mRNA_C-linearis_contig89.16430.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16430.1
Unique NamemRNA_C-linearis_contig89.16430.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: D7FVA9_ECTSI (5'-deoxynucleotidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA9_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 9.270e-110
Identity = 173/203 (85.22%), Postives = 183/203 (90.15%), Query Frame = 1 
Query:  151 MSAAGQGAKGDHQVRAQAPSPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARRQE 759
            MSAAG G   D  V      P++ALSF+RVVGKLKELKRTGWVHRGV KPESVSDHMYRMA+CSFLITDP LDRSRIMKLA+VHDLAEAL GDIAPFQ+VSKE+KRRLEEEGL KICATIG DPIALEIK+LWYEYEDCTSEEARVVKDLDK+EMIVQADDYE+GQGLDL EFFEST GCFTTPQVQSWDKELREQR ARRQE
Sbjct:    1 MSAAGHGT--DMNVL-----PASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQVQSWDKELREQRAARRQE 196
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: W7U169_9STRA (5'-deoxynucleotidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U169_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.670e-67
Identity = 126/217 (58.06%), Postives = 150/217 (69.12%), Query Frame = 1 
Query:  118 RRFLFTTATSAMSAAGQGAKGDHQ----VRAQAPSPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPKLDRSRIMKLAVVHDLAEALVGDIAPFQE-VSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQ-GLDLSEFFESTNGCFTTPQVQSWDKELREQRTAR 750
            R FLF  ++S   A  +    D           PS S AL FLRVVGKLK LKRTGWV+  V  PESV+DHMYRMA+CSFLITDP LDR+R+MKLAVVHDLAEALVGDI P  E  +KE KR LEE+ +  I   +G + I+ EI  LW EYED ++ EARVVKD DK EMI+QAD+YER Q G +L +FF+ST   F  PQV+ WD ELR+QR A+
Sbjct:   21 RSFLFGASSSPTGAPHRVVASDMSSQLATNVSPPSASQALDFLRVVGKLKTLKRTGWVNNKVALPESVADHMYRMAMCSFLITDPALDRTRLMKLAVVHDLAEALVGDIVPHDERYTKELKRTLEEDAIRSIAGDLGHEGISAEIMSLWLEYEDQSTPEARVVKDFDKFEMILQADEYERSQPGQNLEDFFQSTANAFQHPQVREWDAELRKQRDAK 237
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A7S3XU85_HETAK (5'-deoxynucleotidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU85_HETAK)

HSP 1 Score: 221 bits (564), Expect = 7.390e-66
Identity = 123/218 (56.42%), Postives = 149/218 (68.35%), Query Frame = 1 
Query:  151 MSAAGQGAKGDHQVRAQAPSPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARRQESTAPAGGASQTAPGE 804
            M AA Q   G       A   + ++ F R+VG+LK+LKRTGWV RGVD PESVSDHMYRM++CSFL++DP +DR    K+A+VHDLAEAL GDI P   VS+ EKRR EE  L  I  T+    I  EI++LW EYE  ++ EA  VKDLDK EMI+QAD+YERGQ  DLSEFF+ST G F T QVQ WD+ELR QR AR Q+     GG ++  PGE
Sbjct:   30 MLAANQSGDGSRSALTDA---AKSIEFFRIVGQLKKLKRTGWVKRGVDLPESVSDHMYRMSMCSFLLSDPAVDRMWCTKMALVHDLAEALAGDITPHCGVSEAEKRRREEAALDNILETVPSPEIGNEIRELWLEYESGSTPEAIFVKDLDKFEMILQADEYERGQNKDLSEFFKSTEGYFKTQQVQQWDQELRAQRAARLQK----RGGETEEGPGE 240
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A7S1TPL2_9STRA (5'-deoxynucleotidase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPL2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.970e-65
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 1 
Query:  211 PSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARR 753
            PS  L FLRVVG LK  KRTGWVHRGVD PESV+DH YRMA+C+FL      DR+R+MKLAVVHDLAE+LVGDIAP Q+VS E+K R+E E + +I ++IG + IA EI  L+ +YE+  + EA++VK++DK EMIVQAD+YER QG +L EFF+ST   F TP + SW+ ELR QR ARR
Sbjct:   14 PSKVLDFLRVVGGLKRTKRTGWVHRGVDDPESVADHSYRMAMCAFLADGDAYDRNRVMKLAVVHDLAESLVGDIAPHQKVSNEDKARMELEAMERITSSIGHEAIAAEILDLFTDYEEQRTPEAQLVKEIDKFEMIVQADEYEREQGKELQEFFDSTAASFQTPMMASWNAELRRQRDARR 194
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A8K1FQK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQK2_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 2.750e-64
Identity = 107/180 (59.44%), Postives = 138/180 (76.67%), Query Frame = 1 
Query:  217 NALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITD--PKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTAR 750
            NA+ FLR+ G+LK+LKRTGWV+  V  PESV+DHMYRM +C  LI +  P ++RS+ +K+A+VHDLAE+LVGDI P   V+ E+K R+E+E L +ICAT+G  P A EIK+LW+EYE  TSEEAR+VKD DK EMI+QAD+YER Q + L +FF+ST G F TP V+SW  EL +QR AR
Sbjct:   11 NAIEFLRICGRLKQLKRTGWVNHKVHLPESVADHMYRMGMCCLLIDEVNPSVNRSKCIKMAIVHDLAESLVGDITPHDGVADEDKHRMEKEALEQICATLGDSPAATEIKELWHEYEAGTSEEARMVKDFDKFEMILQADEYERAQNIPLDDFFQSTQGKFRTPLVRSWVDELIQQREAR 190
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: H3GV42_PHYRM (5'-deoxynucleotidase n=26 Tax=Phytophthora TaxID=4783 RepID=H3GV42_PHYRM)

HSP 1 Score: 205 bits (522), Expect = 1.590e-60
Identity = 107/188 (56.91%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:  217 NALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPK--LDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARRQESTAPA 774
            +A+ FLR+ G+LK LKRTGWV+  V  PESV+DHMYRM +C  L+ D    ++RS+ +K+A+VHDLAE+LVGDI P   V++E+K R+E+E L +IC T+G  P A EI+ LW EYE  ++EEA++VKD DK EMI+QADDYER Q + L +FF+ST G F TP VQSW  EL  QRTAR  ES  PA
Sbjct:   11 SAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMGMCCMLLDDANETVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICGTLGDTPSAAEIRSLWNEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLDDFFQSTKGKFRTPLVQSWVAELTSQRTARL-ESKVPA 197
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A1W0A6A0_9STRA (5'-deoxynucleotidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6A0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.680e-60
Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1 
Query:  208 SPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLI-TDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIG-QDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARRQES 762
            S S+AL FLRV G LK LKRTGWV+  V+ PESV++HMYR+A+CS L+  D  +DR + MK+A+VHDLAEA VGDI P   VS E+K ++E++ + +IC  +G +   A EI++LW+EYE+ ++EEA++VKD DK EMI+QAD+YE  QG+DL +FF ST G F TP VQSW  EL  QR  R+  S
Sbjct:    7 SASSALEFLRVCGALKRLKRTGWVNHKVESPESVAEHMYRLAMCSLLLDNDSSVDRMKCMKMAIVHDLAEAFVGDITPHDGVSDEDKHKMEKDAIDEICTKLGAESEAAKEIRELWHEYENASTEEAKMVKDFDKFEMILQADEYENAQGVDLQDFFNSTKGKFKTPLVQSWVSELNAQRDTRKSNS 193
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A6G0XIE9_9STRA (5'-deoxynucleotidase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIE9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.680e-60
Identity = 103/181 (56.91%), Postives = 135/181 (74.59%), Query Frame = 1 
Query:  214 SNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLIT-DPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARR 753
            ++A+ FLR+ G+LK LKRTGWV+  V+ PESV+DHMYRMA+C+ L+  D  LDR+R +K+A+VHDLAE+ VGDI P   VS EEK RLE+  +  ICA +G    A+EIK+LW EYED +++EA++VKD DK EMI+QAD+YE  Q ++L +FF ST G F TP VQSW  EL  QR AR+
Sbjct:    9 TSAVEFLRICGQLKRLKRTGWVNHKVNAPESVADHMYRMAMCTMLLDGDSSLDRTRCIKMAIVHDLAESYVGDITPHDGVSNEEKHRLEKNAIDDICAKLGPSQAAVEIKELWQEYEDASTDEAKMVKDFDKFEMILQADEYESVQDVNLDQFFTSTEGKFKTPLVQSWVAELNAQRHARK 189
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: A0A3R7K1B0_9STRA (5'-deoxynucleotidase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1B0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.570e-59
Identity = 101/180 (56.11%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:  217 NALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLITDPK--LDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTAR 750
            NA+ FLR+ G+LK LKRTGWV+  V  PESV+DHMYRM++C  L+ D    ++RS+ +K+A+VHDLAE+LVGDI P   V++E+K R+E+E L +IC+ +G  P A EI++LW EYE  ++EEA++VKD DK EMI+QADDYER Q + L +FF+ST   F TP VQSW +EL  QR AR
Sbjct:   11 NAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDDNKAVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICSKLGDTPSAAEIRELWAEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLGDFFQSTKDKFRTPLVQSWVEELTTQRNAR 190
[Close]
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Match: T0PSL2_SAPDV (5'-deoxynucleotidase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0PSL2_SAPDV)

HSP 1 Score: 201 bits (512), Expect = 4.150e-59
Identity = 103/184 (55.98%), Postives = 135/184 (73.37%), Query Frame = 1 
Query:  208 SPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALCSFLI-TDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGLAKICATIG-QDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYERGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARR 753
            S S+AL FLRV G+LK LKRTGWV+  V  PESVSDHMYR+A+CS L+  D  +DR + +K+A+VHDLAEA VGDI P   VS E+K +LE + + +IC  +G +   A EI+ LW+EYE+ +++EA++VKD DK EMI+QAD+YE  Q +DL +FF ST G F TP VQSW +EL  QR AR+
Sbjct:    7 SASSALDFLRVCGQLKRLKRTGWVNHQVHAPESVSDHMYRLAMCSLLLDNDSSVDRMKCIKMAIVHDLAEAFVGDITPHDGVSDEDKHKLERDAIDEICTKLGAESQAAKEIRDLWFEYENASTDEAKMVKDFDKFEMILQADEYESVQAVDLQDFFNSTQGKFKTPLVQSWVQELNTQRDARK 190
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA9_ECTSI9.270e-11085.225'-deoxynucleotidase n=2 Tax=Ectocarpus TaxID=2879... [more]
W7U169_9STRA2.670e-6758.065'-deoxynucleotidase n=1 Tax=Nannochloropsis gadit... [more]
A0A7S3XU85_HETAK7.390e-6656.425'-deoxynucleotidase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TPL2_9STRA1.970e-6561.335'-deoxynucleotidase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8K1FQK2_PYTOL2.750e-6459.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GV42_PHYRM1.590e-6056.915'-deoxynucleotidase n=26 Tax=Phytophthora TaxID=4... [more]
A0A1W0A6A0_9STRA2.680e-6055.085'-deoxynucleotidase n=1 Tax=Thraustotheca clavata... [more]
A0A6G0XIE9_9STRA2.680e-6056.915'-deoxynucleotidase n=1 Tax=Aphanomyces euteiches... [more]
A0A3R7K1B0_9STRA3.570e-5956.115'-deoxynucleotidase n=3 Tax=Phytophthora kernovia... [more]
T0PSL2_SAPDV4.150e-5955.985'-deoxynucleotidase n=2 Tax=Saprolegniaceae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:592923..596952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.7
Seed ortholog evalue1e-89
Seed eggNOG ortholog2880.D7FVA9
Preferred nameHDDC2
KEGG rclassRC00002
KEGG koko:K07023,ko:K07198,ko:K13800,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map00240,map00983,map01100,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
KEGG ModuleM00052
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019199,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030431,GO:0032501,GO:0036211,GO:0038023,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.HD domain
EggNOG OGsCOG1896@1,KOG3197@2759
Ec32 ortholog descriptionHD domain
Ec32 orthologEc-14_000400.1
EC2.7.11.11,2.7.4.14
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029,ko04131
Exons7
Model size1387
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.2402945-UTR-C-linearis_contig89:592922..5929611622930697.2402945-UTR-C-linearis_contig89:592922..592961Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 592923..592961 +
1690881202.6352103-UTR-C-linearis_contig89:592922..5929611690881202.6352103-UTR-C-linearis_contig89:592922..592961Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 592923..592961 +
1622930697.3775868-UTR-C-linearis_contig89:596417..5969521622930697.3775868-UTR-C-linearis_contig89:596417..596952Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 596418..596952 +
1690881202.736037-UTR-C-linearis_contig89:596417..5969521690881202.736037-UTR-C-linearis_contig89:596417..596952Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 596418..596952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.260073-CDS-C-linearis_contig89:592961..5930911622930697.260073-CDS-C-linearis_contig89:592961..593091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 592962..593091 +
1690881202.6499553-CDS-C-linearis_contig89:592961..5930911690881202.6499553-CDS-C-linearis_contig89:592961..593091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 592962..593091 +
1622930697.2788863-CDS-C-linearis_contig89:593319..5934521622930697.2788863-CDS-C-linearis_contig89:593319..593452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 593320..593452 +
1690881202.660106-CDS-C-linearis_contig89:593319..5934521690881202.660106-CDS-C-linearis_contig89:593319..593452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 593320..593452 +
1622930697.2944655-CDS-C-linearis_contig89:593944..5940131622930697.2944655-CDS-C-linearis_contig89:593944..594013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 593945..594013 +
1690881202.671098-CDS-C-linearis_contig89:593944..5940131690881202.671098-CDS-C-linearis_contig89:593944..594013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 593945..594013 +
1622930697.3072584-CDS-C-linearis_contig89:594400..5945551622930697.3072584-CDS-C-linearis_contig89:594400..594555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 594401..594555 +
1690881202.6816943-CDS-C-linearis_contig89:594400..5945551690881202.6816943-CDS-C-linearis_contig89:594400..594555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 594401..594555 +
1622930697.3242803-CDS-C-linearis_contig89:595176..5952931622930697.3242803-CDS-C-linearis_contig89:595176..595293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 595177..595293 +
1690881202.6929333-CDS-C-linearis_contig89:595176..5952931690881202.6929333-CDS-C-linearis_contig89:595176..595293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 595177..595293 +
1622930697.3408477-CDS-C-linearis_contig89:595811..5958731622930697.3408477-CDS-C-linearis_contig89:595811..595873Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 595812..595873 +
1690881202.7129643-CDS-C-linearis_contig89:595811..5958731690881202.7129643-CDS-C-linearis_contig89:595811..595873Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 595812..595873 +
1622930697.3606045-CDS-C-linearis_contig89:596270..5964171622930697.3606045-CDS-C-linearis_contig89:596270..596417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 596271..596417 +
1690881202.723986-CDS-C-linearis_contig89:596270..5964171690881202.723986-CDS-C-linearis_contig89:596270..596417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 596271..596417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16430.1prot_C-linearis_contig89.16430.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 592962..596417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16430.1

>prot_C-linearis_contig89.16430.1 ID=prot_C-linearis_contig89.16430.1|Name=mRNA_C-linearis_contig89.16430.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=271bp
MFYRLCLIAPALASAHALIPCKAFPHRRFLFTTATSAMSAAGQGAKGDHQ
VRAQAPSPSNALSFLRVVGKLKELKRTGWVHRGVDKPESVSDHMYRMALC
SFLITDPKLDRSRIMKLAVVHDLAEALVGDIAPFQEVSKEEKRRLEEEGL
AKICATIGQDPIALEIKQLWYEYEDCTSEEARVVKDLDKMEMIVQADDYE
RGQGLDLSEFFESTNGCFTTPQVQSWDKELREQRTARRQESTAPAGGASQ
TAPGETENPGGTIQEGADTP*
back to top

mRNA from alignment at C-linearis_contig89:592923..596952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16430.1 ID=mRNA_C-linearis_contig89.16430.1|Name=mRNA_C-linearis_contig89.16430.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4030bp|location=Sequence derived from alignment at C-linearis_contig89:592923..596952+ (Chordaria linearis ClinC8C monoicous)
GTGTGTTGCTGTGCTGCAGGCTGTGTGACTACTGGCTGCATGTTCTACCG
CTTGTGCCTGATAGCACCAGCCCTCGCGTCAGCACACGCATTGATCCCTT
GCAAGGCATTTCCTCATCGTCGATTCCTGTTTACCACCGCCACATCAGCC
ATGTCCGCAGCTGGACAAGGTGAAACTCCGAAGTTGTGTTTCAAAACTTG
CGTTGAGAACTCCGCCGTCTCGTGTAGGGTATGTACAATACAGCAGGTTC
GTTGGCCCTCCTCTTGCCACCGGCCGATGCACACCACTACTTCACCTTAG
CATCACTGCGCACCGCCCTGCCGCTCTGCTAGCACGCCTTACAGATGCCC
AAAAACAAACACGCCCTGGCTGGCGGATTATCTGAAAACAATGGCAGGCG
CCAAGGGGGATCATCAAGTGAGAGCTCAAGCTCCTTCGCCCTCGAACGCA
TTGTCGTTCCTGAGAGTTGTGGGCAAGCTGAAGGAGCTCAAGAGGACAGG
CTGGGTTCATCGCGGGGTCGACAAGCCAGAGTGAGTATTTTCCTTCTGCT
TGAATCGTCAAAGAGTGTTGTCGAACTTGAAATATACACACACCTAGTCT
ACCGGTGCCAGCTCGCTCGTGGCGAGCGCATGTGCATGTACGTAGCACCA
ACATGTGTGTGTGTCTACTAACCTAGGGACGGTATGAAAGCCCCAACGCA
GCCGAAACATGTAATGTAGATCTCCTGTTCAAGACCATTGCAGGCACTGT
AGTATATATACCCCACCGGTTGCCTTATGATGCCTTACATCGCAGTAGGT
GCAGGAGGTGTTCGACGTTGACGCTCTCAGGTTTGAGTGCTCTCTCTAGC
CGCGCGATTTCTGGCCCAGATGTACAGATCTACTGCTGAAAGGGGATGGA
CGAACGATGCATCGGCGTTGATGTTCGCTTGCTCACTTGCTGCAGCATAG
TCAAACCCCGTGTGCACGTGTTGCTCCCTCATGTGCCAACCGGTTTTGTT
GTTCCGTCTGATCCCGAACCAGGTCAGTTTCGGATCACATGTACCGGATG
GCTCTGTGCTCCTTCCTAATCACAGACCCGAAGCTGGATCGGTGAGCCGA
CTTCCTCTTTTCGTTTTTCGAATCAACTCAAAACGCTGTTGGTTCGCTGT
TCACCAGAAAGGTACATCATCATCAGTACGGCGGCGTCATGTCGTCCGCT
CAGCTGGTCGAAGCGCTAAAAGCGGTTGCAACAGATGGAGCGTTATGTGT
CGGTGTGTTGTTTTTGACAGCCATGGTGTTGCTCCCTGCTGTTGGCCAAG
CAGGTGCGACTTCCAACAGTCTTTAAAAAAAAAATCGTGGCGGCGTATCT
CGTGCTCCGTGTCATTTGATGTTCAAACGCGAGGGCTCCTCTCCCTCTCT
CTCTCCATCCCTTTGGAACACATACATGCACGTTGGATGTTTGATTGTCC
GCCTAAATTATCGCTTATCATTCAACAGGTCGCGTATCATGAAGCTCGCG
GTGGTGCACGATCTCGCGGAAGCCTTGGTCGGAGACATCGCCCCGTTCCA
GGAGGTGTCCAAGGAAGAAAAGCGGCGGCTGGAGGAGGAAGGGCTGGCCA
AGATATGCGCCACAATCGGCCAAGATCCCATCGGTGCGTGTCGCAAAAGG
GACCGCCTACGCACGAAATTAAGAGTATCTACGAAATAGAACAGGGAGGG
GGTACGCAGACCCTAACCCTAACCCTAACCCTAACCCCAAAGCACGGATT
CTATACTTTATCCCATACGTTTTCTGAAGGAGAAAAAGCTGCGAAGGCTA
CTGCGCAAAAGAAGAAAACAACGGCTCCTCTGGTGTAGTGGAAGATGGTG
CACACTATATCTGCTGCGGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTTCATCCCATTCTTTGGGCGTCTGGCGTCTGG
CGTCATTGGATGGTCGGTGCATTAATTTGGACTGCTTTCATTGAAAAAAA
CCATGGCTGTGGGCTCTACGACGCATACTGTATGTAGTTGATGGAAGGTT
TGGGGCCGCCCCAAGCTTGCACCAATCGACATCAGACTATGGACTGCTTG
CCCCTTGAGTGGGACGTCACTTTTCTTCACGCAGTGCGACCGCCTACAAC
AACATCCCGAGTGGTGTGGAAGGAAATTGTAATTTGCTGTTTTGCCAGCA
AGAGACGAGACGTTCGGTGATGGTTGTCGCTCGCTGCTTCCCGCGGTTCG
GTAGCGCTCGAGATCAAGCAGCTGTGGTACGAGTACGAAGACTGTACGTC
GGAGGAGGCTCGCGTGGTGAAAGACTTGGATAAGATGGAGATGATCGTGC
AGGCAGATGACTATGAAAGAGGTGATCCGGGACTGAAGATTTCCTCTAGC
TCTCCCTCGTCATCTCTTCGATCCACCTCTCTCTGCATCGTGTAGGGATC
ACGTATTGCTACCATGCATTGCACTGCTGTTGTACTGTATTTTTGGTTGC
GAAGCATGAACGTGCCACTTCCGCTTTGCCTATTGCTACATAGCCATCCA
GAAATACGCAATTTAGAAACAAGAGCACTAGATTTGAACACATGGATCTC
ATAATTCTTACGACTGCCACCAAACATGCTACCGGTGCGGCAGGTGATTG
TCCAGTCCGCATGCGCAGAAATTTCTCAAACCACCAATGGTCGTATGGCC
TGCGTGAATGTGTTCCGTTTGGCGTGGGCGGTACTCGAGTTATTCTTCCG
GAATATGACGCATGCCGCATATCGCTATCACGGGCTGAGCAGAACACCCC
TCTCATCTCGTGTCACAGCTCTCCTCACCGCAATTGGCTTTCGTTTCTTT
GCACCGGCCTTTCTGGTGGTGATCATGGGGATCAAGCAGGTCAGGGCCTC
GACCTGAGTGAGTTTTTCGAGAGCACGAACGGGTGCTTCACCACGCCTCA
GGTAGCGTCTCTCCCAAACCTGTGCTGCTACAGCAGTGCCAAACACTAGG
CCCCTGTATCGTACGGGATACAGTTTCGTCCCAGATGTTCCGGCTCTGGT
ACTCAAATGACGAATGTACAAATGGACGAGTTAAGGACACTACCAACGCC
AGGTAGCGCTGCTTGCTTTTTGGTTGCTGCTTTGTTGACTTGTTCACGAC
TGATTCGTAGCACACCGGAAGGTTTCTGATACACACGTATTTGATGTCCC
TAGAAACGTTGCACGCACGCCACTTCAGATCCCCAAGTATTTTGCGCTCT
CAGGCATCGTTCGTGTGGACTGCTTATTGTTGGGAGTCTCGCATGCATGT
TTTTATCAAAAGTACCTGCGTGCGTGTGTCGTATTCTCGGTCCCACAGGT
GCAGTCGTGGGACAAGGAGCTTAGGGAACAAAGGACGGCCCGTCGACAAG
AATCGACAGCACCGGCGGGGGGCGCATCACAGACCGCACCGGGGGAAACG
GAAAACCCGGGGGGCACAATACAAGAAGGCGCCGATACCCCGTAAAACTC
GAAGAATGTGCTGGGAGAAGTCCGGGTAGAGCTGACGAGTGTTGCAGTAC
TTCCTTGCAGGTGCTTCGAACGTGGTTTTTATGGACCGTACTTCAACGAC
TTTAGTTGCGGTTTGTAAACGCGAAGAAAATATTGCGGGGTGGTTATACT
CCGATGGCGTCTTCAAGTGCTGAAGGTCCTGGCGCTTTGGGAAGCCGAAC
CAGCTGCGGGCCGTGGGGATTCGAGAGAGACCGAGCAAACAGCAGCAGTG
CCGCGTGATGTCCTGTAAAGCGGGGAAATGAGAAAGGAACGGCGGAGGCG
GCTTCAAGCTAAGCGTTGCTCTCCATGTAGACCCTGGAAAATCTTGTGCG
CTTCGAAAGGACACAGCCCCGACCGACAAGCAGGTGTTCAAACGCAAGAA
CTCTGCGTTGCAGAAAGGTGGCAGAAAGTACCATTTTTTTCATTTTTTTT
GAAAGTGCGCCCAGATGTAGTGGGGGCAGCGCTAGAGGCTGCGCTCGTAA
TACGACAAAAACAACAATATCAGTTCTCGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig89:592923..596952+

>mRNA_C-linearis_contig89.16430.1 ID=mRNA_C-linearis_contig89.16430.1|Name=mRNA_C-linearis_contig89.16430.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at C-linearis_contig89:592923..596952+ (Chordaria linearis ClinC8C monoicous)
ATGTTCTACCGCTTGTGCCTGATAGCACCAGCCCTCGCGTCAGCACACGC
ATTGATCCCTTGCAAGGCATTTCCTCATCGTCGATTCCTGTTTACCACCG
CCACATCAGCCATGTCCGCAGCTGGACAAGATGTTCTACCGCTTGTGCCT
GATAGCACCAGCCCTCGCGTCAGCACACGCATTGATCCCTTGCAAGGCAT
TTCCTCATCGTCGATTCCTGTTTACCACCGCCACATCAGCCATGTCCGCA
GCTGGACAAGGCGCCAAGGGGGATCATCAAGTGAGAGCTCAAGCTCCTTC
GCCCTCGAACGCATTGTCGTTCCTGAGAGTTGTGGGCAAGCTGAAGGAGC
TCAAGAGGACAGGCTGGGTTCATCGCGGGGTCGACAAGCCAGAGCGCCAA
GGGGGATCATCAAGTGAGAGCTCAAGCTCCTTCGCCCTCGAACGCATTGT
CGTTCCTGAGAGTTGTGGGCAAGCTGAAGGAGCTCAAGAGGACAGGCTGG
GTTCATCGCGGGGTCGACAAGCCAGAGTCAGTTTCGGATCACATGTACCG
GATGGCTCTGTGCTCCTTCCTAATCACAGACCCGAAGCTGGATCGGTCAG
TTTCGGATCACATGTACCGGATGGCTCTGTGCTCCTTCCTAATCACAGAC
CCGAAGCTGGATCGGTCGCGTATCATGAAGCTCGCGGTGGTGCACGATCT
CGCGGAAGCCTTGGTCGGAGACATCGCCCCGTTCCAGGAGGTGTCCAAGG
AAGAAAAGCGGCGGCTGGAGGAGGAAGGGCTGGCCAAGATATGCGCCACA
ATCGGCCAAGATCCCATCGGTCGCGTATCATGAAGCTCGCGGTGGTGCAC
GATCTCGCGGAAGCCTTGGTCGGAGACATCGCCCCGTTCCAGGAGGTGTC
CAAGGAAGAAAAGCGGCGGCTGGAGGAGGAAGGGCTGGCCAAGATATGCG
CCACAATCGGCCAAGATCCCATCGCGCTCGAGATCAAGCAGCTGTGGTAC
GAGTACGAAGACTGTACGTCGGAGGAGGCTCGCGTGGTGAAAGACTTGGA
TAAGATGGAGATGATCGTGCAGGCAGATGACTATGAAAGAGCGCTCGAGA
TCAAGCAGCTGTGGTACGAGTACGAAGACTGTACGTCGGAGGAGGCTCGC
GTGGTGAAAGACTTGGATAAGATGGAGATGATCGTGCAGGCAGATGACTA
TGAAAGAGGTCAGGGCCTCGACCTGAGTGAGTTTTTCGAGAGCACGAACG
GGTGCTTCACCACGCCTCAGGTCAGGGCCTCGACCTGAGTGAGTTTTTCG
AGAGCACGAACGGGTGCTTCACCACGCCTCAGGTGCAGTCGTGGGACAAG
GAGCTTAGGGAACAAAGGACGGCCCGTCGACAAGAATCGACAGCACCGGC
GGGGGGCGCATCACAGACCGCACCGGGGGAAACGGAAAACCCGGGGGGCA
CAATACAAGAAGGCGCCGATACCCCGTAAGTGCAGTCGTGGGACAAGGAG
CTTAGGGAACAAAGGACGGCCCGTCGACAAGAATCGACAGCACCGGCGGG
GGGCGCATCACAGACCGCACCGGGGGAAACGGAAAACCCGGGGGGCACAA
TACAAGAAGGCGCCGATACCCCGTAA
back to top