mRNA_C-linearis_contig9.16543.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16543.1
Unique NamemRNA_C-linearis_contig9.16543.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16543.1 vs. uniprot
Match: D7FQY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.060e-21
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 LGNVLIKASAGAANHGKFEIEYGNEVMIASLKKLIISIPRWTHLFPDTPKREALAGVR 174
            LGNVLIK+SA   NH KFEIEYG+E MIA LK+LI  IP+WTHLFPDTPK EALAGVR
Sbjct:  740 LGNVLIKSSADPVNHRKFEIEYGSETMIAPLKQLIEIIPKWTHLFPDTPKHEALAGVR 797
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY1_ECTSI2.060e-2177.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1236146..1236322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.9173133-CDS-C-linearis_contig9:1236145..12363221622930729.9173133-CDS-C-linearis_contig9:1236145..1236322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1236146..1236322 -
1690881219.493407-CDS-C-linearis_contig9:1236145..12363221690881219.493407-CDS-C-linearis_contig9:1236145..1236322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1236146..1236322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16543.1prot_C-linearis_contig9.16543.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1236146..1236322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16543.1

>prot_C-linearis_contig9.16543.1 ID=prot_C-linearis_contig9.16543.1|Name=mRNA_C-linearis_contig9.16543.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=59bp
LGNVLIKASAGAANHGKFEIEYGNEVMIASLKKLIISIPRWTHLFPDTPK
REALAGVR*
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mRNA from alignment at C-linearis_contig9:1236146..1236322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16543.1 ID=mRNA_C-linearis_contig9.16543.1|Name=mRNA_C-linearis_contig9.16543.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at C-linearis_contig9:1236146..1236322- (Chordaria linearis ClinC8C monoicous)
CTCGGGAACGTCCTCATCAAGGCGTCTGCTGGAGCAGCCAACCACGGCAA
ATTCGAAATCGAGTACGGGAACGAAGTGATGATCGCCTCTCTCAAGAAGT
TGATAATTTCCATCCCGCGGTGGACTCACTTGTTTCCGGACACTCCCAAG
CGCGAGGCCCTCGCTGGTGTGCGATAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1236146..1236322-

>mRNA_C-linearis_contig9.16543.1 ID=mRNA_C-linearis_contig9.16543.1|Name=mRNA_C-linearis_contig9.16543.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at C-linearis_contig9:1236146..1236322- (Chordaria linearis ClinC8C monoicous)
CTCGGGAACGTCCTCATCAAGGCGTCTGCTGGAGCAGCCAACCACGGCAA
ATTCGAAATCGAGTACGGGAACGAAGTGATGATCGCCTCTCTCAAGAAGT
TGATAATTTCCATCCCGCGGTGGACTCACTTGTTTCCGGACACTCCCAAG
CGCGAGGCCCTCGCTGGTGTGCGATAGCTCGGGAACGTCCTCATCAAGGC
GTCTGCTGGAGCAGCCAACCACGGCAAATTCGAAATCGAGTACGGGAACG
AAGTGATGATCGCCTCTCTCAAGAAGTTGATAATTTCCATCCCGCGGTGG
ACTCACTTGTTTCCGGACACTCCCAAGCGCGAGGCCCTCGCTGGTGTGCG
ATAG
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