis_contig9.16564.1|Name=mRNA_C-linearis_contig9.16564.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at C-linearis_contig9:1430954..1431334+ (Chordaria linearis ClinC8C monoicous)
TATTGTACTCTTCTACTGTAATTTGATTTGATTCCGATGATGAGAGATAA
CGTCGTATTGATCATCGATCGATCGTCGGTCGGTTGGGCTCTTCCCAACT
TTCGACAGTTTTTTATGGTGTGGGTAGCAGCCACGCTGCCGATCTCGTGT
GTCTGTCTGACTATGATGGGCGTGTGTATGCGTATTGTTGTGCTGTGCTG
TGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTCTTTCCTTCTTTGTGCG
GTTGGTTGTGCCATAGTTTCCTTCTTTTTGATTTGGGTCAACCGGAGGGG
CATTGTCGTGTCGATATGAGGTCGGTCGCGTTTCTTTTGCATAGTTCTCT
TGGTAATGGTGGCCCGCCATCGGGTTCTTGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1430954..1431334+

>mRNA_C-linearis_contig9.16564.1 ID=mRNA_C-linearis_contig9.16564.1|Name=mRNA_C-linearis_contig9.16564.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at C-linearis_contig9:1430954..1431334+ (Chordaria linearis ClinC8C monoicous)
ATGATGAGAGATAACGTCGTATTGATCATCGATCGATCGTCGGTCGGTTG
GGCTCTTCCCAACTTTCGACAGTTTTTTATGGTGTGGGTAGCAGCCACGC
TGCCGATCTCGTGTGTCTGTCTGACTATGATGGGCGTGTGTATGCGTATT
GTTGTGCTGTGCTGTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTCTT
TCCTTCTTTGTGCGGTTGGTTGTGCCATAGTTTCCTTCTTTTTGATTTGG
GTCAACCGGAGGGGCATTGTCGTGTCGATATGAGGTCGGTCGCGTTTCTT
TTGCATAGTTCTCTTGGTAATGGTGGCCCGCCATCGGGTTCTTGGATGAT
GAGAGATAACGTCGTATTGATCATCGATCGATCGTCGGTCGGTTGGGCTC
TTCCCAACTTTCGACAGTTTTTTATGGTGTGGGTAGCAGCCACGCTGCCG
ATCTCGTGTGTCTGTCTGACTATGATGGGCGTGTGTATGCGTATTGTTGT
GCTGTGCTGTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTCTTTCCTT
CTTTGTGCGGTTGGTTGTGCCATAGTTTCCTTCTTTTTGATTTGGGTCAA
CCGGAGGGGCATTGTCGTGTCGATATGAGGTCGGTCGCGTTTCTTTTGCA
TAGTTCTCTTGGTAATGGTGGCCCGCCATCGGGTTCTTGG
back to top