mRNA_C-linearis_contig9.16532.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16532.1
Unique NamemRNA_C-linearis_contig9.16532.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 3.570e-108
Identity = 198/340 (58.24%), Postives = 242/340 (71.18%), Query Frame = 1
Query:  667 RLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
            RLGADA L+        + +G +R+ + +     + QTA + HR  V + V  D VLKEE+++ L V +     A    V  ENTRAL AS+ AL+ +  SNIGR AYNTV+AAAAGA +HTC P++PXXXXXXXXX    G VSL  RAQSLGVR  TFR A  RM  TDH+IPP +A+E+GRY W  RK RSD  D RV  LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+  LKAELL ED++F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++   L+ ++H +C+CTC WCDG  GC +W
Sbjct:  101 RLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRDGVKQSVLEDDVLKEELRELLRVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGA-QHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKW 439          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 1.850e-104
Identity = 198/340 (58.24%), Postives = 242/340 (71.18%), Query Frame = 1
Query:  667 RLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
            RLGADA L+        + +G +R+ + +     + QTA + HR  V + V  D VLKEE+++ L V +     A    V  ENTRAL AS+ AL+ +  SNIGR AYNTV+AAAAGA +HTC P++PXXXXXXXXX    G VSL  RAQSLGVR  TFR A  RM  TDH+IPP +A+E+GRY W  RK RSD  D RV  LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+  LKAELL ED++F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++   L+ ++H +C+CTC WCDG  GC +W
Sbjct:  725 RLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRDGVKQSVLEDDVLKEELRELLRVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGA-QHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKW 1063          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.550e-95
Identity = 172/341 (50.44%), Postives = 221/341 (64.81%), Query Frame = 1
Query:  664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEE----RVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRWS 1674
            +R GADAALS           G  R+  G+  E +R +   E+ R+  +++++NDPVL E ++  L     E    +V A+   NTRAL ASL AL+ +C S+IG   Y T LA AAGAGEHTC+  +           E +GGVSLA+RA SLG+R +TF +A  RM  T+H I P  A  EG Y +  RKTRSD T+P V  LA  +WH+D +SRA+G+SGK  M++ SKK     H RR+LM  GD V+R FLE   + ALK+ LL +DS F DPGRTTFLSTRCGCLV+P  SQCACQIHTQQ LYLE+L +L+GS+H DC+C C+WCD  GC+RWS
Sbjct:   94 KRKGADAALSDPLALAHD---GGTRS--GATPETSREEAVAEERRSSAMDLMQNDPVLMERVRAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVE-SGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWS 427          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.420e-91
Identity = 172/341 (50.44%), Postives = 221/341 (64.81%), Query Frame = 1
Query:  664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEE----RVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRWS 1674
            +R GADAALS           G  R+  G+  E +R +   E+ R+  +++++NDPVL E ++  L     E    +V A+   NTRAL ASL AL+ +C S+IG   Y T LA AAGAGEHTC+  +           E +GGVSLA+RA SLG+R +TF +A  RM  T+H I P  A  EG Y +  RKTRSD T+P V  LA  +WH+D +SRA+G+SGK  M++ SKK     H RR+LM  GD V+R FLE   + ALK+ LL +DS F DPGRTTFLSTRCGCLV+P  SQCACQIHTQQ LYLE+L +L+GS+H DC+C C+WCD  GC+RWS
Sbjct:   94 KRKGADAALSDPLALAHD---GGTRS--GATPETSREEAVAEERRSSAMDLMQNDPVLMERVRAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVE-SGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWS 427          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 5.920e-79
Identity = 117/174 (67.24%), Postives = 139/174 (79.89%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
            M  TDH+IPP +A+E+GRY W  RK RSD  D RV  LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+RKFL+WPE+  LKAELL EDS+F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LYL++   L+ ++H +C+CTC WCDG  GC +W
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKW 174          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 9.850e-78
Identity = 114/173 (65.90%), Postives = 139/173 (80.35%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRW 1671
            M  TDH+IPP  A+E+GRY W  RK R+D  D RV +LA R+WH+D ISRASGDSG + +WR SKK GE YH RR+LM++GD+V+RKFL+WPE+  LKAELL EDS+F DPGRT FLSTRCGCLVEPKVSQCACQIHTQQ LY ++   L+ ++H +CECTC+WCDG GC +W
Sbjct:    1 MHKTDHTIPPKDALEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKW 173          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 4.900e-68
Identity = 113/174 (64.94%), Postives = 136/174 (78.16%), Query Frame = 1
Query: 1153 MRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIHTQQALYLESLRWLVGSVHIDCECTCDWCDG-EGCRRW 1671
            M  TDH+IPP +A+E+GRY W  RK RSD  D RV  LA R+WH+D ISRASGDSG K MWR SKK GE YH RR+LM++GD+V+ KFL+WPE+  LKAELL EDS+F DPGRT FLSTRCGCLVEPK+S CACQIHTQQ LYL+ +  L+ ++H +C+CTC  CDG  GC +W
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKW 173          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.810e-66
Identity = 139/224 (62.05%), Postives = 159/224 (70.98%), Query Frame = 1
Query:  661 RRRLGADAALSXXXXXXXXIVAGSKRNGRGSEA-----ERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDS 1317
            R R+ AD  ++        I +G     RG EA     +  R  T  EK RA+V+EMV  DPV +EE++  L V   E V AVH ENTR +AASLAAL+   +SNIGRVAY TVLAA AGAGEHTCSP +PXXXXXXXXX EP GGVS AQRA+SLGVR KTFR AH+RM  TDH+IPP QA+EEGRYCW  RKTRSDATD RV ELA R+WH D +SRASGDS
Sbjct:   35 RTRVNADLEVAASDPVQAAITSGP----RGGEAAPRPAKAPRKPTRVEKRRADVLEMVRKDPVSEEEMRTMLGVQGLEGVAAVHAENTRTMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVSFAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDS 254          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 6.870e-66
Identity = 128/182 (70.33%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  772 VQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDS 1317
            +Q   EK RA+V+EMV  DPVL+EE++  L V   E V A H ENTRA+AASLAAL+   +SNIGRVAY TVLAA AGAGEHTCSP +PXXXXXXXXX EP GGVS AQRA+SLGVR KTFR AH+RM  TDH+IPP QA+EEGRYCW  RKTRSDATD  V ELA R+WH D +SRASGDS
Sbjct:   17 LQQRVEKRRADVLEMVRKDPVLEEEMRTVLGVQGLEGVAAAHAENTRAMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVSFAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDEHVLELAIRFWHCDDVSRASGDS 198          
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Match: A0A6H5K647_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K647_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.370e-63
Identity = 134/289 (46.37%), Postives = 174/289 (60.21%), Query Frame = 1
Query:  664 RRLGADAALSXXXXXXXXIVAGSKRNGRGSEAERARVQTAEEKHRAEVVEMVENDPVLKEEIKQKLWVSDEERVDA----VHTENTRALAASLAALELNCKSNIGRVAYNTVLAAAAGAGEHTCSPENPXXXXXXXXXAEPAGGVSLAQRAQSLGVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTELAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRKFLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCG 1518
            +R GAD ALS        +   S     G+  E +R + A E+ R+  +E+++ D VL E ++  L  S  ++  A    V+  NTRAL ASL AL+ +  S+IG  AY T LA AAGAGEHTCS  N          AEP GGVS A+RA+SLG+R +TF +A +RM  T+H I P  AV +G Y +  RKTRSD T+P V  LA  +WH+D +SRA      K M++ SKK     H RR+LM  GD+V+R FLE   + ALK  LL +DS+F DPGRTTFLSTRCG
Sbjct:   36 KRKGADVALSDPLALAHDVGTRS-----GATPEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAAVNAANTRALRASLQALKRHSNSSIGWTAYTTALATAAGAGEHTCSDPNLCHPGKRCKPAEP-GGVSFAERAKSLGIRYETFSDARVRMHNTNHDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSRA------KNMYKESKKRDAPSHPRRQLMHKGDRVWRMFLESRRYLALKGRLLEQDSSFTDPGRTTFLSTRCG 312          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT99_9PHAE3.570e-10858.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.850e-10458.24MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JF90_9PHAE3.550e-9550.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE3.420e-9150.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE40_9PHAE5.920e-7967.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE9.850e-7865.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE4.900e-6864.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLZ5_9PHAE2.810e-6662.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE6.870e-6670.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K647_9PHAE1.370e-6346.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1140829..1143020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1681
Cds size867
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16532.1prot_C-linearis_contig9.16532.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1141838..1143020 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.4310853-UTR-C-linearis_contig9:1140828..11416081622930727.4310853-UTR-C-linearis_contig9:1140828..1141608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1140829..1141608 +
1690881218.3086574-UTR-C-linearis_contig9:1140828..11416081690881218.3086574-UTR-C-linearis_contig9:1140828..1141608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1140829..1141608 +
1622930727.4586763-UTR-C-linearis_contig9:1141804..11418371622930727.4586763-UTR-C-linearis_contig9:1141804..1141837Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1141805..1141837 +
1690881218.325094-UTR-C-linearis_contig9:1141804..11418371690881218.325094-UTR-C-linearis_contig9:1141804..1141837Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1141805..1141837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.4769118-CDS-C-linearis_contig9:1141837..11423421622930727.4769118-CDS-C-linearis_contig9:1141837..1142342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1141838..1142342 +
1690881218.3398812-CDS-C-linearis_contig9:1141837..11423421690881218.3398812-CDS-C-linearis_contig9:1141837..1142342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1141838..1142342 +
1622930727.4937065-CDS-C-linearis_contig9:1142494..11427011622930727.4937065-CDS-C-linearis_contig9:1142494..1142701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1142495..1142701 +
1690881218.3517416-CDS-C-linearis_contig9:1142494..11427011690881218.3517416-CDS-C-linearis_contig9:1142494..1142701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1142495..1142701 +
1622930727.516095-CDS-C-linearis_contig9:1142865..11430201622930727.516095-CDS-C-linearis_contig9:1142865..1143020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1142866..1143020 +
1690881218.3668933-CDS-C-linearis_contig9:1142865..11430201690881218.3668933-CDS-C-linearis_contig9:1142865..1143020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1142866..1143020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16532.1

>prot_C-linearis_contig9.16532.1 ID=prot_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
MVENDPVLKEEIKQKLWVSDEERVDAVHTENTRALAASLAALELNCKSNI
GRVAYNTVLAAAAGAGEHTCSPENPCDPAHRCPPAEPAGGVSLAQRAQSL
GVRPKTFREAHIRMRLTDHSIPPAQAVEEGRYCWGRRKTRSDATDPRVTE
LAGRYWHTDGISRASGDSGKKQMWRASKKEGEAYHSRRELMISGDKVFRK
FLEWPEFQALKAELLAEDSTFKDPGRTTFLSTRCGCLVEPKVSQCACQIH
TQQALYLESLRWLVGSVHIDCECTCDWCDGEGCRRWSSC
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mRNA from alignment at C-linearis_contig9:1140829..1143020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16532.1 ID=mRNA_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2192bp|location=Sequence derived from alignment at C-linearis_contig9:1140829..1143020+ (Chordaria linearis ClinC8C monoicous)
CATGGCGACGGACAAACATTATTTTGTGACTGTCAATTTTTTGCGTTTTC TTCCCCCTGTGGCGGGTTCCGAGGTCGAGTGCCCGTCGCCATAACTCTTG GAGTCAGACTCGTAGAAAAAAACTGAGACCGGTTCTGGGCTCTACAGGAC GGGAGGAAAACGGACAAAAAATATCAAAAAAAAAAAAAACGGTAAAGGGT ACAAATTGGACAAAAAGAGATGCGGCGGAATCAAGTTCGGCCACTTCCGC TTCGAACCACGACTTGATAACCTCGCCAATCGACTCCGCTTGGTCGAATT AGATACATAGGACACAACTTCCTCGGTCGCCCGACACAAACTCTAAGAGT CACGGCCCTGTCAACTCAGCCGGCTGGCGGCCATGCCGTCGCTGAAGCGC ACAATCTCAGTTTGCGGGAAAAATCGTGTCGTGAAACACACGTGGGGAAA GCACCCCCGCGGGTATATCTTGACCTCGGTGCTGCTGAAAGCGGGCTCCA CGCAGCCCGCTGGTAAGGGACGCACCACTGTAGTTGATGGTGATGAGTCG GGGGTGGAGGAGGCTGGAAGGAGCATGCTGATGCCCTCAAAAACCGAGCG GAACAACTAGCCAGCAGCAGGACATCACCAGCAGCAGCAGCAGCAGCGTC CACTCCCGCGAGAAGGAGGCTCGGCGCAGACGCAGCGCTCTCTCGGAGCT CGCCTCTGGCAACGGCGATCGTGGCCGGGTCGAAAAGGAATGGTCGGGGT AGTGAGGCAGAACGGGCACGAGTGCAAACGGTGAGTTCAAGTTTCAAGTG TAAAAACAGCACAAATAAAGCGTATGCTGCTGTATTGTAGGCGGGGTGTC ACTGGTGGGGTGTATCGCGCGGGTTACCGGCCATCTGACATGTACACACC GTTTGCACTCCGCACGACATCTGTCATGTTGGCATGCTTTCTCACTGTTC TACGAACAATATCGCTGCTGCAACAGGCGGAAGAAAAGCACCGCGCTGAG GTAGTAGAGATGGTGGAGAACGACCCAGTGTTGAAGGAGGAGATCAAGCA AAAGCTTTGGGTCTCAGACGAGGAGCGCGTAGATGCGGTCCATACGGAGA ATACTCGCGCGCTGGCTGCTTCTTTGGCGGCGTTGGAGCTGAACTGCAAG AGCAACATCGGCCGCGTCGCGTACAACACCGTGTTGGCGGCGGCAGCTGG AGCAGGGGAGCACACATGCTCCCCAGAGAATCCGTGTGACCCTGCTCACC GCTGTCCTCCCGCAGAGCCGGCCGGTGGTGTGAGCTTGGCCCAGCGAGCG CAGAGTCTTGGGGTGCGGCCCAAAACGTTTCGCGAGGCACACATCCGGAT GCGCCTCACCGACCACTCCATTCCACCGGCGCAGGCTGTGGAAGAGGGGC GCTACTGCTGGGGGAGACGGAAGACAAGGAGCGACGCGACGGACCCACGT GTGACGGAGTTGGCAGGCCGGTACTGGCACACGGATGGCATCTCGCGTGC GTCAGGAGATTCAGGTATGTAGTTGTGTGACAAGGTGACAACATTATCTT CTGCCGCTACTGCTCTCACTGCTCTCGTTGTACCATGCGACTGCTTTCAT AATCACAGCTTCATTGGCGCTGGTGATGTCTGTACCAACGATTCAACACA CCCCCCCCCAATCCAGGCAAAAAGCAGATGTGGAGAGCGTCCAAAAAGGA AGGCGAGGCGTACCACTCCCGCCGAGAACTCATGATCTCTGGCGACAAGG TGTTTCGTAAGTTTCTGGAGTGGCCGGAGTTCCAGGCGCTGAAGGCGGAG CTGCTGGCGGAAGATAGCACCTTCAAAGATCCTGGCCGGACAACTTTCTT GTCGACGCGGTGCGGGTGTTTAGGTGGGTCGATGAGAGAGTTGAATAAGT GCCAACATTATGGTAGAAGGTGGGGACAGCTGTTTCTACAAGTCTTGCTT CCGGATGCAAGGGGATGGAGTGCTGACTTTCATATTGCCCGCTGTCCGTT TTTCCGTCGGCTCTGCCGTGCACTTCTTACCCTGCAGTGGAGCCTAAGGT GTCGCAGTGTGCGTGCCAAATCCACACGCAGCAGGCCCTTTACCTCGAGT CCCTCAGATGGTTGGTGGGCTCCGTGCACATTGACTGCGAGTGCACGTGC GACTGGTGTGACGGGGAGGGCTGTAGGAGGTGGTCGAGTTGT
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Coding sequence (CDS) from alignment at C-linearis_contig9:1140829..1143020+

>mRNA_C-linearis_contig9.16532.1 ID=mRNA_C-linearis_contig9.16532.1|Name=mRNA_C-linearis_contig9.16532.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig9:1140829..1143020+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGAGAACGACCCAGTGTTGAAGGAGGAGATCAAGCAAAAGCTTTG
GGTCTCAGACGAGGAGCGCGTAGATGCGGTCCATACGGAGAATACTCGCG
CGCTGGCTGCTTCTTTGGCGGCGTTGGAGCTGAACTGCAAGAGCAACATC
GGCCGCGTCGCGTACAACACCGTGTTGGCGGCGGCAGCTGGAGCAGGGGA
GCACACATGCTCCCCAGAGAATCCGTGTGACCCTGCTCACCGCTGTCCTC
CCGCAGAGCCGGCCGGTGGTGTGAGCTTGGCCCAGCGAGCGCAGAGTCTT
GGGGTGCGGCCCAAAACGTTTCGCGAGGCACACATCCGGATGCGCCTCAC
CGACCACTCCATTCCACCGGCGCAGGCTGTGGAAGAGGGGCGCTACTGCT
GGGGGAGACGGAAGACAAGGAGCGACGCGACGGACCCACGTGTGACGGAG
TTGGCAGGCCGGTACTGGCACACGGATGGCATCTCGCGTGCGTCAGGAGA
TTCAGATGGTGGAGAACGACCCAGTGTTGAAGGAGGAGATCAAGCAAAAG
CTTTGGGTCTCAGACGAGGAGCGCGTAGATGCGGTCCATACGGAGAATAC
TCGCGCGCTGGCTGCTTCTTTGGCGGCGTTGGAGCTGAACTGCAAGAGCA
ACATCGGCCGCGTCGCGTACAACACCGTGTTGGCGGCGGCAGCTGGAGCA
GGGGAGCACACATGCTCCCCAGAGAATCCGTGTGACCCTGCTCACCGCTG
TCCTCCCGCAGAGCCGGCCGGTGGTGTGAGCTTGGCCCAGCGAGCGCAGA
GTCTTGGGGTGCGGCCCAAAACGTTTCGCGAGGCACACATCCGGATGCGC
CTCACCGACCACTCCATTCCACCGGCGCAGGCTGTGGAAGAGGGGCGCTA
CTGCTGGGGGAGACGGAAGACAAGGAGCGACGCGACGGACCCACGTGTGA
CGGAGTTGGCAGGCCGGTACTGGCACACGGATGGCATCTCGCGTGCGTCA
GGAGATTCAGGCAAAAAGCAGATGTGGAGAGCGTCCAAAAAGGAAGGCGA
GGCGTACCACTCCCGCCGAGAACTCATGATCTCTGGCGACAAGGTGTTTC
GTAAGTTTCTGGAGTGGCCGGAGTTCCAGGCGCTGAAGGCGGAGCTGCTG
GCGGAAGATAGCACCTTCAAAGATCCTGGCCGGACAACTTTCTTGTCGAC
GCGGTGCGGGTGTTTAGGCAAAAAGCAGATGTGGAGAGCGTCCAAAAAGG
AAGGCGAGGCGTACCACTCCCGCCGAGAACTCATGATCTCTGGCGACAAG
GTGTTTCGTAAGTTTCTGGAGTGGCCGGAGTTCCAGGCGCTGAAGGCGGA
GCTGCTGGCGGAAGATAGCACCTTCAAAGATCCTGGCCGGACAACTTTCT
TGTCGACGCGGTGCGGGTGTTTAGTGGAGCCTAAGGTGTCGCAGTGTGCG
TGCCAAATCCACACGCAGCAGGCCCTTTACCTCGAGTCCCTCAGATGGTT
GGTGGGCTCCGTGCACATTGACTGCGAGTGCACGTGCGACTGGTGTGACG
GGGAGGGCTGTAGGAGGTGGTCGAGTTGTTGGAGCCTAAGGTGTCGCAGT
GTGCGTGCCAAATCCACACGCAGCAGGCCCTTTACCTCGAGTCCCTCAGA
TGGTTGGTGGGCTCCGTGCACATTGACTGCGAGTGCACGTGCGACTGGTG
TGACGGGGAGGGCTGTAGGAGGTGGTCGAGTTGT
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