mRNA_C-linearis_contig9.16532.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 353 bits (907), Expect = 3.570e-108 Identity = 198/340 (58.24%), Postives = 242/340 (71.18%), Query Frame = 1
Query: 667 RLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
RLGADA L+ + +G +R+ + + + QTA + HR V + V D VLKEE+++ L V + A V ENTRAL AS+ AL+ + SNIGR AYNTV+AAAAGA +HTC P++PXXXXXXXXX G VSL RAQSLGVR TFR A RM TDH+IPP +A+E+GRY W RK RSD D RV LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+ LKAELL ED++F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++ L+ ++H +C+CTC WCDG GC +W
Sbjct: 101 RLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRDGVKQSVLEDDVLKEELRELLRVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGA-QHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKW 439
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 353 bits (907), Expect = 1.850e-104 Identity = 198/340 (58.24%), Postives = 242/340 (71.18%), Query Frame = 1
Query: 667 RLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
RLGADA L+ + +G +R+ + + + QTA + HR V + V D VLKEE+++ L V + A V ENTRAL AS+ AL+ + SNIGR AYNTV+AAAAGA +HTC P++PXXXXXXXXX G VSL RAQSLGVR TFR A RM TDH+IPP +A+E+GRY W RK RSD D RV LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+ LKAELL ED++F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++ L+ ++H +C+CTC WCDG GC +W
Sbjct: 725 RLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRDGVKQSVLEDDVLKEELRELLRVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGA-QHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKW 1063
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 310 bits (793), Expect = 3.550e-95 Identity = 172/341 (50.44%), Postives = 221/341 (64.81%), Query Frame = 1
Query: 664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEE----RVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRWS 1674
+R GADAALS G R+ G+ E +R + E+ R+ +++++NDPVL E ++ L E +V A+ NTRAL ASL AL+ +C S+IG Y T LA AAGAGEHTC+ + E +GGVSLA+RA SLG+R +TF +A RM T+H I P A EG Y + RKTRSD T+P V LA +WH+D +SRA+G+SGK M++ SKK H RR+LM GD V+R FLE + ALK+ LL +DS F DPGRTTFLSTRCGCLV+P SQCACQIHTQQ LYLE+L +L+GS+H DC+C C+WCD GC+RWS
Sbjct: 94 KRKGADAALSDPLALAHD---GGTRS--GATPETSREEAVAEERRSSAMDLMQNDPVLMERVRAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVE-SGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWS 427
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 310 bits (793), Expect = 3.420e-91 Identity = 172/341 (50.44%), Postives = 221/341 (64.81%), Query Frame = 1
Query: 664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEE----RVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRWS 1674
+R GADAALS G R+ G+ E +R + E+ R+ +++++NDPVL E ++ L E +V A+ NTRAL ASL AL+ +C S+IG Y T LA AAGAGEHTC+ + E +GGVSLA+RA SLG+R +TF +A RM T+H I P A EG Y + RKTRSD T+P V LA +WH+D +SRA+G+SGK M++ SKK H RR+LM GD V+R FLE + ALK+ LL +DS F DPGRTTFLSTRCGCLV+P SQCACQIHTQQ LYLE+L +L+GS+H DC+C C+WCD GC+RWS
Sbjct: 94 KRKGADAALSDPLALAHD---GGTRS--GATPETSREEAVAEERRSSAMDLMQNDPVLMERVRAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVE-SGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWS 427
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE) HSP 1 Score: 255 bits (652), Expect = 5.920e-79 Identity = 117/174 (67.24%), Postives = 139/174 (79.89%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
M TDH+IPP +A+E+GRY W RK RSD D RV LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+RKFL+WPE+ LKAELL EDS+F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++ L+ ++H +C+CTC WCDG GC +W
Sbjct: 1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKW 174
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE) HSP 1 Score: 256 bits (655), Expect = 9.850e-78 Identity = 114/173 (65.90%), Postives = 139/173 (80.35%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRW 1671
M TDH+IPP A+E+GRY W RK R+D D RV +LA R+WH+D ISRASGDSG + +WR SKK GE YH RR+LM++GD+V+RKFL+WPE+ LKAELL EDS+F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LY ++ L+ ++H +CECTC+WCDG GC +W
Sbjct: 1 MHKTDHTIPPKDALEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKW 173
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE) HSP 1 Score: 240 bits (613), Expect = 4.900e-68 Identity = 113/174 (64.94%), Postives = 136/174 (78.16%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
M TDH+IPP +A+E+GRY W RK RSD D RV LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+ LKAELL EDS+F DPGRT FLSTRCGCLVEPK+S CACQIHTQQ LYL+ + L+ ++H +C+CTC CDG GC +W
Sbjct: 1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKW 173
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.810e-66 Identity = 139/224 (62.05%), Postives = 159/224 (70.98%), Query Frame = 1
Query: 661 RRRLGADAALSXXXXXXXXIVAGSKRNGRGSEA-----ERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDS 1317
R R+ AD ++ I +G RG EA + R T EK RA+V+EMV DPV +EE++ L V E V AVH ENTR +AASLAAL+ +SNIGRVAY TVLAA AGAGEHTCSP +PXXXXXXXXX EP GGVS AQRA+SLGVR KTFR AH+RM TDH+IPP QA+EEGRYCW RKTRSDATD RV ELA R+WH D +SRASGDS
Sbjct: 35 RTRVNADLEVAASDPVQAAITSGP----RGGEAAPRPAKAPRKPTRVEKRRADVLEMVRKDPVSEEEMRTMLGVQGLEGVAAVHAENTRTMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVSFAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDS 254
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE) HSP 1 Score: 224 bits (571), Expect = 6.870e-66 Identity = 128/182 (70.33%), Postives = 144/182 (79.12%), Query Frame = 1
Query: 772 VQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDS 1317
+Q EK RA+V+EMV DPVL+EE++ L V E V A H ENTRA+AASLAAL+ +SNIGRVAY TVLAA AGAGEHTCSP +PXXXXXXXXX EP GGVS AQRA+SLGVR KTFR AH+RM TDH+IPP QA+EEGRYCW RKTRSDATD V ELA R+WH D +SRASGDS
Sbjct: 17 LQQRVEKRRADVLEMVRKDPVLEEEMRTVLGVQGLEGVAAAHAENTRAMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVSFAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDEHVLELAIRFWHCDDVSRASGDS 198
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K647_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K647_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.370e-63 Identity = 134/289 (46.37%), Postives = 174/289 (60.21%), Query Frame = 1
Query: 664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCG 1518
+R GAD ALS + S G+ E +R + A E+ R+ +E+++ D VL E ++ L S ++ A V+ NTRAL ASL AL+ + S+IG AY T LA AAGAGEHTCS N AEP GGVS A+RA+SLG+R +TF +A +RM T+H I P AV +G Y + RKTRSD T+P V LA +WH+D +SRA K M++ SKK H RR+LM GD+V+R FLE + ALK LL +DS+F DPGRTTFLSTRCG
Sbjct: 36 KRKGADVALSDPLALAHDVGTRS-----GATPEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAAVNAANTRALRASLQALKRHSNSSIGWTAYTTALATAAGAGEHTCSDPNLCHPGKRCKPAEP-GGVSFAERAKSLGIRYETFSDARVRMHNTNHDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSRA------KNMYKESKKRDAPSHPRRQLMHKGDRVWRMFLESRRYLALKGRLLEQDSSFTDPGRTTFLSTRCG 312 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16532.1 >prot_C-linearis_contig9.16532.1 ID=prot_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp MVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNIback to top mRNA from alignment at C-linearis_contig9:1140829..1143020+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16532.1 ID=mRNA_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2192bp|location=Sequence derived from alignment at C-linearis_contig9:1140829..1143020+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1140829..1143020+ >mRNA_C-linearis_contig9.16532.1 ID=mRNA_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig9:1140829..1143020+ (Chordaria linearis ClinC8C monoicous)back to top |