mRNA_C-linearis_contig9.16528.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16528.1
Unique NamemRNA_C-linearis_contig9.16528.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: D7FR55_ECTSI (Cilia- and flagella-associated protein 206 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR55_ECTSI)

HSP 1 Score: 1038 bits (2683), Expect = 0.000e+0
Identity = 540/663 (81.45%), Postives = 586/663 (88.39%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADG-GHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGKVRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAGE 2112
            MDEIQELVR +VRQCASRGVTVSEVLAAFVARTVIQKPG +GQALFSL+SPLT EG+ DL+DRSVDRLLEVDSPSLET+KMQVAVDSSYI EEE L+NS+QRR ARLREMQR IA MRPKDGADFDALTALHRQIF+YLLRHASDD R+GRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGV+IP+PEQEA +LL  MGR+LSDELEQAQQ CAELQQ+IVHSELRHP GVT DMLSRWKDELTN+RQYLSYLQSLQEDMAVSDRK+  LRDTI SEM  L+ELVGNRASVPKEHVYPKFYEIA+ W+ALYREYKV+SGRTRTT+VLR F  SYTP+IRGGMDIQ+GE++ALEENARAAEAAVG+ +  VEP GA + +  L    +  DAD  G  GD S  +  +     Q P+    ED+  E+PVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRY NRFFVFAH+VAI+TF++DPE FLK TLERAV SPELIHLLRLQDSFP+TCITRMLQGGK+ NGKVRPSLA  PPEKR+AGT TPVHF EKCID  YHWNEWVLRRRALQVANLRNC TKSQQT+ SHFRR NDTQVYL RAKHTQT+RNSGTKP +HVQYF GE
Sbjct:    1 MDEIQELVRKVVRQCASRGVTVSEVLAAFVARTVIQKPGLNGQALFSLNSPLTQEGLGDLIDRSVDRLLEVDSPSLETIKMQVAVDSSYITEEEGLMNSHQRRTARLREMQRTIATMRPKDGADFDALTALHRQIFSYLLRHASDDSRLGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVNIPHPEQEAATLLLDMGRVLSDELEQAQQTCAELQQIIVHSELRHPQGVTADMLSRWKDELTNKRQYLSYLQSLQEDMAVSDRKVGLLRDTIRSEMRDLEELVGNRASVPKEHVYPKFYEIATHWTALYREYKVISGRTRTTDVLRAFRDSYTPTIRGGMDIQSGELSALEENARAAEAAVGITSTNVEPTGATENKPPLGYTNEGKDADEEGRRGDTSDHIEEQPVPGGQEPAIVRREDQSIEQPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYKNRFFVFAHEVAISTFMSDPELFLKATLERAVASPELIHLLRLQDSFPETCITRMLQGGKNGNGKVRPSLALAPPEKREAGTDTPVHFIEKCIDPEYHWNEWVLRRRALQVANLRNCVTKSQQTDGSHFRRVNDTQVYLPRAKHTQTNRNSGTKPPRHVQYFGGE 663          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A6H5JGH8_9PHAE (Cilia- and flagella-associated protein 206 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH8_9PHAE)

HSP 1 Score: 782 bits (2020), Expect = 2.410e-277
Identity = 428/583 (73.41%), Postives = 468/583 (80.27%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQ-----------------------------------------------------IFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADG-GHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAV 1713
            MDEIQELVR +VRQCASRGVTVSEVLAAFVARTVIQKPG +GQALFSL+SPLT EG+SDL+DRSVDRLLEVDSPSLETMKMQVAVDSSYI+EEE L+NS+QRR ARLREMQR IA MRPKDGADFDALTALHRQ                                                     IF+YLLRHASDD RVGR VEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGG+++PNPEQEA +LL  MGR+LSDELEQAQQ CAELQQVIVHSELRHP GVT DMLSRWKDELTN+RQYLSYLQSLQEDMAVSDRK+S LRDTI SEM  L+ELVGNRASVPKEHVYPKFYEIA+ W+ALYREYKV+SGRTRTT+VLR F  SYTP+IRGG+DIQ+GE++ALEENARAAEAAVG+ +  VEP GA + +  L +  +  DAD  G  GD S  +  +     Q P+    ED+  E+PVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRY NRFFVFAHQVA+ATF+ DPE FLK TLER +
Sbjct:    1 MDEIQELVRQVVRQCASRGVTVSEVLAAFVARTVIQKPGLNGQALFSLNSPLTQEGLSDLIDRSVDRLLEVDSPSLETMKMQVAVDSSYISEEEGLMNSHQRRTARLREMQRTIATMRPKDGADFDALTALHRQVPLIPTYFYSFTVEMPIVDVNNRKHCVRSYPLSLRCTAAAHLGLGYARGMSMQIFSYLLRHASDDSRVGREVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGINVPNPEQEAATLLLDMGRVLSDELEQAQQTCAELQQVIVHSELRHPQGVTADMLSRWKDELTNKRQYLSYLQSLQEDMAVSDRKVSLLRDTIRSEMRDLEELVGNRASVPKEHVYPKFYEIATHWTALYREYKVISGRTRTTDVLRAFRDSYTPTIRGGLDIQSGELSALEENARAAEAAVGITSTNVEPTGATENKPPLGDTNEGKDADEEGRRGDTSDHIEEQPGPGGQGPAIVRREDQSTEQPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYKNRFFVFAHQVAMATFMTDPELFLKATLERFI 583          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A835YXN0_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN0_9STRA)

HSP 1 Score: 619 bits (1596), Expect = 5.850e-212
Identity = 354/670 (52.84%), Postives = 461/670 (68.81%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKP-GFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANE-------IVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQG-GKSANGKVRPSLATTPPE-KRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFA 2106
            M+EI +L+  IV+QCA+RG+ V EVLAA VARTVI+   G     LFSLD+PL+ EG++ L+D SV RLL  DSP +ET++MQVA D++Y+ EE++L     RR ARL+E+QR I  ++P+DGADF+ALT +HRQIF YLL+HA +     R VEREVAAALESVFPRISLKAFI L SEEKYAQL+ELA+IV GIR+FN+HIGKGG  +P+ + +A +LL  +   L  E+EQ Q  C   Q VIV   +  P G+T +++ RWKDEL NRRQYL+YLQS+QED+ +S+RK+ S+R+ +A E+S L++LV N+ASVPKEHVYPKF E+++QW AL+RE +V+  R     VLR + +SYT ++   MD+    V A  E    AE+    A E       +    G+++  +    + QQ+D        A    +     +E   ++A+   R  ++PV+LSIESTPEFMQLPLE+QGFC WTIV R+GLLLPG+PELGV R+ N  +VFAH+VA   F   PE  + G LERA+ SPELIHLLRLQDSFP+  I RML+G G  A+G      A  P   K DAGT TP+HFA+K ID  Y WNEW LRR+ALQ+ANLR CAT +QQT+ SHFRR N TQV+L R   TQT R+SG  P + V++ A
Sbjct:    1 MEEIDKLIAEIVQQCAARGIAVPEVLAALVARTVIETANGAHSMPLFSLDAPLSSEGINKLIDVSVARLLADDSPPMETLRMQVAFDTTYVREEKELEVKASRRAARLKELQRAIVQLKPRDGADFEALTTMHRQIFTYLLKHAHEGSEADRTVEREVAAALESVFPRISLKAFITLTSEEKYAQLEELASIVFGIRLFNKHIGKGGNRVPDADADAAALLAELSAELLVEVEQTQIACRRYQDVIVLMYMHQPQGLTIEVVDRWKDELANRRQYLAYLQSVQEDVIISERKVRSVRERLARELSDLRQLVENKASVPKEHVYPKFDEVSTQWRALFRELQVLRSREAAYAVLRKYKASYTSTLVESMDV----VRAAYEEQAPAESKDAPAIEAHSDSKSVGSGRGSSRGSNKPGSSAQQDDPRTAAVTAADVTPIAST--DEMIDTAAA---RAKDKPVRLSIESTPEFMQLPLEFQGFCPWTIVNRRGLLLPGRPELGVQRWRNAHYVFAHKVAAEAFQKSPEALVHGVLERAMQSPELIHLLRLQDSFPNVSIMRMLRGDGLLADGGA--GAAKGPAAVKCDAGTETPLHFADKNIDHSYSWNEWTLRRKALQIANLRKCATTAQQTDDSHFRRENTTQVWLPRLTGTQTMRSSGNNPPRQVRFTA 659          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: F0Y6B2_AURAN (Cilia- and flagella-associated protein 206 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6B2_AURAN)

HSP 1 Score: 498 bits (1283), Expect = 2.480e-160
Identity = 306/694 (44.09%), Postives = 391/694 (56.34%), Query Frame = 1
Query:  157 IVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLR----------------HASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYT--------------------PSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGKVRPSLATT-------PPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            I + CA RG  V  VLAAF+ART+++        LFS +  LT EGV  L+  S+ RL E D+PSLET+KMQVA DS+Y+  EE+L  S + R  + RE+ R I A++P+   DF+ LTAL+RQIF YLL                  A D   + R VERE+AAALESVFPRI LK+F+ L SEEK  QL+ELA IV GIR+FN+  GKGG  + + E    + +  +   L  E  +        Q+ +V+  LR P GV    L RW  EL NRRQY +YL SL ED A S R++   R+  A+EM  LQ LVG RASVPKEHVYPKF  IA+ W AL  E +VV  R  T E L  F  SY                     P   G +D +A E+          +AA  VA  + E A +A   +  D+AK  +D   G   +A                           PV+LS+E+TPEFMQLPLEYQGFC WT+  R GLLLPGKP LGV++Y    +VFAH VA+  F++ PE   +G + +A ++PEL+HLLRLQDS+P T I ++L           P  AT        P   RDA T TPVHF EK ID  Y WN+W LRRRAL++A L++CAT SQQT+ SHFRR N TQV+L +   TQ+ ++  T P   +QYF G
Sbjct:  345 ICQGCAGRGQRVPAVLAAFIARTILESDPL----LFSPEKELTSEGVDTLIRMSIARLCEKDAPSLETIKMQVAFDSTYVRFEEELDKSRKAREEKKRELVRAILAVKPRGSTDFETLTALYRQIFTYLLHVSRGGSGLPGAPSNTTAAEDPGSMERAVEREIAAALESVFPRIGLKSFVQLSSEEKRLQLEELARIVTGIRLFNREGGKGGAGLDHVEDAVATTVSDLRDALDAETAEQHDLALRYQETLVYCHLRQPPGVAPAQLERWAQELANRRQYGAYLTSLAEDAAASARRVQVHRERFATEMDELQALVGGRASVPKEHVYPKFDAIATAWFALDDELRVVESRVATLEELHQFRESYNMTCGANHPVYRAARLESHAKPDGGGAVDDEA-EMAEAVSKLGGDQAAAAVAAPV-EGAPSAASAAEDDDAKALDDLPTGARDNADV-------------------------PVRLSVETTPEFMQLPLEYQGFCGWTVANRHGLLLPGKPALGVVKYRGSCYVFAHAVALKAFMDAPEAVREGVVAQATLAPELVHLLRLQDSYPGTSIAKILASRAITGKGAEPGQATAVAKALLAPAATRDASTDTPVHFVEKHIDPAYEWNDWALRRRALRLAQLKHCATTSQQTDESHFRRNNTTQVFLPKIASTQSRKDGETNPPVRIQYFKG 1007          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A8J2WV84_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WV84_9STRA)

HSP 1 Score: 471 bits (1213), Expect = 3.710e-154
Identity = 283/687 (41.19%), Postives = 380/687 (55.31%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLL-------------RHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGKVRPSLA-------------TTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            M+EI ++V  I + CA +G  V +VLAAF+ART+++        LFS +  L+ EG+  L+   + R  + D P+LET+KMQV  DS+Y+  EE+L  S + R  + +++ R I  +RPK G DF+ LTAL+RQIF+YL                 +D   V R VERE+AAALESVFPRI LK+F+ LG+EEK  QL+ELA IV GIR+FN+  GKGG  + + E    + +  +   L  E+ +  + C   Q+ +V+  LR P   T + L RW  EL NRRQY +YL SL ED A S R++++ RD  ASEM  LQ +VG RA+VPKEHVYPKF  +A+ W AL  E +VV  R    E L  F  SY  ++        G  +A+   AR           I + A  + ++          D D    GD                            PV+LS+E+TPEFMQLPLEYQGFC WT   + GLLLPGKP LGV+RY    +VFA   A+  F  DPE   +G +  A   PEL+HLLRLQD +P T I ++L    S     R  +                PP  +DA   TP+HF EK +D  Y +NEW LRRRAL++A L+  AT S QT+AS +RR N +QV+L +   TQT + SGT+P   +QY  G
Sbjct:    1 MEEIDDIVTDIAQGCAGKGQRVPKVLAAFIARTILESD----PVLFSPEKELSNEGIETLVRMGIARCCQKDDPALETIKMQVTFDSTYVRYEEELAQSNEARANKTKDLIRSIIGVRPKGGTDFETLTALYRQIFSYLQFVSRGQGGLDGKGLSQADPAAVERAVERELAAALESVFPRIGLKSFVLLGAEEKRLQLEELARIVTGIRLFNREQGKGGAGLDHVEDAVATTVSDLREALDAEVAEQHEVCTRYQETLVYCHLRKPDEATAENLERWAQELANRRQYCAYLASLAEDAAASARRVAAQRDAFASEMDELQGMVGGRAAVPKEHVYPKFDAVAAAWFALDEELRVVESRVAVLEELHAFRESYAATL--------GPHSAVSRQARLE------GPPIQDEAAPSPDKPEXXXXXXXXDFDDLPQGDEGG-------------------------PVRLSVETTPEFMQLPLEYQGFCGWTCANKGGLLLPGKPGLGVVRYRGAHYVFASAEALRDFFKDPEGARQGVVAAATKRPELVHLLRLQDQYPGTSIAKILAAAASKRAASRGGVEGQRTAQGXXXXXXLAPPVMKDAACETPLHFVEKNMDPSYEFNEWALRRRALRLAALKKSATTSCQTDASSYRRDNASQVFLPKISSTQTRKESGTQPPLRIQYLQG 644          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A1V9Z5I6_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5I6_9STRA)

HSP 1 Score: 466 bits (1199), Expect = 4.770e-152
Identity = 278/666 (41.74%), Postives = 401/666 (60.21%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTD---MLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGK--VRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            MD I +++  ++ +C   GV VS+ LAAFV RT++Q    +   +FSL+  +   G++ L ++SVD LL+ DSPSLET+KMQ+  D  Y+  EE++  +   ++ ++  + R I A++P    DF+ LT L+RQIF  L+ HA+ D    R +EREVAAALESVFPRI LK+F+++  E+K  QL ELANIV GIR+FN+ IGKGG  I          ++S+ +L+S E+E+  Q C +  +V++H  + H +   T     + RW++EL N+RQ+LSY+QSL ED+ VS  K+  L  T  +E+++L+ LVG+R+S+PK  VYP F  ++  W  L  E++++  R+R+ + L  F  SYT ++              E   +A  A +    E  E +    +  +L  A      D G + + ++      +   +   S S        PV++S++STPEFMQLPLEYQG+C WTIV+R GLLLPG P LGVI+Y N + VF ++ A+  F+ +P+ ++       V  PELI+LLRLQ+SFP+T +  ++   K  N K  V P LA     K DA T TPVHF EK ID  Y WNEW LRRRAL+VANLRNC T S QT  S+FR  N+TQV+L +   TQT  + GT P + V YFAG
Sbjct:    1 MDRIGKVIGDVIARCKYEGVVVSDTLAAFVCRTIVQ----ENTNVFSLEGEIDAAGITQLTEKSVDMLLQKDSPSLETIKMQLDFDLCYVKYEEEVEKAQTLKDKKVTNLHRSIVALQPSGTGDFETLTTLYRQIFTLLMVHANADKANDRNIEREVAAALESVFPRIGLKSFVSMSPEDKKFQLKELANIVGGIRLFNREIGKGGAGITLSLDTIRENVKSISQLVSQEVEEVNQTCTDYTEVLLH--IHHYNVQVTGGPVNVKRWQEELNNKRQFLSYMQSLHEDIDVSSEKIQRLIATFENELNTLKSLVGSRSSLPKGQVYPVFEALSKAWEELGLEHQLLLARSRSIKALMEFKDSYTRTL----------AQQSEWILKAKRAGMPPQEEWFEHSEPDNQIFALSTATNAIQKDSGEATEGNFYKAANNNLYVEGTVSESG-------PVRMSVDSTPEFMQLPLEYQGYCPWTIVQRGGLLLPGDPSLGVIQYHNAYHVFVNEHALNDFMANPDKYIAAVHAYVVHKPELIYLLRLQESFPETSMASLM---KLLNNKTQVHPLLAPHAVLKVDASTSTPVHFVEKNIDVNYEWNEWSLRRRALRVANLRNCKTVSAQTTLSNFRANNETQVWLPQDNTTQTGHDKGTNPTKTVTYFAG 640          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A485LQG7_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQG7_9STRA)

HSP 1 Score: 458 bits (1178), Expect = 3.830e-149
Identity = 273/669 (40.81%), Postives = 396/669 (59.19%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIP---NPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPH---GVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGK--VRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            MD I ++V  I+ +C   GV VS+ LAAF+ RT +Q    +    F LD  +  +GV+ L  RSV  LL+ DSPSLET+KMQ+  D  Y+  EE++      +  ++  + R I  ++P    DF+ LT L+RQIF  L+ HA  +    R +EREVAAALESVFPRI LK+F+++  ++K  QL ELA+IV GIR+FN+ IGKGG  I     P       + S+ +L S+E+E+A Q C E  +V++H  + H +    VT + + RW++EL N+RQ+LSYLQSL ED+ VS  K+S L  +  +E+++L+ LVG+R S+PK  VYP F  +A  W  L  E++++  R+R+ + L  F  S+T ++              E   +A  A +    +  E + +  +  +   A  +++A  G + D++   V                      PV++S++STPEFMQLPLEYQG+C WTIV+R GLLLPG P LGVI+Y N + VF ++ A+  F+ +P+ ++    +  V  PELI+LLRLQ+SFPDT +  ++   K  N +  V P LA    +K DAGT TP+HF EK +D  Y WNEW LRRRA+++ANLRN  T S QT  S+FR+  D QV+L     TQT  + GT P + + YFAG
Sbjct:    1 MDRISKIVADIIARCKYEGVEVSDTLAAFICRTAVQ----EDSNRFCLDGDVDSDGVAALTQRSVTSLLQKDSPSLETIKMQLDFDLCYVKHEEEVEKFRAAKAKKISNLHRSIVLLQPSGTGDFETLTTLYRQIFTLLMVHADAEKSGDRNIEREVAAALESVFPRIGLKSFVSMAPDDKKFQLKELASIVGGIRLFNKEIGKGGAGISLSLGPSHTIRDNVTSVSKLASEEVEEANQVCTEYTEVLLH--IHHYNVKDNVTAERVKRWQEELNNKRQFLSYLQSLYEDIDVSTEKISRLTSSFDNELNTLKALVGSRTSLPKGQVYPVFEALAKAWDELEAEHQLLLARSRSIKSLMEFKDSFTRTLS----------PQSEWILKAKRAGMPPQEDWFEHSESENQPKNALGAVTRHEAKEGTADDSNGNDV----------------------PVRMSVDSTPEFMQLPLEYQGYCPWTIVQRGGLLLPGDPSLGVIQYKNAYHVFVNERALDEFMANPQLYVSAVHDFVVRKPELIYLLRLQESFPDTSMASLM---KMTNNRTHVHPLLAPNAVQKVDAGTSTPIHFVEKNLDVNYEWNEWSLRRRAIKIANLRNYKTVSAQTTLSNFRKDVDQQVWLPTDNTTQTGHDKGTNPTKTITYFAG 628          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A067BWK6_SAPPC (Cilia- and flagella-associated protein 206 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BWK6_SAPPC)

HSP 1 Score: 454 bits (1168), Expect = 1.890e-147
Identity = 281/669 (42.00%), Postives = 395/669 (59.04%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVTTD---MLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVE---PAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGK--VRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            +D I ++V  I+ +C   GV VS+ LAAF+ RT++Q    +   +F LD  +   G+++L  RSVD LL  DSPSLET+KMQ+  D  Y+  EED+  +   +  ++  + + I A++P   +DF+ALT L+RQIF  L+ HA  D    R +EREVAAALESVFPRI LK+F+++  ++K  QL ELANIV GIR+FN+ IGKGG  I          + S+ + ++ E+++  Q C +  +V++H  + H +  +      L RW++EL N+RQ+LSY+QSL ED+ VS  K+  L  +  +E+ +L+ LVG+R S+PK  VYP F  ++  W  L  E++++  R+R+ + L  F  SYT ++        G+ +  E   +A  A +    E  E   P   A   SS   A  ++ A   H GDAS  V                       P+++S++STPEFMQLPLEYQG+C WTIV+R GLLLPG P LGVI+Y N + VF ++ A++ F+  P+ ++       V  PELI+LLRLQ+SFPDT +  ++   K  N K  V P LA     K DA T TPVHF EK ID+ Y WNEW LRRRAL+VANLRNC T S QT  S+FR   D QV+L     TQT  + GT P + V YFAG
Sbjct:    2 LDRIGKVVADIIARCKYEGVLVSDTLAAFICRTIVQ----EDSNVFCLDGDIDAAGLAELTKRSVDMLLRKDSPSLETIKMQLDFDLCYVKHEEDVEKAAAMKEKKIANLHKSIVALQPSGTSDFEALTTLYRQIFTMLMVHADADKANDRTIEREVAAALESVFPRIGLKSFVSMSPDDKKFQLKELANIVGGIRLFNKEIGKGGAGIVLSIDTIRDNVASISKSVALEVDEVNQICTDYTEVLLH--IHHYNAQSASGVANLKRWQEELNNKRQFLSYMQSLHEDIDVSSDKIGRLVTSFETELHTLKSLVGSRTSLPKGQVYPIFEALSKAWDELEVEHQLLLARSRSIKALMEFKDSYTRTL--------GQQS--EWILKAKRAGMPPQEEWFEHSEPDNQAYLVSSASTASHKDSAATAH-GDASAAV--------------------DNVPIRMSVDSTPEFMQLPLEYQGYCPWTIVQRGGLLLPGDPSLGVIQYHNAYHVFVNERALSDFMASPDTYISAVHAFVVHRPELIYLLRLQESFPDTSMASLM---KLLNNKAHVHPLLAPHAVLKVDASTSTPVHFVEKNIDSTYDWNEWSLRRRALRVANLRNCKTTSAQTTLSNFRSDVDAQVWLPAENATQTGTDRGTNPTKTVTYFAG 630          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A1V9Z275_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z275_9STRA)

HSP 1 Score: 451 bits (1161), Expect = 1.340e-146
Identity = 275/676 (40.68%), Postives = 389/676 (57.54%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIP-NPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHPHGVT-TDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSI-----------RGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQGGKSANGK--VRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAG 2109
            +D I ++V  I+ +C   GV VS+ LAAF+ RT++Q    +   +F LD  +   G+++L  RSVD LL  DSPSLET+KMQ+  D  Y    E++  +   ++ ++  + R I A++P   +DF+ LT L+RQIF  L+ HA  D    R +EREVAAALESVFPRI LK+F+++  ++K  QL ELANIV GIR+FN+ IGKGG  I  +        + S+ + +  E+E A Q C +  +V++H    +    +    L RW++EL N+RQ+LSY+QSL ED+ VS  K+  L  T  +E+S+L+ LVG+R S+PK  VYP F  +A  W  L  E++++  R+R+ + L  F  SYT ++           R GM  Q       E + +A          ++  + A+  R   D A   + A                               P + P+++S++STPEFMQLPLEYQG+C WTIV+R GLLLPG P LGVI+Y N + VF ++ A+  F+  P+ ++       V  PELI+LLRLQ+SFPDT +  ++   K  N K  V P LA     K DA T TPVHF +K ID  Y WNEW LRRRAL+VANLRNC T S QT  S+FR+  D+QV+L +   +QT  + GT P + V YFAG
Sbjct:    2 LDRIGKVVGDIIARCKYEGVVVSDTLAAFICRTIVQ----ENTNVFCLDGDIDAAGINELTQRSVDMLLRKDSPSLETIKMQLDFDLCY----EEVEKAQAMKDKKIANLHRSIVALQPSGTSDFETLTTLYRQIFTLLMVHADADKANDRNIEREVAAALESVFPRIGLKSFVSMSPDDKKFQLKELANIVGGIRLFNREIGKGGAGITLSLADTIRDNVTSIAKSVDQEVEDANQTCTDYTEVLLHVHHYNAQSASGASALKRWQEELNNKRQFLSYMQSLHEDIDVSSDKIQRLITTFETELSTLKSLVGSRTSLPKGQVYPIFEALAKAWDELDVEHQLLLARSRSIKALMEFKDSYTRTLGPQSEWILKAKRAGMPPQEEWFEHSEPDNQA----------LLTSSSASTGRKDSDAAAHDDGA------------------------------APDDVPIRMSVDSTPEFMQLPLEYQGYCPWTIVQRGGLLLPGDPSLGVIQYRNAYHVFVNERALGDFMASPDKYINAVHSFVVHRPELIYLLRLQESFPDTSMASLM---KLLNNKTHVHPLLAPHAVLKVDASTSTPVHFVDKNIDVNYDWNEWSLRRRALKVANLRNCKTVSVQTTLSNFRKDVDSQVWLPQNNASQTGHDKGTNPTKTVTYFAG 626          
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Match: A0A6G0W5D4_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5D4_9STRA)

HSP 1 Score: 452 bits (1162), Expect = 3.860e-146
Identity = 277/686 (40.38%), Postives = 396/686 (57.73%), Query Frame = 1
Query:  127 MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDSPLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSYQRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVGRGVEREVAAALESVFPRIS-------------------LKAFINLGSEEKYAQLDELANIVLGIRVFNQHIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSELRHP-HGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIASEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTEVLRTFCSSYTPSIRGGMD--IQAGEVTALEENARAAEAAVGVANEIVEPAGAAKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGERPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNRFFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCITRMLQ--GGKSANGKVRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWVLRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGTKPHQHVQYFAGE 2112
            MD +Q++V  IV +C   GV VS+ LAAFV RTV+     +    F LD  +  +G++DL  RSV  LL+ DSP+LET+KMQ+  D  Y+  EE++      +  ++  + R IA ++P   +DFD LT L+RQIF  L+ HA  +    R +EREVAAALESVFPRI                    LK+F+ +  ++K  QL ELA+IV GIR+FN+ IGKGG  I          +  + RL S+E+E+A Q C E  +V++H  + H  H V  + + RW++EL N+RQ+LSYLQSL ED+ VS  K+  L  T  +E+S+L+ LVG R S+PK  VYP F  ++  W  L  E++++  R+R+ + L  F  S+T ++    +  +QA       ++   A+       + +E A  +K  ++   +      D  H  D                    +E R  + PV++S+ESTPEFMQLPLEYQG+C WTIV+R GLLLPG P LGVI++ N + VF ++ A+  F+ +P ++++   +  V  PELI+LLRLQ+SFPDT +  +++     +    V P LA    EK DA T TPVHF EK +D  Y WNEW LRRRA+Q+ANLRN  T S QT  S+FR+  D QV+L     TQT  + GT P + + YFAG+
Sbjct:    1 MDRMQKIVADIVARCKYEGVDVSDTLAAFVCRTVVH----EDTNRFCLDGDVDADGIADLTARSVTVLLQKDSPALETIKMQLDFDLCYVKHEEEVDKVRAVKAKKIANLHRSIALLQPNGTSDFDTLTTLYRQIFTLLMVHADAEKSNDRNIEREVAAALESVFPRIGWVFFLPRSRLSYVARALCRLKSFVTMSGDDKKLQLKELASIVGGIRLFNREIGKGGAGITLTLDTIHDHVAQVTRLASEEMEEASQVCTEYTEVLLH--MHHAKHNVPRERIDRWQEELNNKRQFLSYLQSLYEDIDVSTEKIRRLIATFDTELSALKALVGARTSLPKGQVYPAFEALSKAWDELDNEHQLLLARSRSIKALMQFKDSFTRTLSPQSEWILQAKRTGMPPQDEWFADN-----QQSLEMAAPSKPPTATSSSSHGTHHDAKHQDD--------------------NESRHDDVPVRMSVESTPEFMQLPLEYQGYCPWTIVQRGGLLLPGDPSLGVIQFRNAYHVFVNERALDAFMANPAWYVESVHDFVVRKPELIYLLRLQESFPDTSMASLMRWTSNPAHRAHVHPLLAPHAVEKVDASTATPVHFVEKNLDVNYEWNEWSLRRRAVQIANLRNYKTVSVQTTLSNFRKDVDQQVWLPADHATQTGHDKGTNPTKTIAYFAGK 655          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR55_ECTSI0.000e+081.45Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A6H5JGH8_9PHAE2.410e-27773.41Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A835YXN0_9STRA5.850e-21252.84Cilia- and flagella-associated protein 206 n=1 Tax... [more]
F0Y6B2_AURAN2.480e-16044.09Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A8J2WV84_9STRA3.710e-15441.19Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A1V9Z5I6_9STRA4.770e-15241.74Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A485LQG7_9STRA3.830e-14940.81Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A067BWK6_SAPPC1.890e-14742.00Cilia- and flagella-associated protein 206 n=2 Tax... [more]
A0A1V9Z275_9STRA1.340e-14640.68Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A6G0W5D4_9STRA3.860e-14640.38Cilia- and flagella-associated protein 206 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1114451..1117012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1045.8
Seed ortholog evalue8.5e-303
Seed eggNOG ortholog2880.D7FR55
Preferred nameCFAP206
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001534,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0032991,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs2CN2C@1,2QTGJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2112
Cds size1986
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16528.1prot_C-linearis_contig9.16528.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1114577..1117012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930726.4951088-UTR-C-linearis_contig9:1114450..11145761622930726.4951088-UTR-C-linearis_contig9:1114450..1114576Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1114451..1114576 +
1690881217.8596275-UTR-C-linearis_contig9:1114450..11145761690881217.8596275-UTR-C-linearis_contig9:1114450..1114576Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1114451..1114576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930726.5193162-CDS-C-linearis_contig9:1114576..11146751622930726.5193162-CDS-C-linearis_contig9:1114576..1114675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1114577..1114675 +
1690881217.8720796-CDS-C-linearis_contig9:1114576..11146751690881217.8720796-CDS-C-linearis_contig9:1114576..1114675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1114577..1114675 +
1622930726.5317721-CDS-C-linearis_contig9:1114853..11151561622930726.5317721-CDS-C-linearis_contig9:1114853..1115156Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1114854..1115156 +
1690881217.8819537-CDS-C-linearis_contig9:1114853..11151561690881217.8819537-CDS-C-linearis_contig9:1114853..1115156Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1114854..1115156 +
1622930726.5462162-CDS-C-linearis_contig9:1115428..11170121622930726.5462162-CDS-C-linearis_contig9:1115428..1117012Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1115429..1117012 +
1690881217.8932538-CDS-C-linearis_contig9:1115428..11170121690881217.8932538-CDS-C-linearis_contig9:1115428..1117012Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1115429..1117012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16528.1

>prot_C-linearis_contig9.16528.1 ID=prot_C-linearis_contig9.16528.1|Name=mRNA_C-linearis_contig9.16528.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=662bp
MDEIQELVRTIVRQCASRGVTVSEVLAAFVARTVIQKPGFDGQALFSLDS
PLTPEGVSDLLDRSVDRLLEVDSPSLETMKMQVAVDSSYIAEEEDLVNSY
QRRNARLREMQRIIAAMRPKDGADFDALTALHRQIFAYLLRHASDDLRVG
RGVEREVAAALESVFPRISLKAFINLGSEEKYAQLDELANIVLGIRVFNQ
HIGKGGVSIPNPEQEATSLLQSMGRLLSDELEQAQQCCAELQQVIVHSEL
RHPHGVTTDMLSRWKDELTNRRQYLSYLQSLQEDMAVSDRKLSSLRDTIA
SEMSSLQELVGNRASVPKEHVYPKFYEIASQWSALYREYKVVSGRTRTTE
VLRTFCSSYTPSIRGGMDIQAGEVTALEENARAAEAAVGVANEIVEPAGA
AKERSSLDEAKQQNDADGGHSGDASYRVVGEEHQEEQHPSSASSEDRPGE
RPVKLSIESTPEFMQLPLEYQGFCSWTIVKRQGLLLPGKPELGVIRYMNR
FFVFAHQVAIATFINDPEYFLKGTLERAVVSPELIHLLRLQDSFPDTCIT
RMLQGGKSANGKVRPSLATTPPEKRDAGTHTPVHFAEKCIDTGYHWNEWV
LRRRALQVANLRNCATKSQQTEASHFRRANDTQVYLQRAKHTQTSRNSGT
KPHQHVQYFAGE
back to top

mRNA from alignment at C-linearis_contig9:1114451..1117012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16528.1 ID=mRNA_C-linearis_contig9.16528.1|Name=mRNA_C-linearis_contig9.16528.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2562bp|location=Sequence derived from alignment at C-linearis_contig9:1114451..1117012+ (Chordaria linearis ClinC8C monoicous)
CCGCACGTTGCGAGTCTTTTAAATCTATCGTAGCAGCACCGTTGCGCTTC TAGCGTTTGTCCCTAGAAGTGCGCTGCTTCTCCCACGTCTGGCAGTAGTC TTGGACTCGTTTATCACTTTTCAACAATGGATGAAATTCAGGAACTTGTA CGTACAATTGTGCGGCAGTGTGCTTCGCGAGGAGTCACAGTGTCCGAGGT GCTGGCGGCATTCGTTGCCAGGACGGTGAGTGAGGGCATGAAAGGGCAAC CAAGCTCAGGTACACATGTAAAAGAACCTGAACGTAAGACTAGATTGCAC GCTTGGTTACCATTAGTTTAACTAATACCACGTAAATGGCTATCCAGATG GGATCTCTCGCTGTGCAAGGTGACCATGCTTTCCAATCGCCATGTTCGCA CAGGTGATCCAGAAACCAGGATTTGATGGACAAGCCCTCTTCAGCTTAGA CAGCCCGTTGACCCCAGAAGGCGTGAGTGATTTACTGGACCGGAGTGTTG ACCGGTTGCTCGAAGTAGACTCCCCTTCGCTGGAAACGATGAAGATGCAG GTTGCTGTCGACTCCAGCTACATCGCCGAGGAAGAGGACCTCGTCAACTC ATACCAACGGCGCAATGCACGATTGAGAGAGATGCAACGGATTATCGCGG CAATGAGACCCAAGGACGGAGCTGATTTCGACGCGCTGACCGCTCTTCAT CGCCAGGTAGGTGCACCATCATTCGATGATCGTGCACGTGCATAGTCTCC GTACATACGCTACAAGACTCTTTGACTATCATCAGATACATCGTTCAAAT AGTCTATAGCCTCGTTTTTCTACTCCTTGATCGTCCCTGAATTGCTTGGA ATATTCCCGAGGTAATGATTGCACGTGCGATCCTACATCAATGTACATAA ATCTCGCTGCGTGGTATCAGCAACCAACCGTTCTTCTCTGTTGCGCGTAT TCTGCCTTCTTGCTGTGCGCCCTGAAAGATATTTGCCTACCTTCTCCGTC ACGCGAGCGACGATTTAAGAGTGGGGCGAGGAGTGGAGCGTGAAGTCGCG GCTGCACTCGAAAGTGTTTTCCCGCGAATAAGCCTAAAAGCCTTCATCAA CCTGGGCAGTGAAGAGAAATACGCCCAACTTGATGAACTAGCAAACATTG TCCTCGGAATTCGGGTGTTTAACCAACACATTGGCAAAGGTGGGGTCAGC ATTCCAAACCCCGAGCAAGAAGCTACATCACTACTACAAAGTATGGGGAG GCTCTTATCAGATGAACTTGAACAAGCACAGCAGTGTTGTGCAGAACTTC AGCAGGTCATCGTCCACAGCGAGTTGCGTCATCCTCATGGAGTCACGACG GATATGCTTAGCCGCTGGAAGGACGAGTTGACCAACCGGCGACAATACTT GTCGTATTTGCAGAGCTTGCAAGAAGACATGGCGGTATCTGACCGCAAGC TTAGCTCGCTTCGTGACACCATCGCGTCCGAAATGAGCAGCTTGCAGGAG CTGGTGGGGAATCGCGCATCCGTTCCTAAGGAACACGTTTACCCAAAATT TTATGAAATCGCTTCTCAATGGAGTGCGTTGTACCGGGAGTACAAGGTGG TATCCGGCCGGACTAGAACAACGGAGGTACTCCGGACGTTTTGTTCATCA TACACTCCTTCAATTCGTGGAGGAATGGACATACAAGCGGGTGAGGTTAC GGCTTTGGAAGAGAACGCTCGGGCAGCAGAGGCGGCCGTTGGGGTGGCCA ACGAAATCGTGGAACCGGCAGGTGCGGCAAAAGAGAGATCGTCACTAGAC GAAGCGAAGCAGCAAAACGATGCTGATGGCGGCCATAGCGGTGACGCAAG CTATAGAGTGGTAGGAGAAGAACATCAAGAAGAACAACACCCCTCTAGCG CCAGTTCTGAGGACCGGCCCGGTGAAAGACCCGTGAAGCTATCTATTGAA TCAACTCCGGAATTTATGCAGCTACCTTTGGAGTATCAAGGTTTTTGCTC GTGGACCATCGTGAAGAGGCAAGGGTTGCTTCTTCCCGGCAAGCCCGAGC TGGGAGTGATTCGATACATGAACCGTTTCTTCGTGTTTGCGCACCAAGTG GCGATCGCCACATTCATAAACGATCCGGAGTATTTCTTAAAGGGTACTCT CGAGCGGGCTGTGGTCTCTCCGGAACTGATCCACCTACTTCGCCTGCAAG ACTCGTTCCCAGACACGTGCATTACTCGCATGTTACAAGGGGGCAAGTCC GCAAATGGCAAGGTTCGTCCGAGTCTTGCCACGACTCCCCCGGAAAAGCG CGACGCTGGCACACACACACCGGTGCACTTCGCGGAGAAATGCATCGACA CAGGGTACCACTGGAACGAATGGGTTCTTCGGCGTCGGGCTCTCCAGGTG GCAAATTTGCGCAACTGCGCGACCAAATCTCAACAGACAGAAGCCTCCCA CTTCCGGAGGGCAAACGACACTCAAGTGTATCTTCAGCGAGCCAAGCACA CACAAACTAGCAGGAACAGCGGGACAAAGCCGCATCAGCATGTACAATAC TTTGCAGGTGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1114451..1117012+

>mRNA_C-linearis_contig9.16528.1 ID=mRNA_C-linearis_contig9.16528.1|Name=mRNA_C-linearis_contig9.16528.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3972bp|location=Sequence derived from alignment at C-linearis_contig9:1114451..1117012+ (Chordaria linearis ClinC8C monoicous)
ATGGATGAAATTCAGGAACTTGTACGTACAATTGTGCGGCAGTGTGCTTC
GCGAGGAGTCACAGTGTCCGAGGTGCTGGCGGCATTCGTTGCCAGGACGA
TGGATGAAATTCAGGAACTTGTACGTACAATTGTGCGGCAGTGTGCTTCG
CGAGGAGTCACAGTGTCCGAGGTGCTGGCGGCATTCGTTGCCAGGACGGT
GATCCAGAAACCAGGATTTGATGGACAAGCCCTCTTCAGCTTAGACAGCC
CGTTGACCCCAGAAGGCGTGAGTGATTTACTGGACCGGAGTGTTGACCGG
TTGCTCGAAGTAGACTCCCCTTCGCTGGAAACGATGAAGATGCAGGTTGC
TGTCGACTCCAGCTACATCGCCGAGGAAGAGGACCTCGTCAACTCATACC
AACGGCGCAATGCACGATTGAGAGAGATGCAACGGATTATCGCGGCAATG
AGACCCAAGGACGGAGCTGATTTCGACGCGCTGACCGCTCTTCATCGCCA
GGTGATCCAGAAACCAGGATTTGATGGACAAGCCCTCTTCAGCTTAGACA
GCCCGTTGACCCCAGAAGGCGTGAGTGATTTACTGGACCGGAGTGTTGAC
CGGTTGCTCGAAGTAGACTCCCCTTCGCTGGAAACGATGAAGATGCAGGT
TGCTGTCGACTCCAGCTACATCGCCGAGGAAGAGGACCTCGTCAACTCAT
ACCAACGGCGCAATGCACGATTGAGAGAGATGCAACGGATTATCGCGGCA
ATGAGACCCAAGGACGGAGCTGATTTCGACGCGCTGACCGCTCTTCATCG
CCAGATATTTGCCTACCTTCTCCGTCACGCGAGCGACGATTTAAGAGTGG
GGCGAGGAGTGGAGCGTGAAGTCGCGGCTGCACTCGAAAGTGTTTTCCCG
CGAATAAGCCTAAAAGCCTTCATCAACCTGGGCAGTGAAGAGAAATACGC
CCAACTTGATGAACTAGCAAACATTGTCCTCGGAATTCGGGTGTTTAACC
AACACATTGGCAAAGGTGGGGTCAGCATTCCAAACCCCGAGCAAGAAGCT
ACATCACTACTACAAAGTATGGGGAGGCTCTTATCAGATGAACTTGAACA
AGCACAGCAGTGTTGTGCAGAACTTCAGCAGGTCATCGTCCACAGCGAGT
TGCGTCATCCTCATGGAGTCACGACGGATATGCTTAGCCGCTGGAAGGAC
GAGTTGACCAACCGGCGACAATACTTGTCGTATTTGCAGAGCTTGCAAGA
AGACATGGCGGTATCTGACCGCAAGCTTAGCTCGCTTCGTGACACCATCG
CGTCCGAAATGAGCAGCTTGCAGGAGCTGGTGGGGAATCGCGCATCCGTT
CCTAAGGAACACGTTTACCCAAAATTTTATGAAATCGCTTCTCAATGGAG
TGCGTTGTACCGGGAGTACAAGGTGGTATCCGGCCGGACTAGAACAACGG
AGGTACTCCGGACGTTTTGTTCATCATACACTCCTTCAATTCGTGGAGGA
ATGGACATACAAGCGGGTGAGGTTACGGCTTTGGAAGAGAACGCTCGGGC
AGCAGAGGCGGCCGTTGGGGTGGCCAACGAAATCGTGGAACCGGCAGGTG
CGGCAAAAGAGAGATCGTCACTAGACGAAGCGAAGCAGCAAAACGATGCT
GATGGCGGCCATAGCGGTGACGCAAGCTATAGAGTGGTAGGAGAAGAACA
TCAAGAAGAACAACACCCCTCTAGCGCCAGTTCTGAGGACCGGCCCGGTG
AAAGACCCGTGAAGCTATCTATTGAATCAACTCCGGAATTTATGCAGCTA
CCTTTGGAGTATCAAGGTTTTTGCTCGTGGACCATCGTGAAGAGGCAAGG
GTTGCTTCTTCCCGGCAAGCCCGAGCTGGGAGTGATTCGATACATGAACC
GTTTCTTCGTGTTTGCGCACCAAGTGGCGATCGCCACATTCATAAACGAT
CCGGAGTATTTCTTAAAGGGTACTCTCGAGCGGGCTGTGGTCTCTCCGGA
ACTGATCCACCTACTTCGCCTGCAAGACTCGTTCCCAGACACGTGCATTA
CTCGCATGTTACAAGGGGGCAAGTCCGCAAATGGCAAGGTTCGTCCGAGT
CTTGCCACGACTCCCCCGGAAAAGCGCGACGCTGGCACACACACACCGGT
GCACTTCGCGGAGAAATGCATCGACACAGGGTACCACTGGAACGAATGGG
TTCTTCGGCGTCGGGCTCTCCAGGTGGCAAATTTGCGCAACTGCGCGACC
AAATCTCAACAGACAGAAGCCTCCCACTTCCGGAGGGCAAACGACACTCA
AGTGTATCTTCAGCGAGCCAAGCACACACAAACTAGCAGGAACAGCGGGA
CAAAGCCGCATCAGCATGTACAATACTTTGCAGGTGAGATATTTGCCTAC
CTTCTCCGTCACGCGAGCGACGATTTAAGAGTGGGGCGAGGAGTGGAGCG
TGAAGTCGCGGCTGCACTCGAAAGTGTTTTCCCGCGAATAAGCCTAAAAG
CCTTCATCAACCTGGGCAGTGAAGAGAAATACGCCCAACTTGATGAACTA
GCAAACATTGTCCTCGGAATTCGGGTGTTTAACCAACACATTGGCAAAGG
TGGGGTCAGCATTCCAAACCCCGAGCAAGAAGCTACATCACTACTACAAA
GTATGGGGAGGCTCTTATCAGATGAACTTGAACAAGCACAGCAGTGTTGT
GCAGAACTTCAGCAGGTCATCGTCCACAGCGAGTTGCGTCATCCTCATGG
AGTCACGACGGATATGCTTAGCCGCTGGAAGGACGAGTTGACCAACCGGC
GACAATACTTGTCGTATTTGCAGAGCTTGCAAGAAGACATGGCGGTATCT
GACCGCAAGCTTAGCTCGCTTCGTGACACCATCGCGTCCGAAATGAGCAG
CTTGCAGGAGCTGGTGGGGAATCGCGCATCCGTTCCTAAGGAACACGTTT
ACCCAAAATTTTATGAAATCGCTTCTCAATGGAGTGCGTTGTACCGGGAG
TACAAGGTGGTATCCGGCCGGACTAGAACAACGGAGGTACTCCGGACGTT
TTGTTCATCATACACTCCTTCAATTCGTGGAGGAATGGACATACAAGCGG
GTGAGGTTACGGCTTTGGAAGAGAACGCTCGGGCAGCAGAGGCGGCCGTT
GGGGTGGCCAACGAAATCGTGGAACCGGCAGGTGCGGCAAAAGAGAGATC
GTCACTAGACGAAGCGAAGCAGCAAAACGATGCTGATGGCGGCCATAGCG
GTGACGCAAGCTATAGAGTGGTAGGAGAAGAACATCAAGAAGAACAACAC
CCCTCTAGCGCCAGTTCTGAGGACCGGCCCGGTGAAAGACCCGTGAAGCT
ATCTATTGAATCAACTCCGGAATTTATGCAGCTACCTTTGGAGTATCAAG
GTTTTTGCTCGTGGACCATCGTGAAGAGGCAAGGGTTGCTTCTTCCCGGC
AAGCCCGAGCTGGGAGTGATTCGATACATGAACCGTTTCTTCGTGTTTGC
GCACCAAGTGGCGATCGCCACATTCATAAACGATCCGGAGTATTTCTTAA
AGGGTACTCTCGAGCGGGCTGTGGTCTCTCCGGAACTGATCCACCTACTT
CGCCTGCAAGACTCGTTCCCAGACACGTGCATTACTCGCATGTTACAAGG
GGGCAAGTCCGCAAATGGCAAGGTTCGTCCGAGTCTTGCCACGACTCCCC
CGGAAAAGCGCGACGCTGGCACACACACACCGGTGCACTTCGCGGAGAAA
TGCATCGACACAGGGTACCACTGGAACGAATGGGTTCTTCGGCGTCGGGC
TCTCCAGGTGGCAAATTTGCGCAACTGCGCGACCAAATCTCAACAGACAG
AAGCCTCCCACTTCCGGAGGGCAAACGACACTCAAGTGTATCTTCAGCGA
GCCAAGCACACACAAACTAGCAGGAACAGCGGGACAAAGCCGCATCAGCA
TGTACAATACTTTGCAGGTGAG
back to top