mRNA_C-linearis_contig89.16445.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16445.1
Unique NamemRNA_C-linearis_contig89.16445.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:692514..692828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.1701534-CDS-C-linearis_contig89:692513..6928131622930690.1701534-CDS-C-linearis_contig89:692513..692813Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 692514..692813 +
1690881198.5624757-CDS-C-linearis_contig89:692513..6928131690881198.5624757-CDS-C-linearis_contig89:692513..692813Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 692514..692813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.1927557-UTR-C-linearis_contig89:692813..6928281622930690.1927557-UTR-C-linearis_contig89:692813..692828Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 692814..692828 +
1690881198.574072-UTR-C-linearis_contig89:692813..6928281690881198.574072-UTR-C-linearis_contig89:692813..692828Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 692814..692828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16445.1prot_C-linearis_contig89.16445.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 692514..692813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16445.1

>prot_C-linearis_contig89.16445.1 ID=prot_C-linearis_contig89.16445.1|Name=mRNA_C-linearis_contig89.16445.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
SHEGCSRSTTGWQISFPLSNWWHQCQGATALPKSLCVCVCVCVWFPAWPK
CGGRRSPEASKEDSFCTFKIICMRVCPERCGTFYLEENGELAWEVLRPQ*
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mRNA from alignment at C-linearis_contig89:692514..692828+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16445.1 ID=mRNA_C-linearis_contig89.16445.1|Name=mRNA_C-linearis_contig89.16445.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig89:692514..692828+ (Chordaria linearis ClinC8C monoicous)
TCGCACGAAGGTTGCTCACGATCAACTACAGGGTGGCAGATTTCCTTTCC
GCTTAGCAACTGGTGGCATCAATGCCAAGGTGCAACCGCGCTACCAAAGA
GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTCCCTGCCTGGCCGAAA
TGCGGCGGACGTCGGAGTCCGGAAGCTTCCAAAGAAGATTCGTTTTGTAC
TTTCAAGATTATATGTATGCGTGTGTGTCCTGAGCGCTGCGGGACATTCT
ATTTGGAAGAAAATGGGGAATTAGCATGGGAGGTATTGCGCCCACAGTAG
TGCACATGGGACGGG
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Coding sequence (CDS) from alignment at C-linearis_contig89:692514..692828+

>mRNA_C-linearis_contig89.16445.1 ID=mRNA_C-linearis_contig89.16445.1|Name=mRNA_C-linearis_contig89.16445.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig89:692514..692828+ (Chordaria linearis ClinC8C monoicous)
TCGCACGAAGGTTGCTCACGATCAACTACAGGGTGGCAGATTTCCTTTCC
GCTTAGCAACTGGTGGCATCAATGCCAAGGTGCAACCGCGCTACCAAAGA
GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTCCCTGCCTGGCCGAAA
TGCGGCGGACGTCGGAGTCCGGAAGCTTCCAAAGAAGATTCGTTTTGTAC
TTTCAAGATTATATGTATGCGTGTGTGTCCTGAGCGCTGCGGGACATTCT
ATTTGGAAGAAAATGGGGAATTAGCATGGGAGGTATTGCGCCCACAGTAG
TCGCACGAAGGTTGCTCACGATCAACTACAGGGTGGCAGATTTCCTTTCC
GCTTAGCAACTGGTGGCATCAATGCCAAGGTGCAACCGCGCTACCAAAGA
GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTCCCTGCCTGGCCGAAA
TGCGGCGGACGTCGGAGTCCGGAAGCTTCCAAAGAAGATTCGTTTTGTAC
TTTCAAGATTATATGTATGCGTGTGTGTCCTGAGCGCTGCGGGACATTCT
ATTTGGAAGAAAATGGGGAATTAGCATGGGAGGTATTGCGCCCACAGTAG
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