mRNA_C-linearis_contig89.16422.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16422.1
Unique NamemRNA_C-linearis_contig89.16422.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 845 bits (2182), Expect = 4.520e-294
Identity = 508/767 (66.23%), Postives = 565/767 (73.66%), Query Frame = 3
Query:  117 MDHVASQVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGI-SAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLP--------------SGAGTAQPKSATTATSGDA--------------SASALAVERPAALKRSVSQPIERGRGR-AAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVG--AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPR----------SGDGGRFTPAMVEQEASEHENVDEFISALEARVSMKRPF 2288
            MDHVASQVGVINAMRTGNVVLDMMIAMSIPL LQGL+KFWEWLRP IE+FLF+LR  +EHF RTIE+EKVS+ WG ED   EG RNNILQKA+SLY+GQLGLKY  A+VVL SVKEKG RDEDSY+MVYGGTAEQLKAYRVG TPP+NNWVEVED V+FQQ+TGV+EEG  +   ++TKD+K+KT++ F+C+ RDGD RI+ F+QKAF WYCEEM+STED GRYLYTLI+     S+ G D+ +GP+RKYKRYRLSDGKDF SLFFPEK+ALLR+L+HFE+KS GKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPL +IKTNQELMDIVFDQ+F V GEELPVT+GFEN+IFVMEDVDAASPIV SR+RSK K                      K                    G  TA+PKS+T+ T GD               +A+ LA+ RP  L+RSVSQP ER +   A +TRKVTLFERCT                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX   D  VCGP+    G    XXX                XXXXXXXXXXSK+ SK+DKLDLAGLLNVLDGVVDTP RIVIMTTNHPETLDAALIRPGRIDKKIYLGYM+Y AALEMT+HYFQV KL+PEQDRRLREIFK YP   KTRG  R           GDGGRFTPAMVEQEASEHE+VD FI+ALEARVS KRPF
Sbjct:    1 MDHVASQVGVINAMRTGNVVLDMMIAMSIPLVLQGLYKFWEWLRPLIEEFLFSLRARDEHFSRTIEYEKVSNIWGYEDEGVEGHRNNILQKAVSLYIGQLGLKYGHAMVVLGSVKEKGKRDEDSYDMVYGGTAEQLKAYRVGVTPPQNNWVEVEDAVYFQQVTGVQEEGGSDKKNSSTKDVKKKTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKS-GKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLGRIKTNQELMDIVFDQRFAVVGEELPVTLGFENVIFVMEDVDAASPIVKSRERSKRKKRGTKTTVKVTQQVTTPHPVTTKXXXXXXXXXXXXXXXXXXXEGPTTAEPKSSTSETPGDEKNPAAVAADATATPAANTLALSRPVMLQRSVSQPTEREKNSMATSTRKVTLFERCTTTTMESLHSSSSNEDIVGDHPSKAAGACPGSNKSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDDRGVCGPLRQTGGDSDDXXXAMMLALARSLGDDSKKXXXXXXXXXXSKFASKSDKLDLAGLLNVLDGVVDTPGRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMKYPAALEMTLHYFQVDKLEPEQDRRLREIFKNYPEPAKTRGSSRCGGGSGRVAGGGDGGRFTPAMVEQEASEHESVDGFIAALEARVSTKRPF 766          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A7R9U422_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U422_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 2.200e-120
Identity = 284/710 (40.00%), Postives = 373/710 (52.54%), Query Frame = 3
Query:  189 IAMSIPLALQGLFKFWEWLRPRIEDFLFNLR--RIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEE--GDPESGKNATKDLKR-----KTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPVG-EELPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKE-YPTTPKTRGGPRSGDGGRFTPAMVEQEASEHENVDEFISALEARVSMKRP 2285
            IAM++P+    L    +++ P   + +  L   R  +++ R I  EK+++ WG+E    + QRNNILQKAISLY+ ++ ++Y  A + L ++KEKG RD++S+ M YG TA+QLKAY+V T P EN W+E+++ +FF + T   +E  GDP  G     D +R     K  F F+ A  +GD  I ++I+KAF WY +EME  +D+ RY+Y L +    S    D  D   RKYKRY+LS+ K FS+LFFPEKE LL+++EHF+ K+ GKY I+GYPHKLGLLLHGPPGTGKTS+IKA+A HT RN+V+V L++IKTNQELMDIVFDQ F VG E++PV + F++IIFVMED+DAAS IV  R+     XXXXXXXXXXXXXXXXXXXX                                                E+    A    +VT  +  T                                                                    M   G  G G                                 S   S+ DKLDL+GLLNVLDGVVD P RIVIMTTNHPE LD ALIRPGR+DK + L Y++ E   EM  HYF +   D EQ  +L+E+F +  P                FTPA +EQ  +EHE +D+FI AL A++    P
Sbjct:   46 IAMTVPMFFSTLSMILQYMTPYAMNVITRLLTPRPPDYYHREIVFEKITTHWGSEVHGRD-QRNNILQKAISLYLNEITVQYRDAKLNLVALKEKGTRDQESWTMQYGTTADQLKAYKVTTVPQENQWIEIDEGLFFMKGTDNHDEDRGDPNKGSMNNGDNRREYNKEKICFHFRTALPNGDEVINAWIEKAFEWYVDEMEKLQDNSRYMYVL-APDATSLSNNDSQDDNQRKYKRYKLSEEKTFSALFFPEKEQLLKLMEHFQAKT-GKYEIEGYPHKLGLLLHGPPGTGKTSLIKAMAIHTRRNIVSVNLSRIKTNQELMDIVFDQSFAVGGEDMPVKLSFKDIIFVMEDIDAASEIVKRRETKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXDEKKDKEAQEAEQVTTIKHQTTYDSKVNDDDTEPDKEMPTMEDLEALATM---------------------------------------MMSGGSEGEGKGKKA----------------------------SSIFSRNDKLDLSGLLNVLDGVVDCPGRIVIMTTNHPEKLDPALIRPGRVDKMLLLDYIKQEQCEEMVKHYFGLMLTD-EQKEQLQEVFDQPIPVN--------------FTPATIEQICAEHETIDDFIEALSAKLPAVLP 655          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 8.580e-114
Identity = 370/807 (45.85%), Postives = 466/807 (57.74%), Query Frame = 3
Query:  162 TGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDFLFNLRRIEEHFIRTIEHEK----VSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSALVVLSSVKEK----GNRDEDSYNM-----VYGGTAEQLKAYRVGTTPPENNWVEV--EDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISK----------SGISAPGADEPDGPMR--------KYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPVG-EELPVTMGFENIIFVMEDVDAASPIVHSRDR---------------------------------------------------SKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPS-GAGTAQPKSATTATSGDASASALAVERPAALKRS------------VSQPIERGRGR----AAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYF--QVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSG---DGGRFTPAMVEQEASEHENVDEFISALE 2261
            +G++ LD  +  S+PL         EWLR    +  +N+    E  +R  +  K         G+ED S EG+RNNILQKAI LYVG L L+Y  +  +L+++K+K    G+   D Y       V+GGTAEQL+ + +   PPE+ WV V  E+ V+F+Q   V   G    G    +D      + F+C  + G+ +++ FIQKA+ WY +EM+STEDH RY+Y+LI++           G+  PG +  DG  R        +YKRYRL D KDF SLFFPEKE LLRVLE+FE K  G+YAI+GYPHKLGLLLHGPPGTGKTS+IKALAC TGR+++ VPL ++ TNQ+LM+I+ D+ FPV  +ELP+++  +N+IFV EDVDAAS IV +RD                                                    SK          XXXXXXXXX    K  SK  S  AGTA+ K+     +    +S   +  P     S            +S P   G       A A  +V   E   XXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXX         K+ +K DKLDL+GLLNVLDGVVDTP RIV++TTN  + LD ALIRPGRIDK I LGYM+Y+AALEMT H+F  +   +  EQ +RL+++F +     + +   + G   DGG+ TPA VEQ   EH+ VD+F+ ALE
Sbjct:   59 SGHLALDAFLLASVPLLRTKRCSLQEWLRTCSLNLFYNVNNTYETTVRFQKESKNVMYAPEEAGSED-SEEGKRNNILQKAILLYVGHLDLEYRRSQALLTAIKQKPSARGHGGIDRYGRAKQPRVFGGTAEQLRCFSISIAPPEDVWVLVDEENDVWFKQAKAVHSGGGGRDGSAPDRDTVTTIVYDFRCDRQGGNIKVKDFIQKAYEWYTDEMKSTEDHSRYMYSLIAQPEPARSRLGIGGVEFPGMNG-DGRGRNPLDPSPLRYKRYRLGDVKDFDSLFFPEKEQLLRVLENFEAKR-GRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQELPISLTHDNVIFVFEDVDAASKIVKARDTNDTTSGISIRSKRSVRPLKGVSAGAGGSKNGRSXXXXXXXXXXXXXXXSSVSKAGQTKRDRGKXXXXXXXXXKTADKAESKGSSINAGTAESKAVDVPNTAPPPSSLPLMSPPLTQSPSTSDNAKTAPSSLLSSPSTSGEDMVVVAAVAEGEVKEGEAAXXXXXXXXXXXTNAADVRSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRESKTIRVKYANKYDKLDLSGLLNVLDGVVDTPGRIVVLTTNLVDVLDRALIRPGRIDKTILLGYMKYDAALEMTKHFFPEESESITDEQKKRLQDVFSDEAAAVRCKRSSKRGGGADGGQLTPATVEQMLGEHDKVDDFLDALE 862          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A7S1U3S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S3_9STRA)

HSP 1 Score: 351 bits (901), Expect = 1.890e-107
Identity = 191/396 (48.23%), Postives = 268/396 (67.68%), Query Frame = 3
Query:  132 SQVGVINAMRTGNVVLDMMIAMSIP-------LALQGLFKFW-----EWLRPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDP--ESGKNATKDLKR-----KTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPVG-EELPVTMGFENIIFVMEDVDAASPIVHSRDRSK 1259
            +Q G+IN ++TGN+++DM IAM++P       + LQ +  +       WL PR  D+          + R +  EK+++ WG+E    + QRNNILQKA+SLY+ ++ + Y  A + L ++KEKG+RD DSY M YG TAEQLKAY+V T P EN WVE+E+ ++F + +   E+ +   + G +A  + +R     K  F F+   R+GD  I ++I KAF WY +EME  +D  RY+Y L + +  S    DE +   RKYKRY+LS+ K F++LFFPEK+ LL++LEHF+ K+ GKY I+GYPHKLGLLLHGPPGTGKTS+IKA+A HT RN+V++ L++IKTNQELMDIVFDQ F VG E++P+ + F++IIFVMED+DAAS IV  R+  K
Sbjct:   32 AQYGLINNLKTGNMIVDMAIAMTVPFFFSTLSMVLQSVTPYVVNTVNRWLSPRPVDW----------YHREVVFEKITTSWGSEVMGRD-QRNNILQKAVSLYLNEMTVDYRDAKLNLVALKEKGSRDNDSYQMQYGTTAEQLKAYKVTTVPQENQWVEIEEDLWFMKGSDAAEDSESRDKGGGSAGSETRREYNKEKICFHFRTKLRNGDEVINAWIDKAFQWYIQEMEKLQDDSRYMYVLCADA-TSISNNDEGNDGQRKYKRYKLSEEKTFNALFFPEKDQLLKLLEHFQAKT-GKYEIEGYPHKLGLLLHGPPGTGKTSLIKAMAIHTRRNIVSINLSRIKTNQELMDIVFDQTFSVGGEDMPIKLSFKDIIFVMEDIDAASDIVKRREPKK 414          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A7S4B551_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B551_CHRCT)

HSP 1 Score: 351 bits (901), Expect = 1.530e-104
Identity = 269/738 (36.45%), Postives = 381/738 (51.63%), Query Frame = 3
Query:  114 AMDHVASQVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQ-LGLKYDS-ALVVLSSVKEK--GNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTS-FVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGIS------------APGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSGDGGRFTPAMVEQEASEHENVDEFISALEARVS 2273
            ++D   +Q  V+N+MRTGN+++DM+IA+ +P   + +F   + L  RI DFLF+ +  E+  IR I    V S     D      +N +LQKAI+LY+ + + L ++S A V L++  +   G    D YN         L  YR+   PPEN+W+++E  + FQQ T  E   + E  +   + ++R+   F  K + +DG  +I+ FI++A +WY +E+    D  RY+YT+ISKS  +            A GAD   G    YKRY+LSD K F SLFFPEKE++L++L  F+ K AGKY ++GYPHKLGLLLHGPPGTGKTS+IKALA HTGR+++N+PLA+I TNQ+LMD++ D +  V G+++ V + F+++IFV+ED+DAAS IVH R+                           + S L       + + AT  T+    +S    E+      + S   E     A+A  K     +C+                         XXXXXXXXXXXXXXX                                 P                                     +K  S+ D+L+LAGLLNVLDGVVDTP RI+IMT+NHPE LD ALIRPGRIDKKI+LGYM++    +M  HYF V ++  EQD R++ +           GG +   G + TPA +EQ  +EH  VD+ + AL  R +
Sbjct:   16 SLDLNGAQFSVLNSMRTGNMIIDMIIALLVPFFFKLIFSDSKQLLLRIYDFLFDRKPSEDECIREISFLSVGSSLTGRD-----HKNQLLQKAITLYLTEEMRLPFESRAQVSLTAFHDTSVGMGPIDKYN--------PLARYRLMWQPPENSWIQIEPGLEFQQRTKREGADEDEDDRGNLRPIQREMIIFELKTSKKDGPQQIDRFIERALSWYKQELLKMRDDARYMYTMISKSPSASIVSEMTSTKRGATGADNKGG--MPYKRYKLSDQKTFKSLFFPEKESILKLLSDFQQK-AGKYGVEGYPHKLGLLLHGPPGTGKTSLIKALAQHTGRSIINIPLARINTNQQLMDVMHDLRICVPGQDMAVPLTFKDVIFVIEDIDAASSIVHRREH--------------------------EGSNL-------RLRKATVETTRSVPSSGFLTEKVTREMSTASDDEE-----ASAAPKQNNVAQCSMAVGPAAEHGGTLPSLAVQPAMTSPXXXXXXXXXXXXXXXSQPPAAISFP-----------------------PAAMPNRHVPSKMEHLLVNGMPSLSSEAEANDTKSSLLAKLLSEEDELNLAGLLNVLDGVVDTPERILIMTSNHPERLDPALIRPGRIDKKIFLGYMQHSECKQMLAHYFTV-EVTKEQDARIQAML----------GGAK---GLKMTPADMEQLCAEHSTVDDILDALATRCA 662          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A7S2RQC3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RQC3_9STRA)

HSP 1 Score: 349 bits (896), Expect = 1.820e-104
Identity = 249/713 (34.92%), Postives = 353/713 (49.51%), Query Frame = 3
Query:  135 QVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDFLFNLRRIEEH-FIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQL--GLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPVGEE-LPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSGDGGRFTPAMVEQEASEHENVDEFISALE 2261
            + GV++ MRTGN V+DM+IA  IP+ LQ LF     L+P I++FL  L + ++  F+R I +E   ++ GT+      QRN ILQKAISLY+G+   G+ Y++A   L +VKEK + + D + + YG T + L AY +   P  ++W+EV D V FQ ++  +E+ + E  +  T     KT F F+    +G+  IE +I KAFAWY E++  T D       ++S         DE DG +   +RY+LS  K F SLFFPEK+ +L+VL++F+ K+ GKY I GYPHKLG+LLHGPPGTGKTS+IKALA HT RN+V+VPLA+IKTNQELMDI+F+ KF V +E +P+ + F+++IFVMEDVD AS +VH R  +                       P  A +      T+ P         DAS +++ V   AA         ++G      T  V                                                                             V GP+                                      + + TDKL+L GLL VLDGV+D  +RI+IMTTNHPE LD ALIRPGRIDK + L Y++ +AA+ +  HYF   K +    + +R +F ++P T             + TPA +EQ  +E E  + F+  L+
Sbjct:   56 EFGVLSMMRTGNPVIDMIIAFMIPMILQFLFNSSHHLQP-IKEFLVKLFKPKKKMFVREISYESKRNQDGTD------QRNRILQKAISLYLGKHSEGINYEAACTNLMAVKEKSSMNHDIWQVEYGNTVDALNAYSLVVAPRIDDWIEVSDGVEFQ-ISVTQEQQNSEGNRTVTV-ANEKTFFTFQSDRSNGEQLIEDYIAKAFAWYKEQVALTTDTNTKFMYMLSNDKPKKDDGDEQDGAVTHCRRYKLSFRKKFDSLFFPEKQMILKVLDNFQTKT-GKYGIPGYPHKLGMLLHGPPGTGKTSLIKALAAHTNRNIVSVPLARIKTNQELMDIMFELKFQVADEDIPIKLKFKDVIFVMEDVDCASKVVHRRTPAT--------------PTNNSADEPNPAEEY----STSMPS--------DASEASVEVVGEAAKDLD-----DQGENNPNDTLGVL-------------------------------------------------------------GCLLGLTGNTEGKDGVAGPI--------------------------------TKSSYSYVTSTDKLNLQGLLEVLDGVIDAEDRILIMTTNHPEKLDPALIRPGRIDKILKLDYVKSDAAVSLVKHYFGDCKFE----KLVRNVF-DHPRT-------------KVTPAQIEQMVAEFETEEAFVEQLQ 616          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A812US84_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812US84_SYMMI)

HSP 1 Score: 334 bits (857), Expect = 5.760e-102
Identity = 174/339 (51.33%), Postives = 237/339 (69.91%), Query Frame = 3
Query:  246 RPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQL-GLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEP---DGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSR 1247
            +P  + FL  LR  +   ++T+++E   + WG+   + + +RNNILQKAI+L++ ++ GLK +S+ +   +VKEKG+RD +SY MVYGGTAEQL+AY + T PP   W+E+   + F+Q   +E   + E+     K  K    F F+    DG+ +I  F+Q+AF WY E+M++  DH RYLY L+                D P R YKRY+LSD K F+ LFF EK+ LL++L HF++KS GKYAI+G+PHKLGLLLHGPPGTGKTS+IKA+A HTGRNVV++PLA+I+TNQELMDIVFDQ F V GE++P+ + F++IIFVMEDVDAASPIVHSR
Sbjct:    2 QPAFQAFLDGLRTNKNVVLKTLDYEFRMNAWGSVQRAGKEERNNILQKAITLFIAEIKGLKLESSKISFMAVKEKGSRDNESYEMVYGGTAEQLQAYSINTLPPNAVWIELRKGLNFRQSV-IEPNNEGEN-----KITKMTIRFEFRGDNPDGEKKINDFVQEAFDWYVEKMKALADHSRYLYMLVKSPXXXXXXXXXXXXXDAPTRVYKRYKLSDEKSFACLFFREKQMLLKLLSHFKDKS-GKYAIQGFPHKLGLLLHGPPGTGKTSLIKAMAQHTGRNVVSIPLARIETNQELMDIVFDQSFAVKGEDMPIKLSFKDIIFVMEDVDAASPIVHSR 333          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A8J5Y1R3_DIALT (AAA domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1R3_DIALT)

HSP 1 Score: 337 bits (863), Expect = 1.780e-98
Identity = 252/752 (33.51%), Postives = 349/752 (46.41%), Query Frame = 3
Query:  135 QVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSA-------LVVLSSVKEKGNRDEDSYNMVYGGTAE--------QLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATK--DLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISK--SGISAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSGDGG---------------RFTPAMVEQEASEHENVDEFISALEARVSMKRP 2285
            Q+G+ N  RTGN  LDM+IAMSIP+ L+ L     W+R R+ + L  L+  +  F R I +E+  + WG+     + QRNN+LQKA++LY+ +   K  +A       L+ +    E    D+          A+        +LK YRV ++ P N   E+E  +  +  T  ++EG  +  KNA+     K+  +F  +C   +   R+  FI++ + WY  E+    D  RY+Y L++K  S  S     + D P + YKRYRLSD K F SLFF +KE LL +L +F  KS G+YAI GYPHKLGLLLHGPPGTGKTS+IKALA HT R++VNVPL++I TNQELMD+VFDQ++ V GE++P+ + F+++++V EDVDAAS +VH RD                                  G   A+ ++ T   + +A+  A A           +    +G   AAA  +  + E                                                                        +  G   AG                                        DKLDL+GLLNVLDGVVDTPNRI++MTTNHPE LD ALIRPGRIDK +YLGYMR   A  M  HYFQ+ +L P Q  +L  +            G   G G                  TPA VEQ  +E ++V+  + AL  R++   P
Sbjct:   20 QLGLSNMFRTGNHALDMIIAMSIPMVLKLLMDSSGWMRDRLTEGLRWLQHSDSFFERVIVYEERRTSWGSVMSGRD-QRNNVLQKAMTLYIDEHCAKQMAASRVAKVDLMAIKFGDENRRYDDXXXXXXXXXDAQANRKTGLGELKHYRVTSSVPSNVDFELEKGLKLRIHTSDDQEG-KQGEKNASSFGGSKKVVAFTIRCEGPNAVQRVNGFIERCYTWYKGELSKKVDKSRYMYVLMTKTFSTRSNDNDGDSDAPDKSYKRYRLSDEKTFDSLFFAQKETLLHILANFAKKS-GRYAISGYPHKLGLLLHGPPGTGKTSLIKALAHHTQRSIVNVPLSRISTNQELMDVVFDQRYSVKGEDVPIRLKFKDVVYVFEDVDAASKVVHRRD----------------------------------GGAPARKETTTVTVTHNAAEGAEAA----------TNGEVKGIDDAAAEAERQVIE----------------------------------------------------------LALKASAAEAASSEAAKGDKSAGPLKLSEMLLLDFP---------------------------DKLDLSGLLNVLDGVVDTPNRILVMTTNHPEKLDPALIRPGRIDKILYLGYMRAPEAARMVCHYFQLDELQPAQMTKLSHMLD----------GMAVGTGSAPPMPHMQTSLLTRLELTPAQVEQLCAECDSVESLLEALAKRITGSDP 629          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A0M0J9R9_9EUKA (Bcs1 aaa-type n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9R9_9EUKA)

HSP 1 Score: 338 bits (867), Expect = 2.080e-98
Identity = 263/766 (34.33%), Postives = 369/766 (48.17%), Query Frame = 3
Query:  153 AMRTGNVVLDMMIAMSIPLALQGLFKFWEW--LRPRIEDFLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLGLKYDSALVVLSSVKEK-----GNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSF--VFKCAARDGDARIESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEPDGPMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSRDRSKG------------------KXXXXXXXXXXXXXXXXXXXXP----------KKASKLPSGAGTAQPKSATTAT---------SGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTK--LDPEQDRRLREIFKEYPTTPKTRGGPRSGDGGRFTPAMVEQEASEHENVDEFISALEAR------VSMKRP 2285
            A+RTGN ++DM+IAM++PL  + +        LR  +   LF       ++ R IEH+ + + WG      +  RNN+L KAI LY+    ++Y +A V L S+++      G+ D++  N   G    +LK ++V   PP+N W  +       ++  +  E + + G+ A      KT+   V+K  +R   A I++F+ + +AWY  E++  ED+ RYLY +    G S+ G D+     R +KRY+LSD K FSSLFF +KE LL VL+HF  K+ GKYA++GYPHKLGLLLHGPPGTGKTSMIKALA +TGR++VNVPLA+I TNQELMDI+FDQ++ V G+E+P+ +GF+++IFVMEDVDAAS +V  RD                      K                    P          +K+ +L + A +     A  A          S D   + L  + PA    + +Q +     +    R  T+ +                                                                      D      +      XXXXX                         S    K D L+LAGLLNVLDGVVDTP RIV+MTTNHPE LD ALIRPGRID+++ LGYMR++  +EM  HYFQ+    LD    RR+RE           +G P        TPA VEQ ++EH++V   ++ALEA+      VS +RP
Sbjct:    3 ALRTGNPIVDMLIAMAVPLIFKLVLDAAHTTSLREILGQILFFWS---SYYTREIEHKVLQNGWGNMVNMDKDLRNNVLIKAIQLYLDNQKIEYRNASVALVSMQQSRQSCWGDDDDEGENTPAG----KLKRFKVARKPPKNRWTAITSPKVHGKVELMVSESEHDKGEKA-----EKTTIINVYKLRSRQKGA-IDAFVDECYAWYITELKKQEDNSRYLYEMQLNPGKSS-GGDDDSSASRVFKRYKLSDEKQFSSLFFDDKEKLLAVLKHFTGKT-GKYAVQGYPHKLGLLLHGPPGTGKTSMIKALAQYTGRSIVNVPLARISTNQELMDIMFDQQYLVMGDEVPIKLGFKDVIFVMEDVDAASKVVQRRDGKTNFGGGKIELHADAPLNPDEKSMVGGVLEATPWHLLLGSDDPNVQELVDELLEKSERLKAAALSPDTMRAVAAELRVPKPPPPSDDKDRAELEKKSPAERAMATAQMVHEAMSQRCE-RHETIDQFVKMHACALRRLLKAGGAVDRALEDELLGVAPPADAGKPKAPLSAKLGKAAASWPIDGGASTGDRGGDEDDEKDGMDIQMMQAMXXXXXDTGGASNRAGGDAPPGGAGARILPSSSIALKKDTLNLAGLLNVLDGVVDTPERIVVMTTNHPEILDPALIRPGRIDQRLLLGYMRWQNVVEMIKHYFQLGTEGLDESLVRRVREAILGN----DAKGLPALN----LTPAQVEQLSAEHDDVASMVAALEAKATGMIQVSARRP 744          
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Match: A0A2R5GLN4_9STRA (ATP-dependent zinc metalloprotease FtsH-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLN4_9STRA)

HSP 1 Score: 330 bits (847), Expect = 2.080e-97
Identity = 249/733 (33.97%), Postives = 347/733 (47.34%), Query Frame = 3
Query:  123 HVASQVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEW-LRPRIED---FLFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQLG--LKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNWVEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARIESFIQKAFAWYCEEME-STEDHGRYLYTLISKSGISAPGADEPDG-----PMRKYKRYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPV-GEELPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKXXXXXXXXXXXXXXXXXXXXPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQPIERGRGRAAATRKVTLFERCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSVCGPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKWTSKTDKLDLAGLLNVLDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMTMHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSGDGGRFTPAMVEQEASEHENVDEFISALEARVSMKR 2282
            H     G++N  RTGN +LDM++AM +PL +Q L  +++  LR R+     FLF+ +     F R I  E+ +   G    S    RNNILQKAIS+Y+G+L   ++YD A   L +V+E    + D +   YG T EQL AY++   P  N W  +E+ + F+    VE+E   +S  N+     ++T++ F+   +DG   IESF+ +AF WY E++  ST+D  +YLY L +K   S    D  D      P R   RY LS  K F S+FFP+K++LLRVL++F +K  GKY IKGYPHKLG+L+HGPPGTGKTS+ KALA +TGR++V++ L  I+TN++L   + D ++ V GE++PV++ F+++IF++EDVDAA+ IVH R    GK                     + +S L S  G  Q          D    +L          +       G G  AA     +F                                                                         S+  PVG                                   S W S+TDKL LAGLL V+DG++DT  RIVIMTTNHPE LD ALIRPGRIDK  +L Y+  +AA+EMT  YF       E  RRL+ +F +                   TPAM+E  A+E +   EF+  LE      R
Sbjct:   15 HPGLATGMLNVFRTGNPMLDMLVAMMLPLLVQALIGWYQRSLRIRLRKVWAFLFDEKA---PFERLIVFEETT---GYGRNSHADTRNNILQKAISMYIGKLKDEIEYDRACTNLMAVRESYTMNRDVWEAQYGSTVEQLAAYQLVNLPNMNEWATLEEGLKFRMSINVEQE---DSNGNSISRKTKQTTYTFQSTRKDGPEHIESFLVRAFDWYKEQIRASTDDKTKYLYVLNNKKTKSDENNDNDDNVRVGMPAR---RYALSGRKTFDSIFFPQKDSLLRVLDNFMHKR-GKYEIKGYPHKLGILMHGPPGTGKTSVTKALAQYTGRHIVSINLGAIRTNEDLQRAMIDCRYSVPGEDMPVSLQFKDVIFLLEDVDAATKIVHRR---AGKARKPRQTTSEDPALDAETLDSEGSSALDSPTGEVQ---------SDDDXXSLGFGLGEXXXXASQNGGLGGAGGGAADVLGAIF------------------------------------------------------------------------ASLATPVGGSGDKKEQGPLTR----------------------SSWASQTDKLSLAGLLEVMDGILDTEGRIVIMTTNHPERLDEALIRPGRIDKIFHLTYVGADAAIEMTKLYFGAAST--ESRRRLKSLFAQKDVL--------------LTPAMIESIAAEADTESEFVGHLERAAEAMR 612          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH94_ECTSI4.520e-29466.23AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9U422_9STRA2.200e-12040.00Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5K8D9_9PHAE8.580e-11445.85AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1U3S3_9STRA1.890e-10748.23Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4B551_CHRCT1.530e-10436.45Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S2RQC3_9STRA1.820e-10434.92Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A812US84_SYMMI5.760e-10251.33Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8J5Y1R3_DIALT1.780e-9833.51AAA domain-containing protein n=2 Tax=Diacronema l... [more]
A0A0M0J9R9_9EUKA2.080e-9834.33Bcs1 aaa-type n=1 Tax=Chrysochromulina tobinii Tax... [more]
A0A2R5GLN4_9STRA2.080e-9733.97ATP-dependent zinc metalloprotease FtsH-like n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:454371..467905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score848.2
Seed ortholog evalue2.8e-243
Seed eggNOG ortholog2880.D8LH94
KEGG koko:K08900,ko:K14771
Hectar predicted targeting categoryother localisation
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Exons13
Model size3124
Cds size2175
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.911259-UTR-C-linearis_contig89:454370..4552031622930694.911259-UTR-C-linearis_contig89:454370..455203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 454371..455203 -
1690881201.2481227-UTR-C-linearis_contig89:454370..4552031690881201.2481227-UTR-C-linearis_contig89:454370..455203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 454371..455203 -
1622930695.1754415-UTR-C-linearis_contig89:467789..4679051622930695.1754415-UTR-C-linearis_contig89:467789..467905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 467790..467905 -
1690881201.4126167-UTR-C-linearis_contig89:467789..4679051690881201.4126167-UTR-C-linearis_contig89:467789..467905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 467790..467905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.9248507-CDS-C-linearis_contig89:455203..4555181622930694.9248507-CDS-C-linearis_contig89:455203..455518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 455204..455518 -
1690881201.273762-CDS-C-linearis_contig89:455203..4555181690881201.273762-CDS-C-linearis_contig89:455203..455518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 455204..455518 -
1622930694.943569-CDS-C-linearis_contig89:455737..4561261622930694.943569-CDS-C-linearis_contig89:455737..456126Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 455738..456126 -
1690881201.283903-CDS-C-linearis_contig89:455737..4561261690881201.283903-CDS-C-linearis_contig89:455737..456126Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 455738..456126 -
1622930694.960941-CDS-C-linearis_contig89:456431..4567261622930694.960941-CDS-C-linearis_contig89:456431..456726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 456432..456726 -
1690881201.2935538-CDS-C-linearis_contig89:456431..4567261690881201.2935538-CDS-C-linearis_contig89:456431..456726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 456432..456726 -
1622930694.9785385-CDS-C-linearis_contig89:457052..4572261622930694.9785385-CDS-C-linearis_contig89:457052..457226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 457053..457226 -
1690881201.303381-CDS-C-linearis_contig89:457052..4572261690881201.303381-CDS-C-linearis_contig89:457052..457226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 457053..457226 -
1622930694.9952528-CDS-C-linearis_contig89:457541..4576961622930694.9952528-CDS-C-linearis_contig89:457541..457696Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 457542..457696 -
1690881201.3134332-CDS-C-linearis_contig89:457541..4576961690881201.3134332-CDS-C-linearis_contig89:457541..457696Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 457542..457696 -
1622930695.0099034-CDS-C-linearis_contig89:458050..4581541622930695.0099034-CDS-C-linearis_contig89:458050..458154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458051..458154 -
1690881201.3238187-CDS-C-linearis_contig89:458050..4581541690881201.3238187-CDS-C-linearis_contig89:458050..458154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458051..458154 -
1622930695.0613291-CDS-C-linearis_contig89:458415..4584841622930695.0613291-CDS-C-linearis_contig89:458415..458484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458416..458484 -
1690881201.3371937-CDS-C-linearis_contig89:458415..4584841690881201.3371937-CDS-C-linearis_contig89:458415..458484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458416..458484 -
1622930695.0778162-CDS-C-linearis_contig89:458885..4590071622930695.0778162-CDS-C-linearis_contig89:458885..459007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458886..459007 -
1690881201.3489695-CDS-C-linearis_contig89:458885..4590071690881201.3489695-CDS-C-linearis_contig89:458885..459007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 458886..459007 -
1622930695.0915706-CDS-C-linearis_contig89:459210..4592791622930695.0915706-CDS-C-linearis_contig89:459210..459279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 459211..459279 -
1690881201.3601363-CDS-C-linearis_contig89:459210..4592791690881201.3601363-CDS-C-linearis_contig89:459210..459279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 459211..459279 -
1622930695.1172533-CDS-C-linearis_contig89:459589..4596911622930695.1172533-CDS-C-linearis_contig89:459589..459691Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 459590..459691 -
1690881201.3709242-CDS-C-linearis_contig89:459589..4596911690881201.3709242-CDS-C-linearis_contig89:459589..459691Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 459590..459691 -
1622930695.1314828-CDS-C-linearis_contig89:460303..4604771622930695.1314828-CDS-C-linearis_contig89:460303..460477Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 460304..460477 -
1690881201.3808465-CDS-C-linearis_contig89:460303..4604771690881201.3808465-CDS-C-linearis_contig89:460303..460477Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 460304..460477 -
1622930695.1464672-CDS-C-linearis_contig89:460771..4609571622930695.1464672-CDS-C-linearis_contig89:460771..460957Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 460772..460957 -
1690881201.3927748-CDS-C-linearis_contig89:460771..4609571690881201.3927748-CDS-C-linearis_contig89:460771..460957Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 460772..460957 -
1622930695.1594255-CDS-C-linearis_contig89:467768..4677891622930695.1594255-CDS-C-linearis_contig89:467768..467789Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 467769..467789 -
1690881201.4025466-CDS-C-linearis_contig89:467768..4677891690881201.4025466-CDS-C-linearis_contig89:467768..467789Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 467769..467789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16422.1prot_C-linearis_contig89.16422.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 455204..467789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16422.1

>prot_C-linearis_contig89.16422.1 ID=prot_C-linearis_contig89.16422.1|Name=mRNA_C-linearis_contig89.16422.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=725bp
MDHVASQVGVINAMRTGNVVLDMMIAMSIPLALQGLFKFWEWLRPRIEDF
LFNLRRIEEHFIRTIEHEKVSSRWGTEDGSTEGQRNNILQKAISLYVGQL
GLKYDSALVVLSSVKEKGNRDEDSYNMVYGGTAEQLKAYRVGTTPPENNW
VEVEDTVFFQQLTGVEEEGDPESGKNATKDLKRKTSFVFKCAARDGDARI
ESFIQKAFAWYCEEMESTEDHGRYLYTLISKSGISAPGADEPDGPMRKYK
RYRLSDGKDFSSLFFPEKEALLRVLEHFENKSAGKYAIKGYPHKLGLLLH
GPPGTGKTSMIKALACHTGRNVVNVPLAQIKTNQELMDIVFDQKFPVGEE
LPVTMGFENIIFVMEDVDAASPIVHSRDRSKGKKRGTKTTVKVTQEVSHP
VTTPKKASKLPSGAGTAQPKSATTATSGDASASALAVERPAALKRSVSQP
IERGRGRAAATRKVTLFERCTTTTLESSSSSLCTDDGDDNGPATAGGANN
EASGGGDGGARKKDDDDGADSDGSSCCSGSSSSDGSGDDMSVCGPVGAGS
DDDDEALMVALAKSLGDGGGGGGDKKKKKKKKSKWTSKTDKLDLAGLLNV
LDGVVDTPNRIVIMTTNHPETLDAALIRPGRIDKKIYLGYMRYEAALEMT
MHYFQVTKLDPEQDRRLREIFKEYPTTPKTRGGPRSGDGGRFTPAMVEQE
ASEHENVDEFISALEARVSMKRPF*
back to top

mRNA from alignment at C-linearis_contig89:454371..467905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16422.1 ID=mRNA_C-linearis_contig89.16422.1|Name=mRNA_C-linearis_contig89.16422.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13535bp|location=Sequence derived from alignment at C-linearis_contig89:454371..467905- (Chordaria linearis ClinC8C monoicous)
AAACACACCCTCACACGCATCTGGCGCATCCGTCGCCACAACTCGACAGA CTCTCGACTACCGAGCCACCATAGTCACCAGAACCACTCCTCCGTCAAAG AAGCGAGGGTATCGCCATGGATCACGTTGCGTCTCAGGTAAATCCTGTTT TTCGTGGCGCATGATTGCTCGCTGCCCTGTCCATTTTCTCCGTCTTCCTT CACGTTCGCCCGACAGACCAAACAGGGCACCTGAGTAGAGCCCATTGGCG TACCGTGAAGTAAATCGCCAGGCACGCAGTTCGAAGATAGTTCGTTGATC AGCACGCACCGTCCAGCGTGGTAATACTATGGGGCTCTAATTTTGCCGTG GAGGAGATCAGAAAAAACAAAAAAACAAACGTCCCGCGGCTTCGCTGAAG AGACGTGAAGTTTGCAGACCCTGTACAACTAAGTTGCTAATTTGGTTCAA AAAAGGATTTCCTCACCTGTGTGTGCGTGTTCTTTAGGACTCTCTGATGG CTCTAGCACTTTTGTGACCACGGGCTGTGATCTTGCTAGATTTTAGGGAT TAGCAACTGTAACGAGTTTAAAGTGAAGACAACAACAACAACAACAACAA CAACAACAACAACAGGTGCGTCAGGCACAAAAGTTCAGATGCATGGGTCT TTGTGTCCGTCGGTGTAGGCAGCAATGTCCATCTCATTTTGTGCGCGGAG GCAGACGCCACCAGAAAGGTGAAGGACGCTACGTACACGGCACTAGGTTT GCTAGAGGGAGCTGTACTGTCTCGGTAACCTGGCTTCGCTGCGCCATCTA AGGAGGATGGATGGGTGGCGACGAGCTGAAGACTGGGCTGGTTGACCCCT TCGGCGCGAGATTTTTTTTTGAAGACCAAGCACCCTAAGTGCAACGAGGG AGAAAGCGAGGGACCGGCTGGGAAGGACAGCGACGAGAGCGTGTACGGAC GGAGCGGGTCGAGTGTGGTCGTGCTAGGACTGGCCACAGCGGCACCGGAG CAGCGGCACCGGAGCATGCGGACGACATCGAGCCGTGGCGCACGGACAAA CATTATGTGTTGGCAATTATTTAGGGCTACACTGTTGCAGACAGAATTTT CGTGACTGGTCAACTTTTATTGCTGTAGTTCGATTGGGCGTTCTCTAGGG CTGGGTATCGGCGCAGCCGATCGATATCTTATATATCGAGATCGGCGCAG CCGATATCACGATATTTTGTCGATATATCGGCTTGACAAAATATCGGCGA GCGCAGCGAGCCCGCGAGCGCAGCGAGCCCGCGAGCACAGCGTGCTTCGG CGCGGAGGCGCTCGAAGCTCGCTGTGCGAGCAAAATCGGCCCCCCCCGGC TGGCGAGGGGGCCCCGCTGGAGGCGCCGCCGGAGGCAGAAAATTTGGGGC GTTTTCGCTTCATTTCCAGTCAAAATGATATCAAAGTTGCCCCCAAGACA GGTATCGAACTTCTTGCTTGATATCAAAGTTGCCCCCAAGACAGGAAATT TTCGTGACGAAACACCAAGCAAGAAGTTCGATACAAAAACGCAGTAAAAA AAGAAGGGCTCAAAAGCTGTGGCAGCAGATGAGAGTCACGAATTTATAAT TCTCGTCACAGTAAATTGGAGGTGGAATGGACTGATAGCTAGCTCGAATC GTTAATCGTAACCACACACCACACCATAATGCAGTGCGCAGTGCGGTGAT TTCTCCTCCTTCCCTTTCTCTTCATCGGCACGTTCCTACAAGTTCCTCCT ACAAAACAACGATGAATAACAGCCCAACTCCGCCCATCCCAGAACAACTT CAAGCTGCAGACCGCCCAGCAGACGGCAGACAACCACACTAAATTACCTG CTCGAATCACATGAGCTTCTGACACGACATGCAAAATAAAAACGCCAAAA CACCAACGAAACCACGAAACGCTACGAAACAGCACGCTTCTTCTTTTTTT GGCTAACAGCAGACTTCTTCCACTCGTCCACCACACCCCACACGTTCCGC AAGTACACGAGTAGCTCGACGTTCGAATCTGCAAGGCAACTCCGGTTCGG CGTCACCGTGAGCCCTGCCGTAGAAAACATGCGTTCGGATTGCGCTTGAG ATGACGGAATGGCAAGCACACGACGAGCCAGCGCCGCCAGGAGAGGGTAT TCCAACTGCCTCTTGCGCCACCAGTCGAGGGGATTAGGAAAGACCGTCGT CGTTGCCATAACCCCTGATGCCGTCTTGGTAGGCTTCGACTCCGAAACCC GTATCCCAGGTGCGGCCTTGAAGGCAGCGACCTCCAGGTCGACGATGGTC GCGTATTGCTGGCGTTTGTCGTCCATAGAAACACCAGCAACACCGCTAGC CTGTGCATCCTCAGCATGGGCAGCAGCGGTATTATTCTCGAACGCGCTCA TGCGAGGGCGCTTCGGGTCTCCCTGGGGTGGTGGTGAGACCGGCGGCGAC TGGTCAGGCTCGGAATTAGAACTCTCCGCCGAGGCGGGCGTGTTATTGCT GGCGTGCTTCTCCATAGCAATGTCCACCGCCGCGTCAGCGACAGCGCGCC ATACGGCTGGGTGCTCGCTCGGCTGTATCCCGTAGAGGTGCTTGCACCTC GGGTCGAGGCCCGTTGCGAACACCTGAACCAGCTTGAAGCCCTGGGGTTG GCGCCGCCTGCCTTCCATGTACTTCATGACGTTCGTGCCGTCGCCCCAGC GGTTGGTGAGATCCTCCAGCAGGCCCTCCGCGTCCGGAAGAACGGATTCC ATCGCCTTCTGCCTCGTCGTTGTGAGCCCTTGTCTCGAAGCATTGCGGAG ATTGTTGATTGCGTCCTTAACCCCGTCCCGCAACTGCGCAATGTTTGGGA TGGTCATGCTGCCCGTCACGTACTTAGCTCCCTCCAGGTCCTTCTGCGTC CTCATGAAAGGCTCCAGGATCGGTTCAACCAGCTGCAGCACCTCCCAGTC CTCGTCCGACAACAGGGGAGGGACGCCGTCCAACGACTCGTGCATCTTGA TGGCCTTCTCGAGGTAGAGCAGACGGGCGATCATCGCCCATGTCGACCAC CACCTCGTCTCCACTTCTTGCATCACGCAGAGCGCGACTATCTCGAGGAT GCCGCACAGGGCAGCGAGTCGAGCTGCCATCTGGCTCGACTTCTTGTAAC GCCCTACTAGCGTCCGCGCAAGGCTCACAGCGCGCAGACTCCTGCCGTTG AACACGGATGACGTCGTCGATTCCATGCGGTGGTTGGCGCAGCCGACGTG CGAAATCGTACCCCCCCCACCTCAAGCAGGCGACCCGCCTTGACCATAGA CGGTTCGCAATCGGTGACGCATGCAGTCACCCGACCGGTTAGGTCGTGGC TTTCGATCATGCCCGCTATCAACTTCGCCAAGTCCTCACCCGTAGTTGTC CCGGTGTGCTTCGCGCAGTCCAGGAAAAGGTGCTGCAGCTCCCACTCGGA GTTGATGTAGGCCACCGTCAGCGACATGTACGACTCGTTCCTTCGAGATG TCCAGCCGTCCGTGGTGATCGCGACGAACTCTTCATCGAGCATGAGGGCG ACCTCGGTTTCGAGACCCCTTTAACAGCGCGCATCCTCGAAAGAAGGCCT TTGCGGTCGGGAACCTTGGCCTTCTTGTTGAGTCTCTGGACGACGACCCT GAACTCCGGGTACTCGACGAACTAGCGAATGGTCGAGAGGGCCGAAGGGG AGGAGGGGGTTCATCGGGAAATAGTTAGATGCGCTGCATATCGTTTCGAA AGGTGCTGCCGCCTGTCAAGTTGGAAGTGGCAGCTGTGGACAGCAATTTT CTACAACCTTGCCTTGGTAAAAAAGCGTCACAGGTACCTATAGTCACGTA GAACGGCAGTAATTATTGCTTTAAGAGTACACATCTAATCAACGTATAAC ACGCGCCTGCTTCGAAAAACACTGCTGTATCGCTCCAAATATTTACACAT CTAATCAACGTACACGCGCCTGCTTGAAAAAACACTGCTGTATCGCTCAA ATGTGTACACATTAGTACACATGGGTGCGTGCGATACGCGCCTGCTTGAA TTGTACTCGCTGAAACACTTTTTACTTTTTACTCTACACTTTTAAAAAAA CAAAGAAACAACACGGCTACCTTGCTGTGTACTGCTGTGCAGACTACCTG GTACTACAGTAAAAATTTTTTTTTTTTTTTTCAACTTGCGCTGAAAAAAT GCACAAAAACTTACCGACAGAGCGAGGTAGTTGTTGACGATGAGACGAAC CAAATCATCGTGCCACTCTGGCAACGCCTCCAGGAAGTGCTTCTTGATCC CTCCTGCTGCTGCTCCTCCTCCTGCTGCTGGTGAGGTGGCGGAGCCGAGC TTCTTGGCACGCTCGATCTCGTGGAATGCATCCCTGTGTCCAGGCCTGGT GGTGTTGAGATGAGACAAGAGGTTGCTCGGCGATCCCTTTCCGAACTTGG CCTCCGCGATGTGAAAGTTGCCGCTGGCAACGCACAACTGACAGATCGCG ATGTTCGAGAGAGTGGACTTTCGATACACCCTGAAATGCTTCCACGCAGC GTGGTGGGCGTTCGCGGGCTTGGGCAGCGTCGGCTCTGACTGTACCCTCT CCGCTTTCTTGGCACTCTCGGTAGCCTTCACATCTCTGCTGTTTGGAACT GGTTCAACGGAATCCCCCGACGTGGCGGACCCTCCACCTTGGTCCGCTGG TGGCTGGGTGCTGTTTGGGTCCATATGTCTACTGTTGTTCTGTGGCTGGT GGTACACAGCACGCTGCGTCCGCAGTGTTTTTAGAGGGGGCTCCGTACGT GTATGTGATGATCCAAGGAGCCCCTTTTCGATTCACGGAACCCCCTCAAA AAAATATCGTGGGCATATCGGTGCCCACGCTACGCTATCCCTACGCTATA TATCGCCGCGATATATCTTACATATCGATACCGATACCCAGCCCTAGCGT TCTCTATATTGATTCGTGGTGCAGGTTGCCTCACCCTCGTGTGTTTTTGT GGTTTTATTTAGGCTTTCTGCTAGCCACGTTATGGTTTTTGGGTATTATT GGTGGTAGGCTCCTTGCGCTCTGTGACCACGGAAATTGGCCGTGTCTGTT GGATCAGTACGGACAAAGAGGGTACTGGGTGAAGAGATCGGCATGGTTTT TTATGTGAAGACAACAACAACAACAACAACAACAACAACAACAACAACTG GACCAGTACCTACTGGTAGTACGACTGGTACTGGCAGTAACTGGTTTTGG AGCCGCCAGTACCGCCAGTACTTTAGTGAAGCCAATTTTTTGCTCTAGTG AAGCCAAATCGCGTAGAAAAGCGCCTCCGGCGGGGCGCCTCCAGCGGGGC GATTATTCAGTAAAATTTGAAAAACAAATACAAATAATGTGCAATGACAT TCTTTTCTAAGCCCTTATTTCCTTGAACTTAAAAAAGTTTTATCCTCCGG GGGCGCCTCCGGTGGGACCCCCTCGCCAGCCGGGGGGGGCCGGTGGTCGC GGCTTCGCCGCGTGCCCAAAGTACTGGTAGAGTACTGGTGTACAGCAGGT GCTGGTTTTTTGTGATGACGTCACTGGTTTTGTAGAGAGACGCGACAGCG ATGGCGCGGATACCCCGGGTGCCTTAAGTGTGTACCTGCATCGTGGATTC CTAATCAGTGTAAATGTTTACAATACTGCTGTGCCTAACACAGATGTTCG GGATAGACTCGGGATATTGTCAATTGATGTGATGGCTTTGGTTGGCTGTT CTTTTTCACTGTATGTCCACGGCATTCATTCTGGCAGCACTTCAGACAGC AGCTGCGTGCTCCATCCTTGTTCCCACGCCTACCGTGTGTTTTTGTACAG ACAGCACTTTAGACAGCAGTTCCGCTGTAGTCGGCTAATTCATTGGTAGG AAGTGGGAACGGGGGGGGGCGATGCTGCTGTAGTCGAATGGAGATTGCGG GCGTGCAGTTCAGATTTGGACACGCATAACCTGCTGTAGGTATACTAAGT ATAAGTTGTACCTCTTCGGGCTTGTGTACCCTTTCCCTGCTAAAAGTGTG CGTGTTCTTTAGGGCTCTCTGATGGCTCTAGCACTTTTGTGACCACGGGC TGTGATCTTGCTAGATTTTAGGGATTAGCAACTCTGTAACGAGTTTAAAG TCAAGACAACAACAACAACAACAACAACAAAAACAGGCGAGAATGCACGC AGTCACAATTTTTCTTCTTTTTTTTGGCGTAGTTTGGGGGCATAAAAAGC GAAAAAACGAAAAAACGAAAAAACGAAAAACGAAAAAAAAAGTTATCACA CCGAGACTCTAACGCCCGTCTCGGGCGAATCCGAACAACCATGTAGTTGT AACTAAATTAAGAACTAAATAGTTGCTTTTTACCTCAGGACGTGAGTTCG AGTCCTACCAAGGCCATTTTTTTTCTTTTTTTTGTCTTTCTCCCGTCTTT TTTTTTTAAATAATTTTTTGTGACTCCCTCGCTCCGTGTGTCGACCTCGA TGGGCAAAAAAATGAAAATAGTTGCTAAAGTAGTTGTACAGGGTGTGGAA GTTTGTTTGTTGTGCCTCCCACACCCGCCTGCTGCACAGCGCGACTACAG CGACAGGCGATCCAGAAGAATTTAAGGTTGGCTAGCATGCTGCGAAGGTG GACTACTGCTGTGGAGCTGGCTATTTAATTTTATCCAGTTTTTCGCTACA ACCATCGCATGCTCACAAGAGATAGGCCGACGAATTCGTTCTGAAATATT GAAGTACTCCGGAGTATTAATACTTCGAAGTACTCAGCCGTGTGTGTGTG CTGATGGTGTTGATTGCGGGTAATATCAAATACGTTCATTTGTACGCAAT GTATCCCCTTTCCGTATTGACCCCTGGCCCCTGACGGCCTCTTCAACGTT GGGGATGACTTGTCTGTTGCGTGATTTTTCACCCACTCTGCTGTGCAGGT GGGCGTCATCAACGCGATGCGCACCGGAAATGTAGTCCTGGACATGATGA TCGCCATGTCCATACCGCTCGCCCTGCAAGGTCTCTTCAAGTTCTGGGAG TGGTTGAGACCTCGCATCGAAGACTTTTTGTTTAACCTTCGGCGGATAGA GGAGCACTTCATCCGCACCATCGAGCACGAAAAGGTCTGTCCCGGTAGCG GTGCACAGATCTCGGGTGATCTAAAGTACTCTAAATAAGAATGCAAGCGC ACACAAGCGATCTGTTCAACTTCGAGAGAGGGTGTCTTGATTTCATGGTA TCGGCCTCGGGAATGGTTGGCCATCAACTGCTCCTTTCGCGTTAGGGGTT TTGACCAATAACCCCTCCCCCGCAAGAGGAAAAGCAAACAATGCTTGCCG AGTCTCGACTCAATGCGACGGTTTCATGTTGTCAATGGCCATCATCCTAC CATGTCACCACCCTTCCTGTTGTTCCAGGTTTCTAGCAGGTGGGGTACCG AGGACGGCAGCACGGAAGGACAGCGAAACAACATTCTCCAGAAGGCCATC TCGCTCTACGTGGGACAGCTGGGCCTCAAGTACGACAGCGCGCTCGTGGT GCTGAGCTCGGTCAAGGAGAAGGGGAACCGAGATGAAGATTCCTACAACA TGGTTGGTAGTTGTTCAACATGCAACATTATGTTCAGACGACTGGAAGAA AAAAACGAATGGTAAACAATGAACCTTAATACTTCGAAGTAGGAGTTTTG GTTTGGAACAGATCAGGAGCGAGGGTTCTTGACCAACCAATGGAAGCGTG CGAGCTTTCACCTGCTGGCGGCGCAATCTCTTTGGGCCGGAGCGGTCTCC CAGAACGTGGCTTTCAACATCTCGGTTTGATTGTTTTGTACCGTACCATA TTTGTTTTGCGCAAGCACGATAGGTCTCGAACCCGCGGCGATGCGCAGAC TTCTCTTGGCTTCTGCAGCATGCGACAAAGGCAGACAATGTCGAGGAGCT ACGGGACGCCGATTTCGGGGGGGTCATTTTCCTGCATGCTTTTGTTCATG GCAGCAAATACTTCCTCACAATATGTTGCGGAGTTAGGCCACAGGAAAGG CAAGGCACCCGGGGAACTTTCCCGTTAAGTTGTTCGCGCTCCTTCTCTGG TGCTCGTGGTCCTGGTGGAAAGCTTTCTTTGAAACATTCCGATCCGGGTT CACGGAGAATACTTCAGAGCATTCGTTCAATGATGAGCATCCTGGTTGTT GTCAAATCACCCAGGTGTACGGTGGCACCGCGGAGCAGCTAAAGGCCTAC CGGGTAGGCACCACGCCTCCCGAGAACAACTGGGTGGAGGTAGAAGACAC CGTTTTCTTCCAGCAGGTCCGTTGCTCCGCAGGGTATTGAAATACACTGA AGCGATGCGAAATGTTGTTACATACTATCGGAGGCGATTGTCTTTGTCGC ATGTTAGTCGCCCCGAGGTGTACTCGCACCTGCTGGACCGCTTGCACTGT TTTCTTGGGTTGGGGGACTAACCCTCTCGTCTAAGTTTCAAGACATCTAC CCCTTATTATCGACAAAAAAATTACCCTTTCGTCCAAAGATGTGCTTGCT TTGGTCCAGCCACGCGAGAAAGTCTTTACACGTAACAACCGACCGTGCCC TGGTGGTTTCCACTGCATTAAATCAGTTGACCGGTGTGGAGGAGGAAGGA GACCCGGAATCGGGAAAGAATGCCACCAAGGACCTCAAGCGAAAGGTGCG ATGCAACACGTCGTAACATGGGCTTTTGTGGCGCCCGGCATGATTCTCTG TTCAACACCAAGCTTGATAAAATCAACAGTGATTTCTTGTTGAAATGTAG CTCGTCGGACTTAGGCCTTAGGGTGCGAGGGTCCTGACCGGTGGTGCGGT TGTTCTCTCGTTCCTTACGCTCCGCGTGAACAACACGTCGGAAAACAGAC GAGCTTCGTCTTCAAGTGTGCTGCGAGAGACGGAGACGCGCGAATCGAGT CCTTCATCCAGAAGGCCTTCGCCTGGTACTGCGAGGAGATGGAGTCCACA GAAGATCACGGTCGATACTTGTGAGGACAGTATTGGGACTGGGGGCGATG AAGATCGTGTATAGACTGCCCATGGTACACGTTAATTTTCGAGTGACTGT GTCCGGCGGTGTAAGATGGGATAAAGACTGCCATGTACATGGAAAACGTT CATTTTCGGGTGATTGCGTCCGGCGGTGTTTCGGCTGCTTTTAGTTAGCT AGCTGACCCCTCCGTTTTTTTCCGGCTGGCTGTACGTCCGATCCTCGGCG GGATCATTTGGATGGTCTACACGATAGCTGCGGTGTCAACAGATAGCGGT TTCGGTTGCCCGTACGCCCCGTCGTGTGATGGGTCTTGGTTAGATGTGTC GTTTTTTCGGCGAGGCTTTTGGTTTGAAGACAAGCTTGCATGAACACGAA GTGTCTGCTGGTGCATGACAGGTACACGCTCATCTCCAAGAGCGGGATAT CTGCGCCGGGGGCAGACGAGCCGGATGGTCCCATGCGAAAGTGAGTTGTT GGTTCAGTCAACCCCCACACATCCTCGCCAATCCTGTTGCTCGCCCTACT CTGGTCCCATACCGTGGGCGACGTAGCGTATTGCATTGATATCGTGCCCC GTCCCTTGCCCGGCCTGCCATGGGTCTTCGGCCCGGCACGGCCGAGAGAC CCAAAGGATACTTTGATGATTCTGGTAGAACTCTCGGCAGATTTAAGTTT CCAACGAACAGAGAATGTGTGATGTGTCCGACCTTTTCACCCGAACCCAA GGTACAAGAGATACCGCCTCAGCGACGGGAAGGACTTCTCGAGCCTCTTC TTCCCGGAGAAGGAGGCGTTGTTGAGGGTGCTCGAGCACTTCGAGAACAA GAGCGGTGAGTGGCCCGACCCCCCGCCTGGTCTTTTCGCCGGGACGATTG TAGTCAGTACCTTCCTGTCCTTGAAACTGAAACTCCGAAAGGCGTTCTTC GTCCCTTTGAGGCATGAGGCTTTGTTTCGACGCGAGACTCGAGGGTCTAT GATCTGCTTCGAAAGTATATTCTGGCAGTTGATTCACCACCACCGGGCGG CTGCTGGAAGGTAGAACGATACCTTTCCCCCCTGCCACCCCCCCTCCAGC AGCCCTCTATCGTCCCGGGGTTAAGGCAGTTGTAACCCGCTTGCCGCTGT CTTTAACGTTCGTTTAAGCCTCGCGCCTGGCTTCAAAACCCTGCCGCTTC CATCGTGAGCAGGCAAGTACGCCATCAAGGGTTACCCTCACAAGCTCGGG CTGCTCCTGCACGGTCCTCCCGGGACGGGGAAGACGTCCATGATCAAGGC GCTGGCGTGCCACACCGGCAGAAACGTGGTAAACGTTCCACTCGCGCAAA TCAAAACCAACCAGGTATGTTTGAATATTGTTGAATCCGAGCAAGTTTGG GTTGGTCTCCTCGCCCAGACAGCCTTACATAGCTTCTTCTTCTTCTTCTT TCCGTCACGTCTTGTTGACTTTTTACCCTCGAAAACTATCAAAACCTCCA TCCCTCCTCGCTCAACGCTGCTACGCCGAGTAGCTGGTGGGCGCCAGCCT CGTCGTGTTCTAGCAGCGCTTCCGCGCGCTTGTTTTCCCTGCTCAAGGTT CCATATTCAGTTTGCTTATTTGCTTATTTGCTCGACTAAAATGTTTTCCC TGCGCGTCCTATGTTTTGTTGATTGGCAGGAGTTGATGGACATCGTATTT GACCAGAAGTTCCCCGTCGGCGAGGAGTTGCCCGTCACAATGGGCTTCGA GAACATCATTTTCGTCATGGAGGACGTCGACGCCGCATCTCCCATCGTGC ATTCCAGAGACCGCTCCAAGGGAAAGAAGCGAGGCACCAAGACTACCGTC AAGGTATGGAAGTACAGGAGAAGACGTAGACCCTCCAACACTCACCTGGT TCTCAAGCCAACAAACAGAAGGACCCTCCATGTAGCAATTCCTGAAGGTG GTCAACCCTTCAAGCAGACTCAACAATGGCTACGACCTGCTTCTTCGCAT GGCGCCCGTTTCTCTGGTTCCCAACGTGACCTGGCGTTACCGCGGCCTCG TCTCTGCAGCAATATCATGTCGAAACCTCCGAAAAGGGGTTTCGATTTCG TCGATTTTTCCGTTTTTCCGGAAACTTTTGTCCATTCTCGCCGACCCGCC CACGTCCCCGCGCGTTTTCGTCGAGCCAGGTTACGCAGGAAGTCTCGCAC CCGGTCACCACCCCCAAGAAAGCCTCTAAGCTTCCGTCAGGAGCAGGTAC CGCCCAGCCTAAGAGCGCCACCACCGCGACGTCCGGGGATGCCTCCGCAT CCGCGCTTGCGGTGGAGCGGCCCGCAGCGCTGAAGAGGTCTGTCTCTCAG CCCATTGAGAGGGGCAGGGGGCGTGCGGCGGCAACCCGCAAGGTGACACT GTTCGAGCGCTGCACCACCACCACGCTGGAGAGCTCTAGCAGCAGCTTGT GCACCGACGACGGCGACGATAACGGTGAGAAGCTCCGAAGAAGAAACAGC AGGCAGTCATCTGAAACAATGAAGCCGTGGGTAGGTGTTGGGCTTTTACC ACGACCGAATAACGCCACCTCGTATGTATATAGGAGGGACAGAAAAGCAG GACGCAACAGTACTAAGACAGCCAAACCAAGTGATCCTTGGGCAATCCGT TACGTAGTGTAAGTTTTCCTCGATAGCGGGGCCTGCGGTGCATAAGTCGG TACCTCGACACACCTGTCACGCCCCAGTCCCTCACTTCACGAAAACGACA TCCCGCCAATACTACTCTCGCCCATGCAGGCCCGGCAACGGCGGGTGGGG CAAACAACGAGGCCAGCGGTGGCGGCGATGGTGGTGCCCGAAAGAAAGAT GATGACGACGGCGCCGACAGCGACGGCTCTTCCTGCTGCAGCGGGTCTTC CTCGTCGGATGGCTCCGGGGACGATATGAGCGTGTGCGGGCCCGTCGGAG CTGGGAGCGACGACGACGACGAAGCGCTGATGGTGGCGCTAGCCAAGTCC CTCGGGGACGGGGGCGGTGGCGGCGGAGACAAGAAGAAGAAGAAGAAGAA GAAGAGCAAGTGGACGAGCAAGACCGACAAACTCGACCTCGCGGGGCTGC TGAACGTGCTCGATGGCGTCGTGGACACCCCTAACCGGATTGTCATCATG ACCACCAACCACCCTGAGGTAAGCGTGCAAGAAATCCACTTTCGAACGCG TCTCTCTCGGGATTTTGCTCGACGGTTACTAACATAATACTTAAAAAGTT TGACTTGACAACATTTCCCAAACCACAACTGCTCCTTCTTAAGTTCGACT TGCGCTAGAATGCAAAGTCGCAAATTCGCCGCTTCAGATACGCCCAACTC ACGATCTCGCTCAAAACGCGTCTATTGCTTTCAACAGACTCTCGACGCCG CGCTCATCCGGCCTGGGCGCATCGACAAGAAGATATATCTCGGCTACATG CGGTATGAGGCGGCCCTCGAGATGACGATGCACTACTTCCAGGTGACCAA GCTGGACCCCGAGCAGGACAGGCGCCTTCGCGAGATCTTCAAGGAGTACC CGACGACCCCGAAAACGCGTGGGGGGCCCCGTAGCGGCGATGGGGGGCGC TTCACGCCGGCGATGGTCGAACAAGAGGCGTCTGAACACGAGAACGTGGA CGAATTCATCAGCGCCCTCGAGGCGCGCGTGTCGATGAAACGGCCGTTTT GATCCAGTGGTGGCGTCCGGCAACATCGATGAGACGAGGATATACGTTGC CTTAGGACTCACTCTGTGGAATATCTTCTTTGGAGTAGTGTTGACATTGC CTCGACATTTCCAAGTTTTGAAAGAACCCCTAAATTCAAAGACGGGATAC CCCACCCACATGAGAGGCGTTTTATTGCGGTCTTTTTTTGTTTTTTGTTT TGGGGTTGGTTTCGTGGCTGGACGAGGAGGGCAGGCGGTTTATTTGGCGT CGTTTTCTGGGTACTGATAAAGTCATCTCCTCTCTCTGTTTAGCACTTTA ATTTTCTTGGGTTGGGGTTAGAACTTTTTTGCGTTGTCCTGCAGTTTAGG ATAGGTATGTACAAGTATATTATGTAGGTAGTTTGAATTGTGTTCTAGTT TCTTACTTGTTGTTCATATCCAAAGAAGAGGGGTCCTCGTCGATTGATCT TCCAGGCTGCCCAGAGACATGTGGGAGTATATTTTTTGTGGCTGACTTTT GGCATCATCAGTGTTGACTGGTTTGTTTTAGCTCTCTCGAAGCAGAGAGG GAAAACAAGAGGACACCCCCTCTCTCTCAGAGAAGAAGAAAAAAACAAGA TTCTCAACATGGTTTCGGTGTAATTCGGAAGTACCGCCAAGACTATATGT GAATACTTGTTGTTGTGTGAGAGACATAATCGTGACATGGATTTCTGGGT GACAGCAGTAACAGGTTTAAGGAGACTCGGCGGGGCATTGCGGGACGAAG GGGGTTATGTGTTGGGATTGTTTCTGTGTTTTCCGGGTACGCCCTCAATG GCGGGGCCCCCTTTATGTGACGCGCGTGGCTGACG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig89:454371..467905-

>mRNA_C-linearis_contig89.16422.1 ID=mRNA_C-linearis_contig89.16422.1|Name=mRNA_C-linearis_contig89.16422.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4350bp|location=Sequence derived from alignment at C-linearis_contig89:454371..467905- (Chordaria linearis ClinC8C monoicous)
ATGGATCACGTTGCGTCTCAGATGGATCACGTTGCGTCTCAGGTGGGCGT
CATCAACGCGATGCGCACCGGAAATGTAGTCCTGGACATGATGATCGCCA
TGTCCATACCGCTCGCCCTGCAAGGTCTCTTCAAGTTCTGGGAGTGGTTG
AGACCTCGCATCGAAGACTTTTTGTTTAACCTTCGGCGGATAGAGGAGCA
CTTCATCCGCACCATCGAGCACGAAAAGGTGGGCGTCATCAACGCGATGC
GCACCGGAAATGTAGTCCTGGACATGATGATCGCCATGTCCATACCGCTC
GCCCTGCAAGGTCTCTTCAAGTTCTGGGAGTGGTTGAGACCTCGCATCGA
AGACTTTTTGTTTAACCTTCGGCGGATAGAGGAGCACTTCATCCGCACCA
TCGAGCACGAAAAGGTTTCTAGCAGGTGGGGTACCGAGGACGGCAGCACG
GAAGGACAGCGAAACAACATTCTCCAGAAGGCCATCTCGCTCTACGTGGG
ACAGCTGGGCCTCAAGTACGACAGCGCGCTCGTGGTGCTGAGCTCGGTCA
AGGAGAAGGGGAACCGAGATGAAGATTCCTACAACATGGTTTCTAGCAGG
TGGGGTACCGAGGACGGCAGCACGGAAGGACAGCGAAACAACATTCTCCA
GAAGGCCATCTCGCTCTACGTGGGACAGCTGGGCCTCAAGTACGACAGCG
CGCTCGTGGTGCTGAGCTCGGTCAAGGAGAAGGGGAACCGAGATGAAGAT
TCCTACAACATGGTGTACGGTGGCACCGCGGAGCAGCTAAAGGCCTACCG
GGTAGGCACCACGCCTCCCGAGAACAACTGGGTGGAGGTAGAAGACACCG
TTTTCTTCCAGCAGGTGTACGGTGGCACCGCGGAGCAGCTAAAGGCCTAC
CGGGTAGGCACCACGCCTCCCGAGAACAACTGGGTGGAGGTAGAAGACAC
CGTTTTCTTCCAGCAGTTGACCGGTGTGGAGGAGGAAGGAGACCCGGAAT
CGGGAAAGAATGCCACCAAGGACCTCAAGCGAAAGTTGACCGGTGTGGAG
GAGGAAGGAGACCCGGAATCGGGAAAGAATGCCACCAAGGACCTCAAGCG
AAAGACGAGCTTCGTCTTCAAGTGTGCTGCGAGAGACGGAGACGCGCGAA
TCGAGTCCTTCATCCAGAAGGCCTTCGCCTGGTACTGCGAGGAGATGGAG
TCCACAGAAGATCACGGTCGATACTTACGAGCTTCGTCTTCAAGTGTGCT
GCGAGAGACGGAGACGCGCGAATCGAGTCCTTCATCCAGAAGGCCTTCGC
CTGGTACTGCGAGGAGATGGAGTCCACAGAAGATCACGGTCGATACTTGT
ACACGCTCATCTCCAAGAGCGGGATATCTGCGCCGGGGGCAGACGAGCCG
GATGGTCCCATGCGAAAGTACACGCTCATCTCCAAGAGCGGGATATCTGC
GCCGGGGGCAGACGAGCCGGATGGTCCCATGCGAAAGTACAAGAGATACC
GCCTCAGCGACGGGAAGGACTTCTCGAGCCTCTTCTTCCCGGAGAAGGAG
GCGTTGTTGAGGGTGCTCGAGCACTTCGAGAACAAGAGCGGTACAAGAGA
TACCGCCTCAGCGACGGGAAGGACTTCTCGAGCCTCTTCTTCCCGGAGAA
GGAGGCGTTGTTGAGGGTGCTCGAGCACTTCGAGAACAAGAGCGCAGGCA
AGTACGCCATCAAGGGTTACCCTCACAAGCTCGGGCTGCTCCTGCACGGT
CCTCCCGGGACGGGGAAGACGTCCATGATCAAGGCGCTGGCGTGCCACAC
CGGCAGAAACGTGGTAAACGTTCCACTCGCGCAAATCAAAACCAACCAGC
AGGCAAGTACGCCATCAAGGGTTACCCTCACAAGCTCGGGCTGCTCCTGC
ACGGTCCTCCCGGGACGGGGAAGACGTCCATGATCAAGGCGCTGGCGTGC
CACACCGGCAGAAACGTGGTAAACGTTCCACTCGCGCAAATCAAAACCAA
CCAGGAGTTGATGGACATCGTATTTGACCAGAAGTTCCCCGTCGGCGAGG
AGTTGCCCGTCACAATGGGCTTCGAGAACATCATTTTCGTCATGGAGGAC
GTCGACGCCGCATCTCCCATCGTGCATTCCAGAGACCGCTCCAAGGGAAA
GAAGCGAGGCACCAAGACTACCGTCAAGGAGTTGATGGACATCGTATTTG
ACCAGAAGTTCCCCGTCGGCGAGGAGTTGCCCGTCACAATGGGCTTCGAG
AACATCATTTTCGTCATGGAGGACGTCGACGCCGCATCTCCCATCGTGCA
TTCCAGAGACCGCTCCAAGGGAAAGAAGCGAGGCACCAAGACTACCGTCA
AGGTTACGCAGGAAGTCTCGCACCCGGTCACCACCCCCAAGAAAGCCTCT
AAGCTTCCGTCAGGAGCAGGTACCGCCCAGCCTAAGAGCGCCACCACCGC
GACGTCCGGGGATGCCTCCGCATCCGCGCTTGCGGTGGAGCGGCCCGCAG
CGCTGAAGAGGTCTGTCTCTCAGCCCATTGAGAGGGGCAGGGGGCGTGCG
GCGGCAACCCGCAAGGTGACACTGTTCGAGCGCTGCACCACCACCACGCT
GGAGAGCTCTAGCAGCAGCTTGTGCACCGACGACGGCGACGATAACGGTT
ACGCAGGAAGTCTCGCACCCGGTCACCACCCCCAAGAAAGCCTCTAAGCT
TCCGTCAGGAGCAGGTACCGCCCAGCCTAAGAGCGCCACCACCGCGACGT
CCGGGGATGCCTCCGCATCCGCGCTTGCGGTGGAGCGGCCCGCAGCGCTG
AAGAGGTCTGTCTCTCAGCCCATTGAGAGGGGCAGGGGGCGTGCGGCGGC
AACCCGCAAGGTGACACTGTTCGAGCGCTGCACCACCACCACGCTGGAGA
GCTCTAGCAGCAGCTTGTGCACCGACGACGGCGACGATAACGGCCCGGCA
ACGGCGGGTGGGGCAAACAACGAGGCCAGCGGTGGCGGCGATGGTGGTGC
CCGAAAGAAAGATGATGACGACGGCGCCGACAGCGACGGCTCTTCCTGCT
GCAGCGGGTCTTCCTCGTCGGATGGCTCCGGGGACGATATGAGCGTGTGC
GGGCCCGTCGGAGCTGGGAGCGACGACGACGACGAAGCGCTGATGGTGGC
GCTAGCCAAGTCCCTCGGGGACGGGGGCGGTGGCGGCGGAGACAAGAAGA
AGAAGAAGAAGAAGAAGAGCAAGTGGACGAGCAAGACCGACAAACTCGAC
CTCGCGGGGCTGCTGAACGTGCTCGATGGCGTCGTGGACACCCCTAACCG
GATTGTCATCATGACCACCAACCACCCTGAGGCCCGGCAACGGCGGGTGG
GGCAAACAACGAGGCCAGCGGTGGCGGCGATGGTGGTGCCCGAAAGAAAG
ATGATGACGACGGCGCCGACAGCGACGGCTCTTCCTGCTGCAGCGGGTCT
TCCTCGTCGGATGGCTCCGGGGACGATATGAGCGTGTGCGGGCCCGTCGG
AGCTGGGAGCGACGACGACGACGAAGCGCTGATGGTGGCGCTAGCCAAGT
CCCTCGGGGACGGGGGCGGTGGCGGCGGAGACAAGAAGAAGAAGAAGAAG
AAGAAGAGCAAGTGGACGAGCAAGACCGACAAACTCGACCTCGCGGGGCT
GCTGAACGTGCTCGATGGCGTCGTGGACACCCCTAACCGGATTGTCATCA
TGACCACCAACCACCCTGAGACTCTCGACGCCGCGCTCATCCGGCCTGGG
CGCATCGACAAGAAGATATATCTCGGCTACATGCGGTATGAGGCGGCCCT
CGAGATGACGATGCACTACTTCCAGGTGACCAAGCTGGACCCCGAGCAGG
ACAGGCGCCTTCGCGAGATCTTCAAGGAGTACCCGACGACCCCGAAAACG
CGTGGGGGGCCCCGTAGCGGCGATGGGGGGCGCTTCACGCCGGCGATGGT
CGAACAAGAGGCGTCTGAACACGAGAACGTGGACGAATTCATCAGCGCCC
TCGAGGCGCGCGTGTCGATGAAACGGCCGTTTTGAACTCTCGACGCCGCG
CTCATCCGGCCTGGGCGCATCGACAAGAAGATATATCTCGGCTACATGCG
GTATGAGGCGGCCCTCGAGATGACGATGCACTACTTCCAGGTGACCAAGC
TGGACCCCGAGCAGGACAGGCGCCTTCGCGAGATCTTCAAGGAGTACCCG
ACGACCCCGAAAACGCGTGGGGGGCCCCGTAGCGGCGATGGGGGGCGCTT
CACGCCGGCGATGGTCGAACAAGAGGCGTCTGAACACGAGAACGTGGACG
AATTCATCAGCGCCCTCGAGGCGCGCGTGTCGATGAAACGGCCGTTTTGA
back to top