mRNA_C-linearis_contig9.16533.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16533.1
Unique NamemRNA_C-linearis_contig9.16533.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 6.070e-86
Identity = 185/363 (50.96%), Postives = 227/363 (62.53%), Query Frame = 2 
Query:  428 GGLVSIRLIKAKKSYRIDLVADLHEGPRTRWTSEAIKYPKSNKNRRDHDAEDKFLNDWWPYHSGGSIVPRLRDFRHDIEAAEEATREKRPRDC-HQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA 1513
            G LVS+R  K+ K YR++L A +H G   RW S  IK PK     RD  AED+F   W P  S G+ VP       + EAA    REKRPRDC H +A+ + A   K GG R G+GRP+GS+G K +RE  ++     + G+ H A  A RDLP  M  A +   Q  E W PAFL RQ NRG  RK ALRKL K R Q EKA   +AACR   E    Y   V KEC  A AA  S GL E+V VSHAQA  L  +AL L+ VY  LL GA KR+AFE +A+F +VA  T+ +WE ++R KGHI+V Q G+HERRWILSLDEGLLV +R+W+R+N+T KGE NMTA  FREY+N  I+PE+A
Sbjct:   30 GELVSVRQEKSPKKYRVELTAHVH-GSEQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHTDASAGEAEAA--PPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAAT-SAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHIQVDQKGKHERRWILSLDEGLLVVVRQWVRVNSTKKGEPNMTADSFREYLNTVILPEVA 387
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 4.960e-72
Identity = 160/357 (44.82%), Postives = 207/357 (57.98%), Query Frame = 2 
Query:  440 SIRLIKAKKSYRIDLVADLHEGPRTRWTSEAIKYPKSNKNRRDHDAEDKFLNDWWPYHSGGSIVPRLRDFRHDIEAAEEATREKRPRDC-HQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPE 1507
            S+   KA K YR+ L A +H G R RW S   K+PK     RD  AED++   W P+   G+ VP       + EAA    REK   DC H + +   A P KRGG R GAGRP+GS+G K LR+  ++     + G+L  AQ   RDLP  M  A +   QQ E+  PAFL RQ NRG ++ AA                 +AACR   E    Y   V KEC  A A V S GL E+V VSH QA  L  +AL L  +Y  LL G +KR+AFE +A+F +VA  T+ +WE ++R KGHI+V Q G+HERRWILSLDEGLLV +R+ IR+N+   GE NM A+ FREY+NK+++P+
Sbjct:   43 SVHQHKAPKKYRVQLTAQVH-GSRQRWCSPYNKFPKGRTTGRDWAAEDRWAATWRPFFCSGN-VPHNDVRAREAEAA--PPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNDDLERGKLQCAQMVSRDLPGAMSDAVKEAHQQEEACRPAFLKRQSNRGLEKAAAA----------------SAACRSGWERGQDYFRVVIKECQSAVA-VTSAGLNESVLVSHTQAGSLQFKALALNGLYHKLLRGVSKRQAFEETAEFFEVAFSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQSIRVNSIKNGERNMIAEGFREYLNKDVLPQ 378
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.390e-64
Identity = 146/311 (46.95%), Postives = 188/311 (60.45%), Query Frame = 2 
Query:  614 SGGSIVPRLRDFRHDIEAAEEATREKRPRDCHQSAA---PDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAA--------AVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA 1513
            + G   P+LR+       +    REKR RDC           A P KRGG R GAGRP+GS+G K LR+  ++     + G+L  AQ   RDLP  M  A +   QQ E + PAFL RQ NRG  RK ALRKL K R Q EKA + +AACR   E    Y   V KEC   ++         V +T   E+V VSHAQA  L  +AL L+ +Y  LL G +KR+AFE +A+F +VA  T  +WE ++R KGHI+V Q G+HERRWILSLDEGLLV +R+WIR+N    GE NMTA+ FREY+NK+++P++A
Sbjct:   99 TAGRGFPKLRN-------SSXPPREKRLRDCQHRLCCGITGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHIQVNQRGKHERRWILSLDEGLLVMVRQWIRVNCIKNGEPNMTAEGFREYLNKDVLPQVA 402
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.280e-63
Identity = 139/276 (50.36%), Postives = 179/276 (64.86%), Query Frame = 2 
Query:  683 REKRPRDC-HQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPE 1507
            REKRPRDC H + +   A P KRGG R GAGRP+GS+G   LR+  ++     + G+L  AQ   RDLP  M  A +   QQ   + PAFL RQ NRG  RK ALRKL K + Q +K    +AACR   E        V KEC  A A V S GL E+V VSH+QA  L  +AL  + +Y  LL G +KR+AFE +A+F +VA  T+ +WE ++R KGHI+V Q G+HERRWILSLDEGLLV +R+WIR+N+   GE NMTA+ FREY+NK+++P+
Sbjct:   30 REKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIA-VTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQ 304
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.930e-62
Identity = 152/316 (48.10%), Postives = 187/316 (59.18%), Query Frame = 2 
Query:  428 GGLVSIRLIKAKKSYRIDLVADLHEGPRTRWTSEAIKYPKSNKNRRDHDAEDKFLNDWWPYHSGGSIVPRLRDFRHDIEAAEEATREKRPRDC-HQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERR 1372
            G LVS+R  K+ K YR++L A +H G   RW S  IK PK     RD  AED+F   W P  S G+ VP       + EAA    REKRPRDC H +A+ + A   K GG R G+GRP+GS+G K +RE  ++     + G+ H A  A RDLP  M  A +   Q  E W PAFL RQ NRG  RK ALRKL K R Q EKA   +AACR   E    Y   V KEC  A AA  S GL E+V VSHAQA  L  +AL L+ VY  LL GA KR+AFE +A+F +VA  T+ +WE ++R KGHI++ Q G+HERR
Sbjct:   30 GELVSVRQEKSPKKYRVELTAHVH-GSEQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHTDASAGEAEAA--PPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAAT-SAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHIQMDQKGKHERR 340
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 9.590e-50
Identity = 98/156 (62.82%), Postives = 109/156 (69.87%), Query Frame = 2 
Query:  359 MSVLFADKTWRHFKDKCEDVLGDGGLVSIRLIKAKKSYRIDLVADLHEGPRTRWTSEAIKYPKSNKNRRDHDAEDKFLNDWWPYHSGGSIVPRLRDFRHDIEAAEEA----TREKRPRDCHQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRER 814
            MS  F+D+TWR+F++KC  +LGDG +VS  L    KSYRI LVADL EG R  W S  IK PK  K  RD  AE KF  DW P   GG++V RLRD RH IEA  EA     R KRPRDCH SAA +HARPEKRGGKREGAGRPRGSFGPK LR+R
Sbjct:    1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPS-EGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAA-EHARPEKRGGKREGAGRPRGSFGPKKLRQR 154
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.710e-46
Identity = 129/287 (44.95%), Postives = 161/287 (56.10%), Query Frame = 2 
Query:  662 EAAEEATREKRPRDC-HQSAAPDHARPEKRGGKREGAGRPRGSFGPKALRERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPA--FLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA 1513
            EA     REKRPRDC H +A+   A P  RGG R GAGRP+GS+G K L +  ++     + G+L  AQ   RDLP  M  A +   QQ E + PA  FL RQ N    RK ALRKL K R Q EKA   +AACR   E    Y   V KEC  A A V S GL          A  L  +AL L+ +Y  LL G  KR+AFE +A+F  VA  T+ +WE ++R KGHI+V Q G+HERRWILSLDEGLLV                 M ++ F EY+NK+++P++A
Sbjct:   65 EAEAAPPREKRPRDCQHAAASTGDAPPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAMSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVA-VTSAGLN---------AGSLQFKALALKGLYHKLLRGVPKRQAFEETAEFFQVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLV-----------------MPSEGFHEYLNKDVLPQVA 321
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.810e-34
Identity = 70/123 (56.91%), Postives = 96/123 (78.05%), Query Frame = 2 
Query: 1145 EEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA 1513
            +E+V VSHAQA  L  +AL L+ +Y  LL G +KR+AFE +A+F +VA  T  +WE ++R KGHI+V Q G+HERRWILSLDEGLLV +R+WIR+N+   GE NMTA+ FREY+NK+++P++A
Sbjct:   54 KESVFVSHAQAGSLQFKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQVA 176
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.150e-34
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 2 
Query:  902 AARYTEQQLESWTPAFLLRQRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKECLGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAG 1357
            A++  ++  + W PAFL RQ NRG  RK ALRKL K R Q EKA L +AAC+   E+ + Y   V KEC GA AA  S GLEE +DVSHAQA KL+ +A  LR VY  LL G +KR+AFE SA+FL++A+ T++QWE  +R KGHI + Q G
Sbjct:    4 ASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAAT-SAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHIVLDQGG 154
[Close]
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.690e-31
Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = 2 
Query: 1142 LEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAFESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVNIRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA 1513
            L+E +DVSHAQA KL+ +A  LR VY  LL G +KR+AFE SA+FL V++ T++QWE  +R KG I  G   RH RRWILSLDEGLL  IR +IR N    GE NMTAQ F +YINK I+PEIA
Sbjct:    3 LQEPIDVSHAQAGKLLTKAHALRGVYSKLLKGVSKRQAFEESAEFLQVSVGTIKQWELEYRTKGRIVTG---RHARRWILSLDEGLLAVIRFYIRNNAVKNGEPNMTAQTFCDYINKVILPEIA 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JU25_9PHAE6.070e-8650.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K534_9PHAE4.960e-7244.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE2.390e-6446.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE2.280e-6350.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE3.930e-6248.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G5I2_ECTSI9.590e-5062.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGM4_9PHAE3.710e-4644.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE1.810e-3456.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V5_ECTSI5.150e-3453.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KFI8_9PHAE3.690e-3159.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1143572..1148095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1514
Cds size1155
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16533.1prot_C-linearis_contig9.16533.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1146319..1148095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.5543084-UTR-C-linearis_contig9:1143571..11436181622930727.5543084-UTR-C-linearis_contig9:1143571..1143618Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1143572..1143618 +
1690881218.3767009-UTR-C-linearis_contig9:1143571..11436181690881218.3767009-UTR-C-linearis_contig9:1143571..1143618Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1143572..1143618 +
1622930727.5712922-UTR-C-linearis_contig9:1146007..11463181622930727.5712922-UTR-C-linearis_contig9:1146007..1146318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1146008..1146318 +
1690881218.3912003-UTR-C-linearis_contig9:1146007..11463181690881218.3912003-UTR-C-linearis_contig9:1146007..1146318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1146008..1146318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.58775-CDS-C-linearis_contig9:1146318..11471071622930727.58775-CDS-C-linearis_contig9:1146318..1147107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1146319..1147107 +
1690881218.4039686-CDS-C-linearis_contig9:1146318..11471071690881218.4039686-CDS-C-linearis_contig9:1146318..1147107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1146319..1147107 +
1622930727.6082854-CDS-C-linearis_contig9:1147375..11475701622930727.6082854-CDS-C-linearis_contig9:1147375..1147570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1147376..1147570 +
1690881218.4132032-CDS-C-linearis_contig9:1147375..11475701690881218.4132032-CDS-C-linearis_contig9:1147375..1147570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1147376..1147570 +
1622930727.626424-CDS-C-linearis_contig9:1147924..11480951622930727.626424-CDS-C-linearis_contig9:1147924..1148095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1147925..1148095 +
1690881218.4248543-CDS-C-linearis_contig9:1147924..11480951690881218.4248543-CDS-C-linearis_contig9:1147924..1148095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1147925..1148095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16533.1

>prot_C-linearis_contig9.16533.1 ID=prot_C-linearis_contig9.16533.1|Name=mRNA_C-linearis_contig9.16533.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=385bp
MSVLFADKTWRHFKDKCEDVLGDGGLVSIRLIKAKKSYRIDLVADLHEGP
RTRWTSEAIKYPKSNKNRRDHDAEDKFLNDWWPYHSGGSIVPRLRDFRHD
IEAAEEATREKRPRDCHQSAAPDHARPEKRGGKREGAGRPRGSFGPKALR
ERLERYKAAEKDGRLHDAQNALRDLPNVMRQAARYTEQQLESWTPAFLLR
QRNRGHDRKAALRKLRKARKQWEKALLEAAACRQSREEAVAYCCEVEKEC
LGAAAAVHSTGLEEAVDVSHAQAAKLMQRALGLRVVYQNLLAGATKREAF
ESSAKFLDVALRTVEQWERTFRDKGHIEVGQAGRHERRWILSLDEGLLVN
IRRWIRLNTTIKGEANMTAQKFREYINKEIMPEIA
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mRNA from alignment at C-linearis_contig9:1143572..1148095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16533.1 ID=mRNA_C-linearis_contig9.16533.1|Name=mRNA_C-linearis_contig9.16533.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4524bp|location=Sequence derived from alignment at C-linearis_contig9:1143572..1148095+ (Chordaria linearis ClinC8C monoicous)
GAGAACTTCACGCCGGAATAAATAAAAAAAAAGAACCGCTATGCAGAGTC
TTCCTTCTTCCCCTCGCTGCCTTGGCAAGGCTTTGGTCTAGGCATGGCCT
ACAGCGAGGGGGGGGGTCTTTCTAGCGAGCAAGGCTAGACTCACCCTCAA
GGAGCCCGATACCTTCTTGCTGCCGCTCATCCGCCGTGAGGCGTGCGCAG
TGGTAGAGTTGGGTGGGCACTGATGTGTCAGGCACAAAAGTCCAGAGGTG
CGCGGGCCTTTATGGCCGTCGGTGTAGGCAGCAATGCCCATCTCACTTTT
GTGCGCGGAGGCAGACACCATCAGGGGTGAAAGGACACTATGTACACGGC
CCTAGGTTTGCTAGAGGGAGCTGTATTGTCTGAGTTACCAGGCTTCGCCA
CCAAAGGAGGAGGGAGCTGGTGGTGACGAGCTGATTGGGGGTGGTTGACC
CCTTTGGCGCGAGAATTTTTGTTTCAAGACCAAGAACCTTGAGTACAACG
AGGGAGAAAGCGAGGAACCGACTGGGAAGGACGACAACGAGAGCATGTAC
GGACGGAGCGGGTCGAGTGTGGTCATGCTACTACAGCGTCACCGGCGACA
TCGGCTCAGCGTCACCGGAGACATCGGCCCATGGCGACGGACAAACATTA
TTTTGTGACTGTCAATTTTTTGCGTTTTCTTCCCCCTGTATCGGTGCTGG
GTGTGTGTGTGTGTGACGTCTGCACTGGTTTTGTAGAGAGACGCGTCAGA
GATGGCGTGATACCCCAGGTGCCTTTTTTGGGTAAAACCTGCATCGTGGA
AGACCCCTTTAGTGTGGAACGATTTCTTAGTCAGTGTCAGTGTTACACTG
CTGCACCCAACCGAGACGATCGGGATCGATTCGTGGGTGATTGTCAAGTG
CAAGATGGCTTTGGTTGTTTGTTCTCTTTCACTGTATGTCCGCGGACACA
TTCTGACAGCACTTCAGACGGCAGCCGTGCTCCGCCAGCTTCTTGTTCCA
CGTGCCTACCATTGTGTTTGTACAGACAGCACTCCAGACAGCAAATCGCT
GTAGTCGGCAAAACGTTTTTTGGTAGAGAGTGAAACAGGGAGGGGGGGGT
GATGCTGCTGTAGTCGAACGGTGGGGCGGACGTGTAGGTCAGTTGTGGAC
ACGCATAGGTGTGCAGGGATTAGATGTACCTCTTCGGGCTTGTGTACCTT
TTTTCGCTGCTAGATGTGCGTTCCTTTAGATCTTCTGATGGCTCTAGTAC
TTTCGTGACCACGGGCTGGAGCATTTGCTAGATTTTGGCATTTACAACTG
ACATCCGGTTTTATGTGAAGTTAACAACAACAACAACATAGGCACACACA
CCCTGTTTATTCAGTACATACATGTCCGCCCAGCGGGCATGTTCGGCATT
TCGTGTGTGCGCGGAGGCAGATGACACTGTATCCGATAGCTGTGGGTGCA
CTCAGCAGTGGACACGGTGTGTAGGAGGAACTCGGCGATGAGGACGGAGG
GGAGGTCACTGACTCGGCGACAAGGACGGAGCGGAGGTCGCTGGCGGGCG
GATGTGGTCGGGTCGAACCCTCTGCTCGTGAAAAACCAAGACCAAGCACC
GGAGTGCATCATGAAGGAGGAGGGATACCGCACGAAGGAGCAGAAGGGGC
GACGGACTAACGACAACGAGAGATCACGAGACCATGGACGTGGGCGAGGA
TGGACGAGAGCGCCTGGAGCTGGCCTCGCGAAAGGAAGAGCGAAGAACAG
AGAGAGGAGCAAGAAGATGAATTTTTACCGATTGTGTCAAAAATTTGTTG
CTCTTGCATTAAATACATGCAGAGGGTCTTTTGTAGGGCACTCCGGACTA
ACCCTGTGTACGCCGATGATACCCACTAGCCGTGAGGCTAGATTGTGATT
AGGTGAACACATGACTTGTCTGTCGCATTTTGTTAGACTTGCATTTGTTT
TGACTTGAGCGGTCGAAGAGCCGTCTCCCTGCTCAATTTTTCTGATTTTT
TGGATCTTCCTATTATTCTTTCGTTTACGTGCCGTCTCCGCCGCGGGTTT
GCTGGGACGGTCTATTGAGCAGCACTCCAGACAGCAGTGCAGTAGGTCTA
CTTCGGGGATTTATGTCTGTGACGCTCGGATTTGTTGCAGACAGGATTTT
CGTGACGGGTCAACTTATTGCTGTAGTTCGATTGGGCGTTCTCTATATTG
ATCCGTGGTGCAGGCAGGTTGCCTCACCCTCGTGTGTTTTTGTGGTTTTA
TTTTGGTTTTCCGCTAGCCACGTTATTATGGTTTTTTGGGATATTTATGG
TAGGCTCCTTGCGCTCTGTGACCACGGGAATTGGCCGTGTCTGTTGGATC
AGTACGGACGAAGGGGGGTACTGGGTGGAGAGACCGGGATGGTTTTTAAT
GTGAAGACAACAACAACAACAATAATATATATGAAGCTCTGGCCAGGAGA
TTTCGAATGAGCCATAGTTTTTCGCGGGGTTCGCGCTGCGGAAAAAGTTA
TGGGCATACATCCATTGTCTTAGAGAGCACTTCATCCCACTAAAACCCTT
ATATCTCAGCAACCACGTCGATTCCCGGAAAAACTCGAGCAGATATGGAA
AGCTCTCTCCTTCACCATTTTTAATGCGGCGGAACCATTCCCGAGCTCTG
CTGTGAAACGCTCGAAAAAAATCAGAACCTCATTTTCAAATTTTCTTCTC
CACATCAAGTCCAACGGCTGATAAACAAAAACCTTCCACGCAAGGCCATG
TCGGTGCTGTTCGCTGACAAGACATGGAGACACTTCAAAGACAAGTGTGA
GGATGTTTTGGGAGACGGTGGGCTTGTCAGCATCAGGCTAATCAAGGCGA
AAAAGTCATATCGCATAGACCTTGTAGCGGACCTTCACGAGGGCCCCAGA
ACGCGGTGGACGAGCGAGGCGATCAAGTACCCAAAGAGCAACAAGAACCG
CCGCGACCATGACGCCGAAGACAAGTTCTTGAACGATTGGTGGCCATACC
ACTCAGGGGGCAGCATCGTACCGCGCCTCCGAGACTTCAGGCACGACATT
GAGGCGGCTGAGGAAGCAACTCGAGAAAAGAGACCGCGGGACTGTCATCA
AAGCGCCGCACCCGATCATGCACGCCCCGAGAAGCGCGGCGGCAAGCGCG
AAGGCGCAGGCAGGCCACGTGGCAGCTTTGGCCCGAAGGCTCTACGCGAG
AGACTGGAACGGTACAAGGCAGCGGAGAAGGACGGGCGGCTCCATGACGC
GCAGAATGCTCTGCGCGATCTTCCGAATGTCATGCGGCAGGCGGCACGAT
ATACGGAGCAGCAGCTCGAGAGCTGGACGCCGGCTTTCCTCCTCAGGCAG
AGGAACAGGGGACACGACAGGAAGGCTGCTCTGCGTAAGCTGAGGAAGGC
GAGGAAGCAGTGGGAAAAAGCACTCTTGGAAGCCGCAGCCTGTAGACAGA
GCCGGGAGGAAGCAGTCGCCTACTGCTGCGAGGTCGAGAAGGAATGCCTC
GGAGCTGCTGCTGCAGTGCACTCGACTGGGCTGGAGGTGAGAGCAGTTGC
GGTATTTTTAGCCGTGTTGGATGTGCTCTTGTCTCCGCTGAAAGACATGC
GCTGCTGCCACTACTGCTGTGTACTCTACGTATTCCTCTGTGCGGTGTAC
AGCAGTATTGCCGCTGCGGTACATTATACAAACTTGTGTCTGTTTCTGTA
CCAAAAACAAGTGCGTGTGCAATCGAATGACCTCCCCCACGTTTTTGCTC
TGCGTCGTATCCCTTTTTGTCATCGTTACATTGCTCTACGTACGGCTCTT
GCAGGAGGCTGTGGACGTTTCGCACGCACAAGCCGCCAAGCTGATGCAAA
GGGCGCTCGGCCTGCGGGTGGTGTACCAGAACCTGCTGGCGGGAGCGACG
AAAAGAGAAGCGTTCGAGAGCAGTGCCAAGTTCCTGGATGTGGCGTTGAG
AACGGTGGAACAATGGGAGCGCACGTTCAGAGACAAGGGACACATCGAGG
TGCACGCAATGTATATATATGTAGTTTCGTTTCGTTCCGTCTTTGATTGT
ATGTATGCATGTGTGTGTTTCGAGGGGAGAGCTCTGTATTTTTTGTGAGT
GTTTTTCGTCGCATCTATTGTACAACATCATGTGTGTAAAATTTCTCTCG
TTCCGCCATCCTACGAAACCAACCGTTTGGCGGGCTGTGACTGCTGTAAA
ATGTGTGCGCTTGCCAAACCTGGTGCTTCGTGCGAAGTTCACTGTGCATC
GTTCCAACAGCAAGCTCTCACTCTTTTTTTCTGAACAACCCTCTGGTGCG
TTTTCCACACACCGCGCCCATCTTGGTCGTATGCATGCTTGAACCAAATA
CAGGTGGGTCAAGCGGGGAGGCACGAGCGGCGGTGGATCCTGAGCTTGGA
CGAGGGTCTTCTGGTGAACATCCGCCGGTGGATCCGCCTCAACACTACCA
TCAAAGGGGAGGCCAACATGACAGCTCAGAAGTTCCGAGAGTACATCAAC
AAGGAGATCATGCCGGAGATCGCA
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Coding sequence (CDS) from alignment at C-linearis_contig9:1143572..1148095+

>mRNA_C-linearis_contig9.16533.1 ID=mRNA_C-linearis_contig9.16533.1|Name=mRNA_C-linearis_contig9.16533.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at C-linearis_contig9:1143572..1148095+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGTGCTGTTCGCTGACAAGACATGGAGACACTTCAAAGACAAGTG
TGAGGATGTTTTGGGAGACGGTGGGCTTGTCAGCATCAGGCTAATCAAGG
CGAAAAAGTCATATCGCATAGACCTTGTAGCGGACCTTCACGAGGGCCCC
AGAACGCGGTGGACGAGCGAGGCGATCAAGTACCCAAAGAGCAACAAGAA
CCGCCGCGACCATGACGCCGAAGACAAGTTCTTGAACGATTGGTGGCCAT
ACCACTCAGGGGGCAGCATCGTACCGCGCCTCCGAGACTTCAGGCACGAC
ATTGAGGCGGCTGAGGAAGCAACTCGAGAAAAGAGACCGCGGGACTGTCA
TCAAAGCGCCGCACCCGATCATGCACGCCCCGAGAAGCGCGGCGGCAAGC
GCGAAGGCGCAGGCAGGCCACGTGGCAGCTTTGGCCCGAAGGCTCTACGC
GAGAGACTGGAACGGTACAAGGCAGCGGAGAAGGACGGGCGGCTCCATGA
CGCGCAGAATGCTCTGCGCGATCTTCCGAATGTCATGCGGCAGGCGGCAC
GATATACGGAGCAGCAGCTCGAGAGCTGGACGCCGGCTTTCCTCCTCAGG
CAGAGGAACAGGGGACACGACAGGAAGGCTGCTCTGCGTAAGCTGAGGAA
GGCGAGGAAGCAGTGGGAAAAAGCACTCTTGGAAGCCGCAGCCTGTAGAC
AGAGCCGGGAGGAAGCAGTCGCCTACTGCTGCGAGGTCGAGAAGGAATGC
CTCGGAGCTGCTGCTGCAGTGCACTCGACTGGGCTGGAGATGTCGGTGCT
GTTCGCTGACAAGACATGGAGACACTTCAAAGACAAGTGTGAGGATGTTT
TGGGAGACGGTGGGCTTGTCAGCATCAGGCTAATCAAGGCGAAAAAGTCA
TATCGCATAGACCTTGTAGCGGACCTTCACGAGGGCCCCAGAACGCGGTG
GACGAGCGAGGCGATCAAGTACCCAAAGAGCAACAAGAACCGCCGCGACC
ATGACGCCGAAGACAAGTTCTTGAACGATTGGTGGCCATACCACTCAGGG
GGCAGCATCGTACCGCGCCTCCGAGACTTCAGGCACGACATTGAGGCGGC
TGAGGAAGCAACTCGAGAAAAGAGACCGCGGGACTGTCATCAAAGCGCCG
CACCCGATCATGCACGCCCCGAGAAGCGCGGCGGCAAGCGCGAAGGCGCA
GGCAGGCCACGTGGCAGCTTTGGCCCGAAGGCTCTACGCGAGAGACTGGA
ACGGTACAAGGCAGCGGAGAAGGACGGGCGGCTCCATGACGCGCAGAATG
CTCTGCGCGATCTTCCGAATGTCATGCGGCAGGCGGCACGATATACGGAG
CAGCAGCTCGAGAGCTGGACGCCGGCTTTCCTCCTCAGGCAGAGGAACAG
GGGACACGACAGGAAGGCTGCTCTGCGTAAGCTGAGGAAGGCGAGGAAGC
AGTGGGAAAAAGCACTCTTGGAAGCCGCAGCCTGTAGACAGAGCCGGGAG
GAAGCAGTCGCCTACTGCTGCGAGGTCGAGAAGGAATGCCTCGGAGCTGC
TGCTGCAGTGCACTCGACTGGGCTGGAGGAGGCTGTGGACGTTTCGCACG
CACAAGCCGCCAAGCTGATGCAAAGGGCGCTCGGCCTGCGGGTGGTGTAC
CAGAACCTGCTGGCGGGAGCGACGAAAAGAGAAGCGTTCGAGAGCAGTGC
CAAGTTCCTGGATGTGGCGTTGAGAACGGTGGAACAATGGGAGCGCACGT
TCAGAGACAAGGGACACATCGAGGAGGCTGTGGACGTTTCGCACGCACAA
GCCGCCAAGCTGATGCAAAGGGCGCTCGGCCTGCGGGTGGTGTACCAGAA
CCTGCTGGCGGGAGCGACGAAAAGAGAAGCGTTCGAGAGCAGTGCCAAGT
TCCTGGATGTGGCGTTGAGAACGGTGGAACAATGGGAGCGCACGTTCAGA
GACAAGGGACACATCGAGGTGGGTCAAGCGGGGAGGCACGAGCGGCGGTG
GATCCTGAGCTTGGACGAGGGTCTTCTGGTGAACATCCGCCGGTGGATCC
GCCTCAACACTACCATCAAAGGGGAGGCCAACATGACAGCTCAGAAGTTC
CGAGAGTACATCAACAAGGAGATCATGCCGGAGATCGCAGTGGGTCAAGC
GGGGAGGCACGAGCGGCGGTGGATCCTGAGCTTGGACGAGGGTCTTCTGG
TGAACATCCGCCGGTGGATCCGCCTCAACACTACCATCAAAGGGGAGGCC
AACATGACAGCTCAGAAGTTCCGAGAGTACATCAACAAGGAGATCATGCC
GGAGATCGCA
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