mRNA_C-linearis_contig9.16468.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 673 bits (1737), Expect = 3.670e-230 Identity = 377/552 (68.30%), Postives = 426/552 (77.17%), Query Frame = 3
Query: 1494 RYGEGLVYSFTTDTGVFNTGLNLNLCGMLAILGGPDVMTSAIRTVSLRFNTYNGQRDGLFSSVDITARFTLGGEVLVDTSVQAFSMPYFFDSRPWIVCRAVAMFLFGLMLIRYLVKDLKHAWRELKDGRHRLSISLRKMPITTATVLNLVGDGVFLWNLLLWATAAATASEFERIPTISYNNSSEQVRAFSEDLALVALERWKRDAAAVAGSLFGLARLFIMLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEINDAAAFFIIVTYQTLQGILLLNIVVSILLDGFEQMVHKRNSAIAADTLRQTVMTTLGRWRIRLVGAVFR--------------RGSSLRYSASTSAQVKNPAHTKPGWERRR--------SSSSSAAGPGAVVAGVPFAPPGVPNSVSSAGPPSPTSAATAGTVKWKVDIKSN---ASRKGGLTRGQRLALSHRHYDIRAAVEVLRQSPLPKTAVWRKMRQIVGARFVVVVVSGEGNSGTTEQPGAAWKRGQ 3074
R +GLVYS TTD GVFN+GLN NLCGMLAILGGPDVMT A+R+VSLRFNTYNGQ DGLFS VDITA FTLGGEV + TSV+ FSMP+FF S P IV RA+AMF FGLML+ Y+ KD+ AWRE++DGRHRLS+SLR +P+TTAT LNLVGD VFLWNL+LW A TA++FE IPT+SYNN+SEQVRAFSE+LALVALERWKRDAAAVAGS+FGL RLFIMLRFHPRLSLVTDVLT+S VHLVHFF+MFFMVV VYSNL WVIFGPS LFATWT+SFVTMTRIALGEFDNIYPLMVEI+ AAAF IIVTYQTLQ ILLLNIV+SILLD F QMV KRNS +AADTL QTVMTTLGRWRIRL F RGSS+ A T+ VKNP H + G + R ++ ++A A AGVP APPG+ S S P P+S K KV K+ A+++GGLTRGQRLA+SHRHYD+R AVEVLR+SPLP+ AVWRKMRQI+GAR V G GN+G QPGAAW R Q
Sbjct: 21 REDQGLVYSITTDIGVFNSGLNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQVRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAF-QMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVGRCPSVTRRSSPRGSSVGDDAGTTV-VKNPMHDRHGGRKLRQRHQHTAPTAGGTSAAAVAAAAGVPVAPPGITGSSSRGVPLLPSS------DKRKVSSKNRGGGATKRGGLTRGQRLAMSHRHYDLRTAVEVLRRSPLPEAAVWRKMRQIIGARLGWVS-EGAGNTGKPLQPGAAWGRSQ 563
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: A0A6H5KPV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV8_9PHAE) HSP 1 Score: 170 bits (431), Expect = 4.320e-44 Identity = 124/258 (48.06%), Postives = 144/258 (55.81%), Query Frame = 3
Query: 2382 MVEINDAAAFFIIVTYQTLQGILLLNIVVSILLDGFEQMVHKRNSAIAADTLRQTVMTTLGRWRIRLVGAVF------------------------------------------RRGSSLRYSASTSAQVKNPAHTKPG-WERRRSSSSSAA-------GPGAVVAGVPFAPPGVPNSVSSAGPPSPTSAATAGTVKWKVDIKSN---ASRKGGLTRGQRLALSHRHYDIRAAVEVLRQSPLPKTAVWRKMRQIVGAR 2996
MV+I+ AAF IIVTYQTLQ ILLLNIV+SILLD F QMV R+S +AADTL QTVMTTLGRWRIRL F RR S A T+ V+NP H + G W+ RR +A V GVP APPG+ S S P PTS K KV K+ A+R+GGLT GQRLA+SHRHY++ AAVEVLR+SPLP+ AVWRKMRQI+GAR
Sbjct: 1 MVDIDGGAAFMIIVTYQTLQCILLLNIVISILLDAF-QMVQTRDSVVAADTLWQTVMTTLGRWRIRLTHMGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVHRCSSGTRRSSDRGDDAGTTV-VRNPMHDRHGGWKLRRRHQRTAPTXXXXXXXXXXXVTGVPVAPPGITGSSSRGAPSLPTS------DKRKVSSKNRGGGATRRGGLTGGQRLAMSHRHYELHAAVEVLRRSPLPEAAVWRKMRQIIGAR 250
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.410e-42 Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = 3
Query: 402 KWGWSRTETERLVRVQAVARGWLVRRRVCWIPAKDLEAVLKDVDQRDKGLRRLVAYLCFFLLFFGILILESDVTFQHAVETGITDFINQ 668
+WGWSR+ETERLVR+QAV RGWL+RR+V WIPA+DLEAVLKD+DQRDKGLRRLVAYL FFLLFFGILILESDVTFQH+VETGIT FINQ
Sbjct: 7 RWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 2.700e-17 Identity = 45/111 (40.54%), Postives = 74/111 (66.67%), Query Frame = 3
Query: 2157 MLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEINDAAAFFIIVTYQTLQGILLLNIVVSILLDGF 2489
ML FH R+S+VTD L+ + HL HF +FF+V+ ++ L W++ G S F+T +++ ++TRI+LGE +N YP +++ ++V YQ L +LLLN+V++ILL+ F
Sbjct: 32 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 3.300e-15 Identity = 47/136 (34.56%), Postives = 83/136 (61.03%), Query Frame = 3
Query: 2157 MLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEINDAAAFFIIVTYQTLQGILLLNIVVSILLDGFEQMVHKRNSAIAADTLRQTVMTTLG 2564
ML FH R+S+VTD L+ + HL HF +FF+V+ ++ L W++ G S F+T +++ ++ RI+LGE +N YP +++ ++V YQ L +LLLN+V++ILL+ + + + DT+ Q+ + +G
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGE---DTIFQSFIAFVG 133
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: A0A6U4MJF6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MJF6_HEMAN) HSP 1 Score: 65.9 bits (159), Expect = 4.060e-7 Identity = 78/327 (23.85%), Postives = 151/327 (46.18%), Query Frame = 3
Query: 1620 RTVSLRFNTYNGQRDGLFSSVDITARFTLGGEVLVDTSVQAFSMPYFFDSRPWIVCRAVAMFLFGLMLIRYLVKDLKHAWR--ELK----DGRHRLSI-SLRKMPITTATVLNLVGDGVFLWNLLLWATAAATASEFERIPTISYNNSSEQVRAFSEDLALVALERWKRDAAA--VAGSLFGL-ARLFIMLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEIND---AAAFFIIVTYQTLQGILLLNIVVSILLDGFEQMVHKRNSAIAADTLRQTVMTTL 2561
+TV + T+N +D +F+ ++ F GG++ V++ ++ F S W + V + + ++R + ++ HAW+ +LK D + L S +P + T +L+G V L P + E AF E + V D + + ++ L AR F +L F R+ L+T +++ ++HF M+FF+V+ Y +G ++FG LS + T + +T+ + L ++ Y M++ N+ F++ ++ L I LLNI ++IL+D F + + S+ ++TL ++ L
Sbjct: 317 KTVDVSLLTFNPIKD-VFALCTVSFTFLDGGQIETSVLVKSRALSDFHTSE-WRIFVMVCIIMGSAAILRTELSEIYHAWKSNDLKSYFGDAWNLLDFASFLSIPCSIITY-DLIGQQVLATFPLAVNGTVPYVLRDVNTPARIFRTDPENEIAFLESVTYVRSLMGFLDFYSFWIGFNIMILTARFFKILHFQGRMGLITRTFSTALQDIIHFGMIFFLVIFAYGVMGVLLFGHQLSEYRTMGTAMMTLIQTTLAISNDDYARMLDSNNNIMTTIFYL--SFLFLSTITLLNIFLAILIDAFSTV---KESSSHSETLMSGLLEVL 635
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: A0A7S0TTA5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTA5_HEMAN) HSP 1 Score: 59.7 bits (143), Expect = 1.330e-5 Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 3
Query: 2127 SLFGLARLFIMLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEINDA 2402
+LF + R+ +L F PR++L+T LT +G L+HF ++F +V+ Y+ +G ++FG + F T S V++ I LG D I+ M ++A
Sbjct: 248 TLFFVLRILKILDFQPRMALITSTLTEAGTDLMHFLILFMLVLLAYATMGCILFGGQVVKFQTLGSSMVSLIFILLGWDDLIFGEMTRASNA 339
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Match: A0A8J1UZV7_OWEFU (Ofus.G27132 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UZV7_OWEFU) HSP 1 Score: 58.5 bits (140), Expect = 8.130e-5 Identity = 37/132 (28.03%), Postives = 74/132 (56.06%), Query Frame = 3
Query: 2145 RLFIMLRFHPRLSLVTDVLTSSGVHLVHFFMMFFMVVAVYSNLGWVIFGPSLSLFATWTESFVTMTRIALGEFDNIYPLMVEINDAAAFFIIVTYQTLQGILLLNIVVSILLDGFEQMVHK-RNSAIAADTL 2537
+LF +L F+P++ +++DV +G L+HF +MF +V+ +++ + +G + F+T + +T+ + L EFD+ + +VE + V + I+ LN+++SIL + F H R++A +D L
Sbjct: 1334 KLFKLLNFNPKMRMLSDVFVIAGRPLIHFAIMFAIVLMAFTHFAMMYYGSTFDEFSTGMHTLITLVHMLLAEFDSAH--IVEYSLPMGIIFTVAFLAFVYIMTLNLMLSILDNSFTAGSHSTRDTASVSDIL 1463 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16468.1 >prot_C-linearis_contig9.16468.1 ID=prot_C-linearis_contig9.16468.1|Name=mRNA_C-linearis_contig9.16468.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=934bp MRRMWFSSETPVKPAGQRAVDVRKSSASLRRCGSMSIGNTAFKWGWSRTEback to top mRNA from alignment at C-linearis_contig9:269683..288029+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16468.1 ID=mRNA_C-linearis_contig9.16468.1|Name=mRNA_C-linearis_contig9.16468.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=18347bp|location=Sequence derived from alignment at C-linearis_contig9:269683..288029+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:269683..288029+ >mRNA_C-linearis_contig9.16468.1 ID=mRNA_C-linearis_contig9.16468.1|Name=mRNA_C-linearis_contig9.16468.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5604bp|location=Sequence derived from alignment at C-linearis_contig9:269683..288029+ (Chordaria linearis ClinC8C monoicous)back to top |