mRNA_C-linearis_contig9.16471.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16471.1
Unique NamemRNA_C-linearis_contig9.16471.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: D7G2X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X3_ECTSI)

HSP 1 Score: 457 bits (1176), Expect = 5.050e-159
Identity = 220/246 (89.43%), Postives = 236/246 (95.93%), Query Frame = 3
Query:  210 LETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDKVRLLLASCL 947
            LETSTTSDEYELLRG++VK AS G+E+DLLSAW PAPGKKTIVAFFTHTADFNSWEYAQKLRHY P+IDDAGVGVVGVSLGTVDAA+DFCAETGFPLDNMFMDATG+AYSALGFSNGFEPRLPGD+K+NPYLRLLPMLAGIGSPGTIQAVLKGYVGDPN+NADW+SSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKL+PPDKELITQQGGTVVFEGR++IY+YKDK  L+    L
Sbjct:   13 LETSTTSDEYELLRGVSVKSASSGKEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKGILVYTDVL 258          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A835Z7Y9_9STRA (AhpC/TSA antioxidant enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y9_9STRA)

HSP 1 Score: 299 bits (765), Expect = 3.220e-96
Identity = 152/289 (52.60%), Postives = 197/289 (68.17%), Query Frame = 3
Query:   54 LGFTALFDPAAGFVPRGHCVKRRAGFDSGERLQKTTSARPRRISRCNASGSSLETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDK 920
            L  TAL   A  F P         G  S  R+     A  R ++  ++S  S  T  +   +++L  + V  A+ G+ + L  AW    GKKT+VAF TH ADFN+WEYAQKLRHY P IDDAG  V+ V LGTV AAK+F + T FPL  +++D TGRAY  LGFS GF+P +    K+NPYL+LLPMLAGIGSPGTIQAVL+GYVGD +A+A W+ S L +V+ + FD LGT+G+RP EVAT+RLQNMR+IVT+W+ LSPP+KELIT QGGT++F+G+  +Y Y D+
Sbjct:    4 LVLTALSASAVAFTPAAQ-----PGSASPLRIASNRGAL-RLLTVASSSTVSSRTGASETAFDVLSEVNVLSAATGQPLPLTQAWKAKKGKKTVVAFLTHFADFNAWEYAQKLRHYLPAIDDAGAEVIAVGLGTVAAAKEFASLTNFPLQRLYVDETGRAYEELGFSKGFQPPV----KVNPYLKLLPMLAGIGSPGTIQAVLRGYVGDRDADASWVESTLQLVEKRRFDVLGTQGARPFEVATVRLQNMREIVTRWDDLSPPNKELITWQGGTLIFDGKEVVYQYNDR 282          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: W7TVS2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVS2_9STRA)

HSP 1 Score: 237 bits (604), Expect = 8.110e-72
Identity = 128/251 (51.00%), Postives = 159/251 (63.35%), Query Frame = 3
Query:  186 RCNASGSSLETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETG-FPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALS-----MVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKDK 920
            R +   SS     +S EY LL+   V  A  G  + L   + P  GK TIVAF TH  DFNS+EYAQKL HY P+++ A V VV V +GTV AA+ F +  G FPLD ++ D +  +Y   GFS GF   LP    +NPYL+LLPMLAGIGSPGT+QAVL GYVGD  A+A W    L      +VD   FD LG  G+RP EVAT+RLQNM  I+  W  L PP+K+LITQQGG++VFEGR  +  Y+D+
Sbjct:   49 RLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLP----VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDR 294          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A383VHC5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VHC5_TETOB)

HSP 1 Score: 218 bits (555), Expect = 9.630e-65
Identity = 111/231 (48.05%), Postives = 152/231 (65.80%), Query Frame = 3
Query:  228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRH-YFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            S EYE L+G+ V  A+ G E++LLS W P P  + ++ F TH AD +SWEYAQKL     P++ + G+ V+ V LG+ + A+ F +   FPL+ ++ D TG AYSALGFS GF P       +NPY++LLPMLAGIGSPGT+Q V++GYVGD +A   + S+         FD LG    RP E+ATLRL NM  I+ KW +LSPPD +L+ QQGG++VF+G + I+ + D
Sbjct:   34 SAEYEALKGVKVFSAADGFEVELLSLWQPGPDTRVVIPFLTHFADLSSWEYAQKLNQKVLPQLREQGLQVITVGLGSPENARLFSSTLDFPLEGLYADPTGAAYSALGFSPGFAP----GADINPYMKLLPMLAGIGSPGTLQEVIRGYVGDRSAKPVFNSAT-------PFDILGQNYQRPFELATLRLFNMIGILPKWGELSPPDTKLLVQQGGSLVFKGTDVIFRHND 253          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A8J4CWY6_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CWY6_9CHLO)

HSP 1 Score: 213 bits (541), Expect = 9.870e-63
Identity = 110/230 (47.83%), Postives = 140/230 (60.87%), Query Frame = 3
Query:  228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            S EYE LRG    +AS G+ ++LLS W P P  K ++ F TH AD  SWE+AQKL  + P ++ +GV V  V LG+V  A++F     FPLD ++       Y  LGFS GF P    D  +NPYL+LLPMLAGIGSPGT+Q V++GYVGD  A   + S          FD LG    RP E+ATLRL NM  I+ KWN+L PPD  L+TQQGG +VF G   ++ + D
Sbjct:   36 SAEYEALRGKVAYKASSGDPVELLSLWEPYPTSKAVIPFLTHFADLTSWEFAQKLVKHIPTLEGSGVRVFAVGLGSVSNAQEFARTLNFPLDRLYALPEPSLYRDLGFSAGFAP----DLDVNPYLKLLPMLAGIGSPGTVQEVIRGYVGDQAAKPVFDSPT-------PFDVLGPGYQRPFELATLRLFNMMGILPKWNELCPPDPRLLTQQGGCLVFSGEQVVFKHVD 254          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A699YK20_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YK20_HAELA)

HSP 1 Score: 213 bits (543), Expect = 1.440e-62
Identity = 106/228 (46.49%), Postives = 146/228 (64.04%), Query Frame = 3
Query:  234 EYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            EY+ LR +TV RA  GE ++LLS W   PG K ++ F TH AD  SWEYAQKL    P ++ +GV V+ V LG+   A++F  +  FP   +F D +G AY ALGF+ GF P    D  ++PY +LLPMLAG+GS GT+Q V++GY+GD  A   +  +         FD LGT   RP E+ATLRL NM  ++++WN LSPP++ L+TQQGGT+ F+G+  I+ + D
Sbjct:   76 EYDQLRDLTVYRAGSGEPVELLSLWQARPGSKVVMPFLTHFADLTSWEYAQKLVKIMPMLEASGVQVIAVGLGSAANAQEFARDLRFPATKLFADPSGAAYKALGFNPGFLP----DLDISPYAKLLPMLAGVGSEGTLQEVVRGYIGDRAAQPVFDRAT-------PFDILGTGYQRPFELATLRLFNMVGVLSRWNVLSPPNQALLTQQGGTLAFDGQEVIFKHVD 292          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: D8TR67_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TR67_VOLCA)

HSP 1 Score: 212 bits (539), Expect = 1.900e-62
Identity = 110/231 (47.62%), Postives = 143/231 (61.90%), Query Frame = 3
Query:  228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMF-MDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            S EYE LRG    +AS G+ ++LLS W PAP  K +++F TH AD +SWE+AQKL    P ++ +GV  + V LG+V  A++F     FPLD ++ M   G  Y  LGFS GF P    D  +NPYL+L+PMLAG+GSPGT+Q VL+GYVGD  A   + S          FD LG    RP E+ATLRL NM  I+ KW++L P D  L+TQQGG VVF G   ++ + D
Sbjct:   34 SAEYEALRGKVAYKASSGDPVELLSLWEPAPTSKAVISFLTHFADLSSWEFAQKLVKVIPTLEGSGVRFLAVGLGSVGNAQEFARTLNFPLDRLYAMPEGGELYRQLGFSAGFAP----DLNVNPYLKLVPMLAGVGSPGTVQEVLRGYVGDKTAKPVFDSPT-------PFDVLGPGYQRPFELATLRLFNMMGILPKWSELCPADPSLLTQQGGCVVFAGEQVVFKHVD 253          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A836BNE7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNE7_9CHLO)

HSP 1 Score: 210 bits (535), Expect = 6.870e-62
Identity = 110/231 (47.62%), Postives = 146/231 (63.20%), Query Frame = 3
Query:  228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRA-YSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            S EY+ LRG    +AS G+ ++LLS W P PG K ++AF TH AD +SWE AQKL    P ++ +GV V  V LG+V  A++F      P+D ++    G A Y ALGFS GF   LP    ++PYL+LLPMLAG+GSPGT+Q V++GYVGD  A   + S          FD LG    RP E+ATLRL NM  I+ KW++LSPPD+ L+TQQGG++VF G   ++ + D
Sbjct:   29 SAEYDTLRGAVAYKASSGDPVELLSLWEPVPGSKAVIAFLTHFADLSSWELAQKLVKVIPTLEASGVRVALVGLGSVQNAQEFARVLNVPMDRLYASPDGGALYRALGFSGGFGEDLP----VSPYLKLLPMLAGVGSPGTLQEVIRGYVGDQAAKPVFDSPT-------PFDILGAGYQRPFELATLRLFNMIGILPKWSELSPPDETLLTQQGGSLVFSGDAVLFKHVD 248          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A835T004_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T004_9CHLO)

HSP 1 Score: 205 bits (522), Expect = 4.970e-60
Identity = 108/231 (46.75%), Postives = 144/231 (62.34%), Query Frame = 3
Query:  228 SDEYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            S EYE LRG    +AS G+ +D+ S W P  G K +V   TH AD  SWE  QKL    P ++ +GV VV V LG+V+ A++F     FP+D ++       Y ALGF+ GF P+L    +++PY++LLPMLAG+GSPGTIQ VL+GYVGD        +SA  + D+   FD LG+   RP E+ATLRL NM  I+ KW +L PPD  L+TQQGG +VF G + +Y + D
Sbjct:   16 SAEYEALRGKVAFKASSGDGVDITSLWEPVLGSKAVVVCLTHFADLTSWELGQKLIKIIPTLEGSGVRVVVVGLGSVNNAQEFARILKFPMDRLYAYPAADLYQALGFNPGFAPQL----QVSPYVKLLPMLAGVGSPGTIQEVLRGYVGD--------NSAPPVFDSPTPFDILGSGYQRPFELATLRLFNMMGILPKWQELCPPDTSLLTQQGGALVFSGTSVVYKHVD 234          
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Match: A0A250XFY5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XFY5_9CHLO)

HSP 1 Score: 205 bits (522), Expect = 6.310e-60
Identity = 106/228 (46.49%), Postives = 140/228 (61.40%), Query Frame = 3
Query:  234 EYELLRGITVKRASGGEEIDLLSAWNPAPGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAAKDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD 917
            EY  L+GI+V +A+  E ++LLS W   PG K  + F TH AD +SWEYAQKL    P ++D+GV V  V +G+   A++F     FP D ++ D    AY ALGFS GF P L    +++PY +L+ M AGIGSPGT+Q V +GY+GD        SS         FD LGT   RP+E+ATLRL NM  I+ KW +LSPPD+ L+ QQGGTVV +G   I+ + D
Sbjct:   40 EYNQLKGISVVKANTNERVELLSLWQAEPGTKVAIPFLTHFADLSSWEYAQKLVKVLPTLEDSGVKVFVVGIGSAANAQEFSRALKFPSDRLYADPEATAYKALGFSPGFAPGL----EISPYAKLITMCAGIGSPGTLQEVFRGYLGDK-------SSKPVFEGPTPFDVLGTGYQRPMELATLRLFNMVAILPKWGELSPPDQSLVVQQGGTVVLDGTETIFRHDD 256          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X3_ECTSI5.050e-15989.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7Y9_9STRA3.220e-9652.60AhpC/TSA antioxidant enzyme-domain-containing prot... [more]
W7TVS2_9STRA8.110e-7251.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A383VHC5_TETOB9.630e-6548.05Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A8J4CWY6_9CHLO9.870e-6347.83Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A699YK20_HAELA1.440e-6246.49Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
D8TR67_VOLCA1.900e-6247.62Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A836BNE7_9CHLO6.870e-6247.62Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835T004_9CHLO4.970e-6046.75Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A250XFY5_9CHLO6.310e-6046.49Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:328412..332059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.8
Seed ortholog evalue2.3e-126
Seed eggNOG ortholog2880.D7G2X3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.AhpC/TSA antioxidant enzyme
EggNOG OGs2CY4S@1,2S21S@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-09_004590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1233
Cds size1029
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16471.1prot_C-linearis_contig9.16471.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 328599..332042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.051719-UTR-C-linearis_contig9:328411..3285981622930714.051719-UTR-C-linearis_contig9:328411..328598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 328412..328598 -
1690881211.1445472-UTR-C-linearis_contig9:328411..3285981690881211.1445472-UTR-C-linearis_contig9:328411..328598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 328412..328598 -
1622930714.2295997-UTR-C-linearis_contig9:332042..3320591622930714.2295997-UTR-C-linearis_contig9:332042..332059Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 332043..332059 -
1690881211.2191508-UTR-C-linearis_contig9:332042..3320591690881211.2191508-UTR-C-linearis_contig9:332042..332059Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 332043..332059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.0700386-CDS-C-linearis_contig9:328598..3289881622930714.0700386-CDS-C-linearis_contig9:328598..328988Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 328599..328988 -
1690881211.1548483-CDS-C-linearis_contig9:328598..3289881690881211.1548483-CDS-C-linearis_contig9:328598..328988Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 328599..328988 -
1622930714.084356-CDS-C-linearis_contig9:329309..3293311622930714.084356-CDS-C-linearis_contig9:329309..329331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 329310..329331 -
1690881211.168006-CDS-C-linearis_contig9:329309..3293311690881211.168006-CDS-C-linearis_contig9:329309..329331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 329310..329331 -
1622930714.1584172-CDS-C-linearis_contig9:329698..3298171622930714.1584172-CDS-C-linearis_contig9:329698..329817Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 329699..329817 -
1690881211.1787567-CDS-C-linearis_contig9:329698..3298171690881211.1787567-CDS-C-linearis_contig9:329698..329817Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 329699..329817 -
1622930714.1763875-CDS-C-linearis_contig9:330084..3302261622930714.1763875-CDS-C-linearis_contig9:330084..330226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 330085..330226 -
1690881211.187913-CDS-C-linearis_contig9:330084..3302261690881211.187913-CDS-C-linearis_contig9:330084..330226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 330085..330226 -
1622930714.1974587-CDS-C-linearis_contig9:330731..3308621622930714.1974587-CDS-C-linearis_contig9:330731..330862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 330732..330862 -
1690881211.1979337-CDS-C-linearis_contig9:330731..3308621690881211.1979337-CDS-C-linearis_contig9:330731..330862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 330732..330862 -
1622930714.213272-CDS-C-linearis_contig9:331817..3320421622930714.213272-CDS-C-linearis_contig9:331817..332042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 331818..332042 -
1690881211.2084546-CDS-C-linearis_contig9:331817..3320421690881211.2084546-CDS-C-linearis_contig9:331817..332042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 331818..332042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16471.1

>prot_C-linearis_contig9.16471.1 ID=prot_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=343bp
MRCAVGLALSCGLGFTALFDPAAGFVPRGHCVKRRAGFDSGERLQKTTSA
RPRRISRCNASGSSLETSTTSDEYELLRGITVKRASGGEEIDLLSAWNPA
PGKKTIVAFFTHTADFNSWEYAQKLRHYFPKIDDAGVGVVGVSLGTVDAA
KDFCAETGFPLDNMFMDATGRAYSALGFSNGFEPRLPGDKKLNPYLRLLP
MLAGIGSPGTIQAVLKGYVGDPNANADWISSALSMVDNKEFDFLGTRGSR
PLEVATLRLQNMRQIVTKWNKLSPPDKELITQQGGTVVFEGRNEIYSYKD
KVRLLLASCLSRVHQDAVVFYCTAVHPKLCARACFTAPRRGA*
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mRNA from alignment at C-linearis_contig9:328412..332059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16471.1 ID=mRNA_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3648bp|location=Sequence derived from alignment at C-linearis_contig9:328412..332059- (Chordaria linearis ClinC8C monoicous)
GCCTGCCCACAAGAAAGATGCGGTGTGCCGTGGGACTTGCCCTTTCGTGC GGCTTGGGCTTCACTGCCCTGTTTGACCCAGCGGCTGGTTTCGTGCCGCG GGGGCATTGCGTGAAGAGGCGGGCCGGGTTCGACTCAGGGGAGAGGTTGC AGAAAACAACGTCAGCAAGGCCGCGGAGGATTAGCAGATGCAACGCCAGC GGCAGCAGCCTGGAGACATCCACGACCTCTGATGAGTACGAGGTGAGCGG TTCGCTGGGATAATGCAAGATAAATTCCGTGCCAGTTCGTCGGCGTTTGC GCTGTTCTTGAAATGCAAATGGACAAATGCAACATCAAACAGGACTACAG CAGTCTAGAACGTCGAGTTTTTTGCAGTTTTCTGACGAGTGTGTTGTTGG GCGACGCAGTGACGACGGCATGGTTTATGTATCTCGAGGAGCCGAAGGTC CACACGTCTAGCAGGAGGAGGCGAGACTTGTGGTTGCGAGTCGACGGCTG GATCAAGTCAGGCCTTTATCACCAACATATTGGTACAATCAAAGTTGTCG ATTTGTTCATGATCTTGCTGCTGCAGCAGTTCTCCGACGATGTGACAGGC TCGAGTTGACCCATCATTCCAGCAGGAGTAGACTTTATGAAAATATGGTG GAGTGAGAGAGCACAACAGCAGTACCCATCCAACTGTCTAGTAGTACATA CCTTTCTCGGCAAAAAAAGGCTTTCTAGCAAGACTTGGTGTGTAGCGTTC CCGTAAACAGCAAGCAACAACACCATCTACAAGACACAAGAACTCGACTA GACGACGGCAGTGGCTTTCGAGAAACAACTGGCTCTCTCTCGAAGCTCAG GTCCCGGAATTAGGTATTTACTGGTAGCAGAGAACGCCGCCTGCACGTTG TATGTCTGCGTGTAGAGAAAGGAGGGCTGGTATTCCCCGATTAACCCTGG TGCTGTTACGGGGTGAACCCCCTCTCCAACAGGCTGGCGTTGCTGCACGC GTATGTGAACACTGCACTCGAAAGCGGTTGCCCTGCTTGACAAGGATCCT TTTTCTCTTCCTCTCTCTCTCTCTCTCTCTCTCATCCACAACTTCCTCAT CATGCCCCAAGTACGCCCCTACGATGTTTCGGAATTGTTGATTGCTGACG ACTCCATACATGTACATACATCGTGGATGAACAACGTTTTTTGACAGCTA CTGCGGGGGATTACCGTGAAACGGGCGTCAGGCGGCGAGGAAATCGACCT GCTCAGTGCTTGGAACCCGGCACCAGGAAAGAAGACCATCGTTGCCTTCT TCACCCACACGGCCGACTTCAATTCCTGGTGATGGTGACTGGCTCATTGT ATTGTGTTTACCGGGGGGGAGCGGTGGGAGGTTAACGTCGGGCTTTGCTC ATCAGAATGAAACGGTTTGATCTGGTATCTCGCAGGGAGTAGCAGTAAGC GTTCCACTTGTGCGATGGCTTCGATAGTTATCTCGCTGATCACAGCAGTC GAGGTGTCCCGAGATACAGTAGATAGGATGAGATTTACGGACGAGGCGTG TACTTTGCATCCTGCGTTCCTGAAAGTCTTGCCCCGGGTGGTAGCGGCAG TATCCACTGCAAAAAACGCTTGAGCGACACCAACAGTCTATAAGCACTAA GGCCTACAGTTGTGTCCACGTGCGAAGCGATCGAGCCACCCGTTTTTTTC GTTTCTCTTGGAGGCTAAGTCAGGAAATAAAAGCTTGACATTGTATTCTT CGCGTCCTCTCGTGTGCAAGCCTCCGGCGCGAATCTCATAAACACCTGTT TCGATCTGGCATGTTTCAAACACGCGTATCCAGGGAGTACGCCCAAAAGC TTCGTCACTATTTTCCAAAAATTGATGACGCGGGCGTTGGGGTGGTGGGG GTTAGCCTCGGAACCGTAGACGCTGCCAAGGACTTTTGCGCCGAGACGGG GTTCCCCCTGGACAACATGTTCATGGTGAGCCTCTGCCTCGGTCTCTGCC TCTCCGTCGCCGGATTGATCGGTCGTGTGTGCTGCACCGATTTTTGGGCT GTTTTGATGTATTTTTGCAGCGTGCTTGGGTGTCACGAGTACCATGCGTG TTGTCGCCGTTCTTTGCAGAGATACGGAACGACAAGTTTTCTCCACGTTT TTGGAGCACCCCCTCTTTAATCGGCTTTGTTCGAACATTCCTGGACATGC GTTTTTTTCTCTCCGATCTCTTGATCCGCTTCTGCTGCGCAGGATGCCAC CGGAAGGGCCTATTCGGCGCTTGGCTTCTCCAATGGCTTTGAGCCTCGAT TGCCGGGGGATAAGAAACTCAATCCGTACCTGCGTCTTTTGCCCATGTTG GCCGGCATCGGGTACGTGCTTTTTTCAATGGTATGGATTTCTTTGAGCCA GACAGCGATCCGCATTTGCCAGGCGAGGGCCGTGGAACACTGTCGGCCAA CCGGCTGGCATGGATGGTATTTCTGCGCTAGCTAAACTGTTGTAAGGAGG GCCGCCGCACCCGATGGCCTGGTAGTCCTGCTGTCACCAGCGGTCTAGAA TGCTGAACCATGAGGCGCGCGCTGGCCGCGATGTCCGGTGCCACCCAACT AGGACGCCCCTTCCCTTTCCGAAACGCGCAAGTTTACGTTCTAACGCCCT CTCTTCGGTGCGCTGTTGTTTTTTCGTACCATGGACGTCTACCGGGCTGC GCTACCCCCCTTGCCTCATGTGGCGCAGGTCACCGGGCACTATCCAAGCG GTGAGATTCGGGGTGGGTGCTACCCAAAGCCGTATGTATGTACCACTGGC ATTGTGCCCGCGCCCGTTGCTCGCATAGGCGAGGGGTTGTAGGCTGGTGG ATACTTTGAGTTCGACTCAGATTGACTTTGGGCTTGTTTACGTTGCCTAC TGTAACTCACACGTCTGGTTCATGGTGCAGAATGTTGCGCCCAACCGGGG GCACAAAGCATGCAAGTCAAAGCCAGGGTGGGATCGACCGCCTGAAGCGG CTATTAATGGTGACGCCCCAGACATGTCCCTTTTTGAGTGCGTGTGTCTT TGATGTGCCGTCCACTTCCAGGTTTTGAAAGGCTACGTTGGGGATCCGAA CGCAAACGCAGACTGGATTTCGAGTGCTTTGTCCATGGTCGACAACAAGG AGTTCGACTTCCTGGGGACGCGGGGGTCGAGGCCTCTAGAGGTCGCCACA CTCCGGTTGCAAAACATGCGCCAGATCGTCACCAAATGGAACAAGCTTTC CCCGCCCGACAAGGAGCTCATCACGCAGCAGGGAGGGACCGTGGTCTTTG AGGGCCGGAATGAGATCTACAGCTACAAGGATAAAGTGAGGTTGCTCTTG GCCTCTTGCCTTTCCCGTGTTCACCAAGATGCAGTGGTGTTCTACTGTAC AGCAGTGCACCCTAAGCTCTGTGCGCGCGCATGCTTTACTGCCCCTCGTC GAGGGGCGTGAGCGTCGTCGTCGAATATGTGGAACGTTTGTTGTCTGCGA AGTCTGACGTTGCTGCTGCTGTTGCACTTTTTCTTGCAGCGAGGTTCAGA CGCCCAACCGGGGCAGACGACCGGCTGCGTGAGCCCTCACGTTGTGTGCA TGTAAAGTGCCGCGACTCTACGGTTATGTTCGATTGTACGCTCATTCC
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Coding sequence (CDS) from alignment at C-linearis_contig9:328412..332059-

>mRNA_C-linearis_contig9.16471.1 ID=mRNA_C-linearis_contig9.16471.1|Name=mRNA_C-linearis_contig9.16471.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at C-linearis_contig9:328412..332059- (Chordaria linearis ClinC8C monoicous)
ATGCGGTGTGCCGTGGGACTTGCCCTTTCGTGCGGCTTGGGCTTCACTGC
CCTGTTTGACCCAGCGGCTGGTTTCGTGCCGCGGGGGCATTGCGTGAAGA
GGCGGGCCGGGTTCGACTCAGGGGAGAGGTTGCAGAAAACAACGTCAGCA
AGGCCGCGGAGGATTAGCAGATGCAACGCCAGCGGCAGCAGCCTGGAGAC
ATCCACGACCTCTGATGAGTACGAGATGCGGTGTGCCGTGGGACTTGCCC
TTTCGTGCGGCTTGGGCTTCACTGCCCTGTTTGACCCAGCGGCTGGTTTC
GTGCCGCGGGGGCATTGCGTGAAGAGGCGGGCCGGGTTCGACTCAGGGGA
GAGGTTGCAGAAAACAACGTCAGCAAGGCCGCGGAGGATTAGCAGATGCA
ACGCCAGCGGCAGCAGCCTGGAGACATCCACGACCTCTGATGAGTACGAG
CTACTGCGGGGGATTACCGTGAAACGGGCGTCAGGCGGCGAGGAAATCGA
CCTGCTCAGTGCTTGGAACCCGGCACCAGGAAAGAAGACCATCGTTGCCT
TCTTCACCCACACGGCCGACTTCAATTCCTGCTACTGCGGGGGATTACCG
TGAAACGGGCGTCAGGCGGCGAGGAAATCGACCTGCTCAGTGCTTGGAAC
CCGGCACCAGGAAAGAAGACCATCGTTGCCTTCTTCACCCACACGGCCGA
CTTCAATTCCTGGGAGTACGCCCAAAAGCTTCGTCACTATTTTCCAAAAA
TTGATGACGCGGGCGTTGGGGTGGTGGGGGTTAGCCTCGGAACCGTAGAC
GCTGCCAAGGACTTTTGCGCCGAGACGGGGTTCCCCCTGGACAACATGTT
CATGGGAGTACGCCCAAAAGCTTCGTCACTATTTTCCAAAAATTGATGAC
GCGGGCGTTGGGGTGGTGGGGGTTAGCCTCGGAACCGTAGACGCTGCCAA
GGACTTTTGCGCCGAGACGGGGTTCCCCCTGGACAACATGTTCATGGATG
CCACCGGAAGGGCCTATTCGGCGCTTGGCTTCTCCAATGGCTTTGAGCCT
CGATTGCCGGGGGATAAGAAACTCAATCCGTACCTGCGTCTTTTGCCCAT
GTTGGCCGGCATCGGGATGCCACCGGAAGGGCCTATTCGGCGCTTGGCTT
CTCCAATGGCTTTGAGCCTCGATTGCCGGGGGATAAGAAACTCAATCCGT
ACCTGCGTCTTTTGCCCATGTTGGCCGGCATCGGGTCACCGGGCACTATC
CAAGCGGTCACCGGGCACTATCCAAGCGGTTTTGAAAGGCTACGTTGGGG
ATCCGAACGCAAACGCAGACTGGATTTCGAGTGCTTTGTCCATGGTCGAC
AACAAGGAGTTCGACTTCCTGGGGACGCGGGGGTCGAGGCCTCTAGAGGT
CGCCACACTCCGGTTGCAAAACATGCGCCAGATCGTCACCAAATGGAACA
AGCTTTCCCCGCCCGACAAGGAGCTCATCACGCAGCAGGGAGGGACCGTG
GTCTTTGAGGGCCGGAATGAGATCTACAGCTACAAGGATAAAGTGAGGTT
GCTCTTGGCCTCTTGCCTTTCCCGTGTTCACCAAGATGCAGTGGTGTTCT
ACTGTACAGCAGTGCACCCTAAGCTCTGTGCGCGCGCATGCTTTACTGCC
CCTCGTCGAGGGGCGTGAGTTTTGAAAGGCTACGTTGGGGATCCGAACGC
AAACGCAGACTGGATTTCGAGTGCTTTGTCCATGGTCGACAACAAGGAGT
TCGACTTCCTGGGGACGCGGGGGTCGAGGCCTCTAGAGGTCGCCACACTC
CGGTTGCAAAACATGCGCCAGATCGTCACCAAATGGAACAAGCTTTCCCC
GCCCGACAAGGAGCTCATCACGCAGCAGGGAGGGACCGTGGTCTTTGAGG
GCCGGAATGAGATCTACAGCTACAAGGATAAAGTGAGGTTGCTCTTGGCC
TCTTGCCTTTCCCGTGTTCACCAAGATGCAGTGGTGTTCTACTGTACAGC
AGTGCACCCTAAGCTCTGTGCGCGCGCATGCTTTACTGCCCCTCGTCGAG
GGGCGTGA
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