mRNA_C-linearis_contig89.16417.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI) HSP 1 Score: 311 bits (796), Expect = 1.750e-103 Identity = 158/200 (79.00%), Postives = 182/200 (91.00%), Query Frame = 3
Query: 177 RGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKR 776
+GQ++LGSKSFTRKMI+EEMGF PIVRSADI+EA+IGDRTADPADLVLQLGLAKA+ALLPAL+AEA+ G LSTS LLTGDQVVVHDG++LEKPAD DEVR NI YA+SPC TVGSAVLTDI+TG Q SGVDTAEIFFKE+P+ VVTKLC EGTV+ CAGGLMVEH LV+P+I +IDGS+DSVMGLSK+LV +LLE+ K+
Sbjct: 11 QGQIILGSKSFTRKMIIEEMGFVPIVRSADINEAAIGDRTADPADLVLQLGLAKAEALLPALKAEADRGELSTSWLLTGDQVVVHDGRILEKPADEDEVRRNIASYARSPCRTVGSAVLTDISTGQQFSGVDTAEIFFKEVPESVVTKLCGEGTVLQCAGGLMVEHPLVEPFIARIDGSMDSVMGLSKALVLELLEKHKQ 210
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA) HSP 1 Score: 239 bits (609), Expect = 3.310e-75 Identity = 128/202 (63.37%), Postives = 161/202 (79.70%), Query Frame = 3
Query: 174 GRGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALR-AEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQ-VSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIK 773
GR +++LGSKS TRK+I+EEMG+ I+R+ADIDE +IGDR +DPA LVL++G AKADALLP+L A A GA LLLTGDQVVVHDG+VLEKP D EVR NI YA SPC TVGSAV+T++ G + VSGVDTA I+F+ IPD VV +LC E ++ CAGGLM+EH LV+PYI +I+G+IDSVMGLSK LV +LL++++
Sbjct: 5 GRPKIILGSKSATRKLIIEEMGWEAIIRTADIDEKAIGDRASDPAQLVLEIGTAKADALLPSLADAAARHGA---RLLLTGDQVVVHDGRVLEKPHDYAEVRRNIAAYALSPCRTVGSAVITELGAGGRRVSGVDTACIYFRPIPDSVVDELCKEEEILWCAGGLMIEHPLVEPYIERIEGTIDSVMGLSKPLVQRLLDELE 203
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A0G4EZT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZT5_VITBC) HSP 1 Score: 204 bits (520), Expect = 5.110e-61 Identity = 120/234 (51.28%), Postives = 157/234 (67.09%), Query Frame = 3
Query: 114 AHAFVARMSS---------SGVPVAAEGGG----RGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKR 776
AHAF+ R S+ G+ +++ G R L++GSKS TR+ I+ EMGF + SADIDE +GDR + P++LVL++ AKA ALL L A E+ +LLTGDQVVV G++ EKP D E R I+ Y +SPC TVGS VLTD+ T QVSGVDTA I K IPDD++ KL DEG ++ CAGGLM+EH LV+PYI +IDG+ DSV+GLSK+LVD LL +++
Sbjct: 25 AHAFLLRSSTHRRQHRTAAGGLIMSSAANGQTPWRPPLIVGSKSKTRRQILTEMGFDLHLESADIDEKQVGDRASCPSELVLEVAKAKAQALLDKL-ANTES---PYRILLTGDQVVVWKGRIREKPHDGAEAREFIEGYGRSPCQTVGSCVLTDLHTRTQVSGVDTATIHIKPIPDDIIQKLIDEGDILHCAGGLMIEHPLVEPYIERIDGAFDSVLGLSKALVDSLLIDLRQ 254
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A6V1TL15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TL15_HETAK) HSP 1 Score: 203 bits (516), Expect = 1.370e-60 Identity = 112/200 (56.00%), Postives = 144/200 (72.00%), Query Frame = 3
Query: 183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTAD----PADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
+++LGSKSFTR+MIV+EMG PI+R ADIDE +IGDR+AD P LVL LG AKADA+L + + G LLLTGDQVVVH+G++LEKP +E R I+ YA++P TVGSAVLTD+ TG ++ GVDTA I F P +VV +L + + CAGGLMVEH LVQPY+ IDG++DSVMGLSK L + L+ ++
Sbjct: 44 KIILGSKSFTRQMIVKEMGMEPIIRVADIDEKAIGDRSADTGWDPERLVLALGNAKADAILESGLQPGDHG-----LLLTGDQVVVHEGRILEKPTSLEEARQFIEGYARAPPRTVGSAVLTDLATGRRLQGVDTATIRFAPFPPEVVDRLLADEMTLHCAGGLMVEHELVQPYLEGIDGTVDSVMGLSKRLTETLIRRM 238
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A0G4GMM6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GMM6_9ALVE) HSP 1 Score: 178 bits (451), Expect = 1.100e-50 Identity = 97/197 (49.24%), Postives = 134/197 (68.02%), Query Frame = 3
Query: 186 LVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDR-TADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQS-PCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
++LGS S TRKMI+ EMG AD+DE +IGDR P ++V LG AKAD ++ L+ E E +LL+TGDQVVV +G++LEKP +E R+ +++Y+ PC TVGS V+T++ +G QVSG+ + F IP DV+ ++ +EG V AGGLM+EH L+QPYI KIDG+ID+VMG+SK LV L+ QI
Sbjct: 23 IILGSSSATRKMIIAEMGLRYRTEIADLDERAIGDRENQSPEEIVTLLGKAKADVIMSQLKPEEEA---EGTLLITGDQVVVCEGKILEKPGSAEEARSFLQKYSAGIPCGTVGSIVVTEVASGRQVSGIQRTQTVFGGIPSDVIERIVEEGEVFHTAGGLMIEHPLLQPYIRKIDGTIDAVMGVSKMLVRDLMLQI 216
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A7S1UJX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX9_9STRA) HSP 1 Score: 176 bits (445), Expect = 5.420e-50 Identity = 114/216 (52.78%), Postives = 142/216 (65.74%), Query Frame = 3
Query: 39 EHMRSQRQSLGLITVALGSTGWLHQAHAFVARMSSSGVPVAAEGGGRGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQ-SPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALV 683
+H R QR + L ALG A A + R ++ + ++A GG+ L+LGSKS TR+ IV +MGF V +ADIDE +IGDR D +LVL++G AKA ALLP L AEA G + ++LLTGDQVVV VLEKP D DE R IKRY +PC TVGS VLTD+ TG QVSGVD+ EI FKEIPDD++ L +EG V+ CAGGLM L+
Sbjct: 34 QHPR-QRTPMRLTIAALGVA-----AVAGLRRPVATRLAMSASAGGKPFLILGSKSETRQAIVADMGFDFRVETADIDEKAIGDRAGDVRELVLEIGKAKAAALLPRL-AEAG-GEPAGTVLLTGDQVVVQGDSVLEKPRDLDEARRFIKRYVPGAPCGTVGSCVLTDLETGKQVSGVDSTEIHFKEIPDDIIDILLEEGMVLNCAGGLMCVSTLL 241
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A250WYZ0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYZ0_9CHLO) HSP 1 Score: 174 bits (440), Expect = 1.530e-49 Identity = 102/205 (49.76%), Postives = 135/205 (65.85%), Query Frame = 3
Query: 183 QLVLGSKSFTRKMIVEEM----GFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAET-GALSTS-------LLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLL 761
+++LGS S +RK I++++ GF V++ADIDE +I R DP LVL LG AK DA+L L AE T G++S+S L+T DQVVVH G++LEKP + +E R I+ Y +SP TVGS V T ++TG VD + I IP++V+TKL +EG M CAGGLM+EH LV PYI KI+G+ D V GLSK+LV KLL
Sbjct: 10 KIILGSASSSRKKIMDDLASQYGFNYTVKTADIDEKAI--RFQDPHQLVLALGHAKRDAILSKLAAETSTSGSISSSEDHNTNAYLITCDQVVVHGGRILEKPENENECREFIRGYGESPASTVGSVVCTSLSTGRSYEEVDVSHIHIATIPEEVITKLVEEGACMWCAGGLMIEHPLVSPYIQKIEGTEDGVRGLSKALVTKLL 212
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A7S2ZRT4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRT4_9RHOD) HSP 1 Score: 173 bits (439), Expect = 3.000e-49 Identity = 103/214 (48.13%), Postives = 136/214 (63.55%), Query Frame = 3
Query: 183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKRPSRRRPMKSA*LGKTV 824
+L+LGS S +RK I+ EMG V ADIDE +I R DPA LV LG KADA+L + + LLTGDQVVVH+G++LEKP D E R I+ Y ++P TVGS V+T++ TG + +DTAE++F EIP +V+ KL +EG V CAGGL VE LV Y+ I GS+DSVMGLSK++V++LL ++ M+SA K V
Sbjct: 32 KLILGSGSASRKEILGEMGLEFEVLKADIDERAI--RHEDPATLVSILGNKKADAILERMNSHGVPEYEGEVFLLTGDQVVVHNGKILEKPLDEKEARTFIEGYNRAPARTVGSIVITNVKTGERFESLDTAEVYFHEIPGEVIDKLIEEGEVFYCAGGLKVEDPLVSRYVDHIAGSMDSVMGLSKAIVEQLL--------KKAMESASAAKVV 235
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A2R6XTF4_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XTF4_MARPO) HSP 1 Score: 172 bits (436), Expect = 3.640e-49 Identity = 96/202 (47.52%), Postives = 137/202 (67.82%), Query Frame = 3
Query: 183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRA-EAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSK----SLVDKLLEQIK 773
+++LGS S TR+ I++EMG + +ADIDE+SI R P DLV+ L AKA A+L L E++ + +LL+T DQVVVH+G +LEKP +E R I+ Y++SP TVG+ ++T+++TG GVDTAEI+F IP+ V+T L +EG+V AGGL+VEH LV P + + G+IDSVMGL K SL+D+ +E+ K
Sbjct: 8 KIILGSSSQTRRAIMKEMGLEFEILTADIDESSI--RREKPEDLVMALAEAKAQAILARLATKESDADSAQQTLLITADQVVVHEGNILEKPRTSEEARRFIEGYSRSPARTVGAVLVTNLSTGVSKGGVDTAEIYFHSIPEHVITTLIEEGSVFWAAGGLLVEHPLVSPLVNAMVGTIDSVMGLPKELTLSLIDEAVERTK 207
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: UPI00090146E5 (maf-like protein DDB_G0281937 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00090146E5) HSP 1 Score: 171 bits (432), Expect = 1.280e-48 Identity = 88/196 (44.90%), Postives = 130/196 (66.33%), Query Frame = 3
Query: 183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
+L+LGS S R+ ++ EMG+ I SADIDE +I R P DLV+ L AKA+A++P L + LL+T DQVVV++G + EKP +++E R IK Y+ T+ S ++T++ TG + +D EI+F EIP+DV+ KL +EGTV+ AGGL++EH L+QPYI ++ G+ DSVMGL K+L KL+ ++
Sbjct: 9 KLILGSASAPRRQVLAEMGYEFITMSADIDEKAI--RKEKPEDLVMALAEAKAEAIIPRLNIDESMEDAEPMLLITCDQVVVYEGMIREKPENKEEAREFIKDYSNGQAATISSVLVTNLKTGKKRGELDKVEIYFHEIPEDVIDKLIEEGTVLYVAGGLLIEHPLIQPYIKRVAGATDSVMGLPKALTQKLITEV 202 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig89.16417.1 >prot_C-linearis_contig89.16417.1 ID=prot_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp MRSQRQSLGLITVALGSTGWLHQAHAFVARMSSSGVPVAAEGGGRGQLVLback to top mRNA from alignment at C-linearis_contig89:374463..376988+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig89.16417.1 ID=mRNA_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2526bp|location=Sequence derived from alignment at C-linearis_contig89:374463..376988+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig89:374463..376988+ >mRNA_C-linearis_contig89.16417.1 ID=mRNA_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig89:374463..376988+ (Chordaria linearis ClinC8C monoicous)back to top |