mRNA_C-linearis_contig9.16471.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: D7G2X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X3_ECTSI) HSP 1 Score: 457 bits (1176), Expect = 5.050e-159 Identity = 220/246 (89.43%), Postives = 236/246 (95.93%), Query Frame = 3
Query: 210 LETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDKVRLLLASCL 947
LETSTTSDEYELLRG++VK AS G+E+DLLSAW PAPGKKTIVAFFTHTADFNSWEYAQKLRHY P+IDDAGVGVVGVSLGTVDAA+DFCAETGFPLDNMFMDATG+AYSALGFSNGFEPRLPGD+K+NPYLRLLPMLAGIGSPGTIQAVLKGYVGDPN+NADW+SSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKL+PPDKELITQQGGTVVFEGR++IY+YKDK L+ L
Sbjct: 13 LETSTTSDEYELLRGVSVKSASSGKEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKGILVYTDVL 258
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A835Z7Y9_9STRA (AhpC/TSA antioxidant enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y9_9STRA) HSP 1 Score: 299 bits (765), Expect = 3.220e-96 Identity = 152/289 (52.60%), Postives = 197/289 (68.17%), Query Frame = 3
Query: 54 LGFTALFDPAAGFVPRGHCVKRRAGFDSGERLQKTTSARPRRISRCNASGSSLETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDK 920
L TAL A F P G S R+ A R ++ ++S S T + +++L + V A+ G+ + L AW GKKT+VAF TH ADFN+WEYAQKLRHY P IDDAG V+ V LGTV AAK+F + T FPL +++D TGRAY LGFS GF+P + K+NPYL+LLPMLAGIGSPGTIQAVL+GYVGD +A+A W+ S L +V+ + FD LGT+G+RP EVAT+RLQNMR+IVT+W+ LSPP+KELIT QGGT++F+G+ +Y Y D+
Sbjct: 4 LVLTALSASAVAFTPAAQ-----PGSASPLRIASNRGAL-RLLTVASSSTVSSRTGASETAFDVLSEVNVLSAATGQPLPLTQAWKAKKGKKTVVAFLTHFADFNAWEYAQKLRHYLPAIDDAGAEVIAVGLGTVAAAKEFASLTNFPLQRLYVDETGRAYEELGFSKGFQPPV----KVNPYLKLLPMLAGIGSPGTIQAVLRGYVGDRDADASWVESTLQLVEKRRFDVLGTQGARPFEVATVRLQNMREIVTRWDDLSPPNKELITWQGGTLIFDGKEVVYQYNDR 282
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: W7TVS2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVS2_9STRA) HSP 1 Score: 237 bits (604), Expect = 8.110e-72 Identity = 128/251 (51.00%), Postives = 159/251 (63.35%), Query Frame = 3
Query: 186 RCNASGSSLETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETG-FPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALS-----MVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDK 920
R + SS +S EY LL+ V A G + L + P GK TIVAF TH DFNS+EYAQKL HY P+++ A V VV V +GTV AA+ F + G FPLD ++ D + +Y GFS GF LP +NPYL+LLPMLAGIGSPGT+QAVL GYVGD A+A W L +VD FD LG G+RP EVAT+RLQNM I+ W L PP+K+LITQQGG++VFEGR + Y+D+
Sbjct: 49 RLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLP----VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDR 294
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A383VHC5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VHC5_TETOB) HSP 1 Score: 218 bits (555), Expect = 9.630e-65 Identity = 111/231 (48.05%), Postives = 152/231 (65.80%), Query Frame = 3
Query: 228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRH-YFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
S EYE L+G+ V A+ G E++LLS W P P + ++ F TH AD +SWEYAQKL P++ + G+ V+ V LG+ + A+ F + FPL+ ++ D TG AYSALGFS GF P +NPY++LLPMLAGIGSPGT+Q V++GYVGD +A + S+ FD LG RP E+ATLRL NM I+ KW +LSPPD +L+ QQGG++VF+G + I+ + D
Sbjct: 34 SAEYEALKGVKVFSAADGFEVELLSLWQPGPDTRVVIPFLTHFADLSSWEYAQKLNQKVLPQLREQGLQVITVGLGSPENARLFSSTLDFPLEGLYADPTGAAYSALGFSPGFAP----GADINPYMKLLPMLAGIGSPGTLQEVIRGYVGDRSAKPVFNSAT-------PFDILGQNYQRPFELATLRLFNMIGILPKWGELSPPDTKLLVQQGGSLVFKGTDVIFRHND 253
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A8J4CWY6_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CWY6_9CHLO) HSP 1 Score: 213 bits (541), Expect = 9.870e-63 Identity = 110/230 (47.83%), Postives = 140/230 (60.87%), Query Frame = 3
Query: 228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
S EYE LRG +AS G+ ++LLS W P P K ++ F TH AD SWE+AQKL + P ++ +GV V V LG+V A++F FPLD ++ Y LGFS GF P D +NPYL+LLPMLAGIGSPGT+Q V++GYVGD A + S FD LG RP E+ATLRL NM I+ KWN+L PPD L+TQQGG +VF G ++ + D
Sbjct: 36 SAEYEALRGKVAYKASSGDPVELLSLWEPYPTSKAVIPFLTHFADLTSWEFAQKLVKHIPTLEGSGVRVFAVGLGSVSNAQEFARTLNFPLDRLYALPEPSLYRDLGFSAGFAP----DLDVNPYLKLLPMLAGIGSPGTVQEVIRGYVGDQAAKPVFDSPT-------PFDVLGPGYQRPFELATLRLFNMMGILPKWNELCPPDPRLLTQQGGCLVFSGEQVVFKHVD 254
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A699YK20_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YK20_HAELA) HSP 1 Score: 213 bits (543), Expect = 1.440e-62 Identity = 106/228 (46.49%), Postives = 146/228 (64.04%), Query Frame = 3
Query: 234 EYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
EY+ LR +TV RA GE ++LLS W PG K ++ F TH AD SWEYAQKL P ++ +GV V+ V LG+ A++F + FP +F D +G AY ALGF+ GF P D ++PY +LLPMLAG+GS GT+Q V++GY+GD A + + FD LGT RP E+ATLRL NM ++++WN LSPP++ L+TQQGGT+ F+G+ I+ + D
Sbjct: 76 EYDQLRDLTVYRAGSGEPVELLSLWQARPGSKVVMPFLTHFADLTSWEYAQKLVKIMPMLEASGVQVIAVGLGSAANAQEFARDLRFPATKLFADPSGAAYKALGFNPGFLP----DLDISPYAKLLPMLAGVGSEGTLQEVVRGYIGDRAAQPVFDRAT-------PFDILGTGYQRPFELATLRLFNMVGVLSRWNVLSPPNQALLTQQGGTLAFDGQEVIFKHVD 292
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: D8TR67_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TR67_VOLCA) HSP 1 Score: 212 bits (539), Expect = 1.900e-62 Identity = 110/231 (47.62%), Postives = 143/231 (61.90%), Query Frame = 3
Query: 228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMF-MDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
S EYE LRG +AS G+ ++LLS W PAP K +++F TH AD +SWE+AQKL P ++ +GV + V LG+V A++F FPLD ++ M G Y LGFS GF P D +NPYL+L+PMLAG+GSPGT+Q VL+GYVGD A + S FD LG RP E+ATLRL NM I+ KW++L P D L+TQQGG VVF G ++ + D
Sbjct: 34 SAEYEALRGKVAYKASSGDPVELLSLWEPAPTSKAVISFLTHFADLSSWEFAQKLVKVIPTLEGSGVRFLAVGLGSVGNAQEFARTLNFPLDRLYAMPEGGELYRQLGFSAGFAP----DLNVNPYLKLVPMLAGVGSPGTVQEVLRGYVGDKTAKPVFDSPT-------PFDVLGPGYQRPFELATLRLFNMMGILPKWSELCPADPSLLTQQGGCVVFAGEQVVFKHVD 253
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A836BNE7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNE7_9CHLO) HSP 1 Score: 210 bits (535), Expect = 6.870e-62 Identity = 110/231 (47.62%), Postives = 146/231 (63.20%), Query Frame = 3
Query: 228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRA-YSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
S EY+ LRG +AS G+ ++LLS W P PG K ++AF TH AD +SWE AQKL P ++ +GV V V LG+V A++F P+D ++ G A Y ALGFS GF LP ++PYL+LLPMLAG+GSPGT+Q V++GYVGD A + S FD LG RP E+ATLRL NM I+ KW++LSPPD+ L+TQQGG++VF G ++ + D
Sbjct: 29 SAEYDTLRGAVAYKASSGDPVELLSLWEPVPGSKAVIAFLTHFADLSSWELAQKLVKVIPTLEASGVRVALVGLGSVQNAQEFARVLNVPMDRLYASPDGGALYRALGFSGGFGEDLP----VSPYLKLLPMLAGVGSPGTLQEVIRGYVGDQAAKPVFDSPT-------PFDILGAGYQRPFELATLRLFNMIGILPKWSELSPPDETLLTQQGGSLVFSGDAVLFKHVD 248
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A835T004_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T004_9CHLO) HSP 1 Score: 205 bits (522), Expect = 4.970e-60 Identity = 108/231 (46.75%), Postives = 144/231 (62.34%), Query Frame = 3
Query: 228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
S EYE LRG +AS G+ +D+ S W P G K +V TH AD SWE QKL P ++ +GV VV V LG+V+ A++F FP+D ++ Y ALGF+ GF P+L +++PY++LLPMLAG+GSPGTIQ VL+GYVGD +SA + D+ FD LG+ RP E+ATLRL NM I+ KW +L PPD L+TQQGG +VF G + +Y + D
Sbjct: 16 SAEYEALRGKVAFKASSGDGVDITSLWEPVLGSKAVVVCLTHFADLTSWELGQKLIKIIPTLEGSGVRVVVVGLGSVNNAQEFARILKFPMDRLYAYPAADLYQALGFNPGFAPQL----QVSPYVKLLPMLAGVGSPGTIQEVLRGYVGD--------NSAPPVFDSPTPFDILGSGYQRPFELATLRLFNMMGILPKWQELCPPDTSLLTQQGGALVFSGTSVVYKHVD 234
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A250XFY5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XFY5_9CHLO) HSP 1 Score: 205 bits (522), Expect = 6.310e-60 Identity = 106/228 (46.49%), Postives = 140/228 (61.40%), Query Frame = 3
Query: 234 EYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
EY L+GI+V +A+ E ++LLS W PG K + F TH AD +SWEYAQKL P ++D+GV V V +G+ A++F FP D ++ D AY ALGFS GF P L +++PY +L+ M AGIGSPGT+Q V +GY+GD SS FD LGT RP+E+ATLRL NM I+ KW +LSPPD+ L+ QQGGTVV +G I+ + D
Sbjct: 40 EYNQLKGISVVKANTNERVELLSLWQAEPGTKVAIPFLTHFADLSSWEYAQKLVKVLPTLEDSGVKVFVVGIGSAANAQEFSRALKFPSDRLYADPEATAYKALGFSPGFAPGL----EISPYAKLITMCAGIGSPGTLQEVFRGYLGDK-------SSKPVFEGPTPFDVLGTGYQRPMELATLRLFNMVAILPKWGELSPPDQSLVVQQGGTVVLDGTETIFRHDD 256 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16471.1 >prot_C-linearis_contig9.16471.1 ID=prot_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=343bp MRCAVGLALSCGLGFTALFDPAAGFVPRGHCVKRRAGFDSGERLQKTTSAback to top mRNA from alignment at C-linearis_contig9:328412..332059- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16471.1 ID=mRNA_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3648bp|location=Sequence derived from alignment at C-linearis_contig9:328412..332059- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:328412..332059- >mRNA_C-linearis_contig9.16471.1 ID=mRNA_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at C-linearis_contig9:328412..332059- (Chordaria linearis ClinC8C monoicous)back to top |