mRNA_C-linearis_contig89.16417.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16417.1
Unique NamemRNA_C-linearis_contig89.16417.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.750e-103
Identity = 158/200 (79.00%), Postives = 182/200 (91.00%), Query Frame = 3
Query:  177 RGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKR 776
            +GQ++LGSKSFTRKMI+EEMGF PIVRSADI+EA+IGDRTADPADLVLQLGLAKA+ALLPAL+AEA+ G LSTS LLTGDQVVVHDG++LEKPAD DEVR NI  YA+SPC TVGSAVLTDI+TG Q SGVDTAEIFFKE+P+ VVTKLC EGTV+ CAGGLMVEH LV+P+I +IDGS+DSVMGLSK+LV +LLE+ K+
Sbjct:   11 QGQIILGSKSFTRKMIIEEMGFVPIVRSADINEAAIGDRTADPADLVLQLGLAKAEALLPALKAEADRGELSTSWLLTGDQVVVHDGRILEKPADEDEVRRNIASYARSPCRTVGSAVLTDISTGQQFSGVDTAEIFFKEVPESVVTKLCGEGTVLQCAGGLMVEHPLVEPFIARIDGSMDSVMGLSKALVLELLEKHKQ 210          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA)

HSP 1 Score: 239 bits (609), Expect = 3.310e-75
Identity = 128/202 (63.37%), Postives = 161/202 (79.70%), Query Frame = 3
Query:  174 GRGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALR-AEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQ-VSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIK 773
            GR +++LGSKS TRK+I+EEMG+  I+R+ADIDE +IGDR +DPA LVL++G AKADALLP+L  A A  GA    LLLTGDQVVVHDG+VLEKP D  EVR NI  YA SPC TVGSAV+T++  G + VSGVDTA I+F+ IPD VV +LC E  ++ CAGGLM+EH LV+PYI +I+G+IDSVMGLSK LV +LL++++
Sbjct:    5 GRPKIILGSKSATRKLIIEEMGWEAIIRTADIDEKAIGDRASDPAQLVLEIGTAKADALLPSLADAAARHGA---RLLLTGDQVVVHDGRVLEKPHDYAEVRRNIAAYALSPCRTVGSAVITELGAGGRRVSGVDTACIYFRPIPDSVVDELCKEEEILWCAGGLMIEHPLVEPYIERIEGTIDSVMGLSKPLVQRLLDELE 203          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A0G4EZT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZT5_VITBC)

HSP 1 Score: 204 bits (520), Expect = 5.110e-61
Identity = 120/234 (51.28%), Postives = 157/234 (67.09%), Query Frame = 3
Query:  114 AHAFVARMSS---------SGVPVAAEGGG----RGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKR 776
            AHAF+ R S+          G+ +++   G    R  L++GSKS TR+ I+ EMGF   + SADIDE  +GDR + P++LVL++  AKA ALL  L A  E+      +LLTGDQVVV  G++ EKP D  E R  I+ Y +SPC TVGS VLTD+ T  QVSGVDTA I  K IPDD++ KL DEG ++ CAGGLM+EH LV+PYI +IDG+ DSV+GLSK+LVD LL  +++
Sbjct:   25 AHAFLLRSSTHRRQHRTAAGGLIMSSAANGQTPWRPPLIVGSKSKTRRQILTEMGFDLHLESADIDEKQVGDRASCPSELVLEVAKAKAQALLDKL-ANTES---PYRILLTGDQVVVWKGRIREKPHDGAEAREFIEGYGRSPCQTVGSCVLTDLHTRTQVSGVDTATIHIKPIPDDIIQKLIDEGDILHCAGGLMIEHPLVEPYIERIDGAFDSVLGLSKALVDSLLIDLRQ 254          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A6V1TL15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TL15_HETAK)

HSP 1 Score: 203 bits (516), Expect = 1.370e-60
Identity = 112/200 (56.00%), Postives = 144/200 (72.00%), Query Frame = 3
Query:  183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTAD----PADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
            +++LGSKSFTR+MIV+EMG  PI+R ADIDE +IGDR+AD    P  LVL LG AKADA+L +     + G     LLLTGDQVVVH+G++LEKP   +E R  I+ YA++P  TVGSAVLTD+ TG ++ GVDTA I F   P +VV +L  +   + CAGGLMVEH LVQPY+  IDG++DSVMGLSK L + L+ ++
Sbjct:   44 KIILGSKSFTRQMIVKEMGMEPIIRVADIDEKAIGDRSADTGWDPERLVLALGNAKADAILESGLQPGDHG-----LLLTGDQVVVHEGRILEKPTSLEEARQFIEGYARAPPRTVGSAVLTDLATGRRLQGVDTATIRFAPFPPEVVDRLLADEMTLHCAGGLMVEHELVQPYLEGIDGTVDSVMGLSKRLTETLIRRM 238          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A0G4GMM6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GMM6_9ALVE)

HSP 1 Score: 178 bits (451), Expect = 1.100e-50
Identity = 97/197 (49.24%), Postives = 134/197 (68.02%), Query Frame = 3
Query:  186 LVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDR-TADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQS-PCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
            ++LGS S TRKMI+ EMG       AD+DE +IGDR    P ++V  LG AKAD ++  L+ E E      +LL+TGDQVVV +G++LEKP   +E R+ +++Y+   PC TVGS V+T++ +G QVSG+   +  F  IP DV+ ++ +EG V   AGGLM+EH L+QPYI KIDG+ID+VMG+SK LV  L+ QI
Sbjct:   23 IILGSSSATRKMIIAEMGLRYRTEIADLDERAIGDRENQSPEEIVTLLGKAKADVIMSQLKPEEEA---EGTLLITGDQVVVCEGKILEKPGSAEEARSFLQKYSAGIPCGTVGSIVVTEVASGRQVSGIQRTQTVFGGIPSDVIERIVEEGEVFHTAGGLMIEHPLLQPYIRKIDGTIDAVMGVSKMLVRDLMLQI 216          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A7S1UJX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.420e-50
Identity = 114/216 (52.78%), Postives = 142/216 (65.74%), Query Frame = 3
Query:   39 EHMRSQRQSLGLITVALGSTGWLHQAHAFVARMSSSGVPVAAEGGGRGQLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQ-SPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALV 683
            +H R QR  + L   ALG       A A + R  ++ + ++A  GG+  L+LGSKS TR+ IV +MGF   V +ADIDE +IGDR  D  +LVL++G AKA ALLP L AEA  G  + ++LLTGDQVVV    VLEKP D DE R  IKRY   +PC TVGS VLTD+ TG QVSGVD+ EI FKEIPDD++  L +EG V+ CAGGLM    L+
Sbjct:   34 QHPR-QRTPMRLTIAALGVA-----AVAGLRRPVATRLAMSASAGGKPFLILGSKSETRQAIVADMGFDFRVETADIDEKAIGDRAGDVRELVLEIGKAKAAALLPRL-AEAG-GEPAGTVLLTGDQVVVQGDSVLEKPRDLDEARRFIKRYVPGAPCGTVGSCVLTDLETGKQVSGVDSTEIHFKEIPDDIIDILLEEGMVLNCAGGLMCVSTLL 241          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A250WYZ0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYZ0_9CHLO)

HSP 1 Score: 174 bits (440), Expect = 1.530e-49
Identity = 102/205 (49.76%), Postives = 135/205 (65.85%), Query Frame = 3
Query:  183 QLVLGSKSFTRKMIVEEM----GFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAET-GALSTS-------LLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLL 761
            +++LGS S +RK I++++    GF   V++ADIDE +I  R  DP  LVL LG AK DA+L  L AE  T G++S+S        L+T DQVVVH G++LEKP + +E R  I+ Y +SP  TVGS V T ++TG     VD + I    IP++V+TKL +EG  M CAGGLM+EH LV PYI KI+G+ D V GLSK+LV KLL
Sbjct:   10 KIILGSASSSRKKIMDDLASQYGFNYTVKTADIDEKAI--RFQDPHQLVLALGHAKRDAILSKLAAETSTSGSISSSEDHNTNAYLITCDQVVVHGGRILEKPENENECREFIRGYGESPASTVGSVVCTSLSTGRSYEEVDVSHIHIATIPEEVITKLVEEGACMWCAGGLMIEHPLVSPYIQKIEGTEDGVRGLSKALVTKLL 212          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A7S2ZRT4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRT4_9RHOD)

HSP 1 Score: 173 bits (439), Expect = 3.000e-49
Identity = 103/214 (48.13%), Postives = 136/214 (63.55%), Query Frame = 3
Query:  183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKRPSRRRPMKSA*LGKTV 824
            +L+LGS S +RK I+ EMG    V  ADIDE +I  R  DPA LV  LG  KADA+L  + +           LLTGDQVVVH+G++LEKP D  E R  I+ Y ++P  TVGS V+T++ TG +   +DTAE++F EIP +V+ KL +EG V  CAGGL VE  LV  Y+  I GS+DSVMGLSK++V++LL        ++ M+SA   K V
Sbjct:   32 KLILGSGSASRKEILGEMGLEFEVLKADIDERAI--RHEDPATLVSILGNKKADAILERMNSHGVPEYEGEVFLLTGDQVVVHNGKILEKPLDEKEARTFIEGYNRAPARTVGSIVITNVKTGERFESLDTAEVYFHEIPGEVIDKLIEEGEVFYCAGGLKVEDPLVSRYVDHIAGSMDSVMGLSKAIVEQLL--------KKAMESASAAKVV 235          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: A0A2R6XTF4_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XTF4_MARPO)

HSP 1 Score: 172 bits (436), Expect = 3.640e-49
Identity = 96/202 (47.52%), Postives = 137/202 (67.82%), Query Frame = 3
Query:  183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRA-EAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSK----SLVDKLLEQIK 773
            +++LGS S TR+ I++EMG    + +ADIDE+SI  R   P DLV+ L  AKA A+L  L   E++  +   +LL+T DQVVVH+G +LEKP   +E R  I+ Y++SP  TVG+ ++T+++TG    GVDTAEI+F  IP+ V+T L +EG+V   AGGL+VEH LV P +  + G+IDSVMGL K    SL+D+ +E+ K
Sbjct:    8 KIILGSSSQTRRAIMKEMGLEFEILTADIDESSI--RREKPEDLVMALAEAKAQAILARLATKESDADSAQQTLLITADQVVVHEGNILEKPRTSEEARRFIEGYSRSPARTVGAVLVTNLSTGVSKGGVDTAEIYFHSIPEHVITTLIEEGSVFWAAGGLLVEHPLVSPLVNAMVGTIDSVMGLPKELTLSLIDEAVERTK 207          
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Match: UPI00090146E5 (maf-like protein DDB_G0281937 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00090146E5)

HSP 1 Score: 171 bits (432), Expect = 1.280e-48
Identity = 88/196 (44.90%), Postives = 130/196 (66.33%), Query Frame = 3
Query:  183 QLVLGSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKADALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRYAQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMMCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQI 770
            +L+LGS S  R+ ++ EMG+  I  SADIDE +I  R   P DLV+ L  AKA+A++P L  +         LL+T DQVVV++G + EKP +++E R  IK Y+     T+ S ++T++ TG +   +D  EI+F EIP+DV+ KL +EGTV+  AGGL++EH L+QPYI ++ G+ DSVMGL K+L  KL+ ++
Sbjct:    9 KLILGSASAPRRQVLAEMGYEFITMSADIDEKAI--RKEKPEDLVMALAEAKAEAIIPRLNIDESMEDAEPMLLITCDQVVVYEGMIREKPENKEEAREFIKDYSNGQAATISSVLVTNLKTGKKRGELDKVEIYFHEIPEDVIDKLIEEGTVLYVAGGLLIEHPLIQPYIKRVAGATDSVMGLPKALTQKLITEV 202          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH84_ECTSI1.750e-10379.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPK2_9STRA3.310e-7563.37Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A0G4EZT5_VITBC5.110e-6151.28Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6V1TL15_HETAK1.370e-6056.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GMM6_9ALVE1.100e-5049.24Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S1UJX9_9STRA5.420e-5052.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A250WYZ0_9CHLO1.530e-4949.76Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S2ZRT4_9RHOD3.000e-4948.13Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2R6XTF4_MARPO3.640e-4947.52Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
UPI00090146E51.280e-4844.90maf-like protein DDB_G0281937 isoform X1 n=3 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:374463..376988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue2e-82
Seed eggNOG ortholog2880.D8LH84
Preferred nameMAF
KEGG koko:K06287
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
Ec32 ortholog descriptionInosine triphosphate pyrophosphatase-like
Ec32 orthologEc-24_000950.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons5
Model size983
Cds size765
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.2581003-UTR-C-linearis_contig89:374462..3745061622930694.2581003-UTR-C-linearis_contig89:374462..374506Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 374463..374506 +
1690881200.8335505-UTR-C-linearis_contig89:374462..3745061690881200.8335505-UTR-C-linearis_contig89:374462..374506Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 374463..374506 +
1622930694.3766172-UTR-C-linearis_contig89:376814..3769881622930694.3766172-UTR-C-linearis_contig89:376814..376988Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 376815..376988 +
1690881200.9027638-UTR-C-linearis_contig89:376814..3769881690881200.9027638-UTR-C-linearis_contig89:376814..376988Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 376815..376988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.278463-CDS-C-linearis_contig89:374506..3747181622930694.278463-CDS-C-linearis_contig89:374506..374718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 374507..374718 +
1690881200.847132-CDS-C-linearis_contig89:374506..3747181690881200.847132-CDS-C-linearis_contig89:374506..374718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 374507..374718 +
1622930694.2989435-CDS-C-linearis_contig89:374987..3751511622930694.2989435-CDS-C-linearis_contig89:374987..375151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 374988..375151 +
1690881200.857671-CDS-C-linearis_contig89:374987..3751511690881200.857671-CDS-C-linearis_contig89:374987..375151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 374988..375151 +
1622930694.3209434-CDS-C-linearis_contig89:375724..3758011622930694.3209434-CDS-C-linearis_contig89:375724..375801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 375725..375801 +
1690881200.8677468-CDS-C-linearis_contig89:375724..3758011690881200.8677468-CDS-C-linearis_contig89:375724..375801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 375725..375801 +
1622930694.3412101-CDS-C-linearis_contig89:376320..3764191622930694.3412101-CDS-C-linearis_contig89:376320..376419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 376321..376419 +
1690881200.8784304-CDS-C-linearis_contig89:376320..3764191690881200.8784304-CDS-C-linearis_contig89:376320..376419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 376321..376419 +
1622930694.3598344-CDS-C-linearis_contig89:376601..3768141622930694.3598344-CDS-C-linearis_contig89:376601..376814Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 376602..376814 +
1690881200.8924332-CDS-C-linearis_contig89:376601..3768141690881200.8924332-CDS-C-linearis_contig89:376601..376814Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 376602..376814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16417.1prot_C-linearis_contig89.16417.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 374507..376814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16417.1

>prot_C-linearis_contig89.16417.1 ID=prot_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MRSQRQSLGLITVALGSTGWLHQAHAFVARMSSSGVPVAAEGGGRGQLVL
GSKSFTRKMIVEEMGFTPIVRSADIDEASIGDRTADPADLVLQLGLAKAD
ALLPALRAEAETGALSTSLLLTGDQVVVHDGQVLEKPADRDEVRANIKRY
AQSPCLTVGSAVLTDITTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVM
MCAGGLMVEHALVQPYITKIDGSIDSVMGLSKSLVDKLLEQIKRPSRRRP
MKSA*
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mRNA from alignment at C-linearis_contig89:374463..376988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16417.1 ID=mRNA_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2526bp|location=Sequence derived from alignment at C-linearis_contig89:374463..376988+ (Chordaria linearis ClinC8C monoicous)
GCCTCCTCCGCCCCCTCTCAGCATTCCAGTGCTGCTGTGAGCATATGCGT TCGCAACGGCAGTCCTTGGGTTTGATCACGGTTGCCCTGGGATCGACAGG TTGGCTCCACCAAGCGCATGCATTCGTGGCGAGGATGTCCTCGTCCGGCG TGCCTGTGGCTGCGGAGGGTGGTGGGAGAGGTCAACTAGTGTTGGGCTCC AAGTCGTTTACGAGGAAGATGATAGTGGAGGAGATGGGCTTCACACCTAT CGTTAGGTGAGACTACGCCCGGTGTTCGTGAAGCTGAAAATCGAATGAGA CGCATGTCTCGCAGCGCCATGGCATACAGATGCCTGTGGAGGTAGCCCAC GAACACGTGTCTGTGTGTGTATTGCGTTTTTTGTTTTTTTGTCCACCAAA CCATAGGCATGCACAGGTGGAGCACATACATACTAAGCACAAGCACGCAG CATGCATACAGAGTAGTTGAGCTCTTAGGCTCGCATCCTGAGCACCACCG TCTTGTCGATAAAACATGCAACCAGGTCTGCAGACATCGACGAGGCGTCG ATTGGTGACCGCACTGCGGACCCAGCTGACCTCGTGCTGCAACTTGGGCT GGCGAAGGCGGATGCGCTGCTGCCAGCGCTGAGAGCTGAGGCTGAGACTG GGGCATTGAGTACTTCTTTGCTTCTCACAGGAGACCAAGGTATTTTTTCA TGGAATTGCCCCGCAGGAGCAGGAAGAGCAAGCAATCTACGGCGGTAGAT ACAGCAGCAGTTTGCCGTTGTAATTTCAACACACGCGTGGTCACTATTCC TCCTGCTGTAGTCGCACCCTCCGGTGATGCCGGTCGCACGACTCTCTCCC GCACAACTAACCATTATCTTCATAGCTTCCTTCAGGCAGGTGCAAGAGAG TCTCCGTCTTTACCTTGATGTCAACAAAACCCAGGCCACTTCTTCTCAAT GTTTGAGAGTTCCCGTGAAGAACAACGCTGCGGGGTGGCAGCAGTAGTAG TGTTCCCGACCAATAAGCTTCTACGGGAAGTCGCGGGACGTCTTGGCACC GTGGTAGCCTCTCGTTGGACATTGCTCCCCTTCAACGCTCGGCACTCACT ACCACTGCGCAGTGTTCTATCCCATCCCTGTGCAGTAAATTACCCACAAC TTGGCCTGACAAGTAGCCGATGACCCACATCTACTTCGTGCATCTTCGAG GGGTAATCGTGATTCTCCCTGCGTCACCGCCTATTCCCGCGGCTGAAAAT TTTGTTCGGCAGTTGTCGTCCACGACGGGCAGGTTCTTGAAAAGCCCGCA GACCGAGACGAGGTTCGAGCGAACATAAAAAGATACGCGGTAAGCAAGCT GCGTTTCCTTTTTTTTGCCTGGTTCGTATTTCGTCCTTGGATTGGCGTGG CTTTCAAAACGCCAGCGGCATCTTGAGCAAAAACCTCAACCTTGTGATGG ATGCTTTTCTGCACGTGCGTTATCGAGGGCCCTTTCTCGGCGGGTACGTT CGCTTGGCATCCAATATCCAACCAGCGTAGGGTGGAAGTATCACTTTCAA TAATTTTTCATACGAAGTCAGAGAATTCCTGCCGTTCCAGTAGAGGTGCC TCAAGGTAGCGTTTCCCCCTCCCAGCGGCACTAACTATTCTGTCGTTCCG AGTCGTGATGACAGCAGTGCCAACGTTACCACCCACGGCTTGCCAGCTTC TAAATCGGTGGTGCCTGTTGCCTTGTACATATACTTCGTATGCGGCTTCC AACACCGCAACCTTTTCACTACCGCTGTCTTGTCACCGCTGCGCTGTTGC CCGCTCTCCGACATCTGTTGCCTTGCTGCTCAAACACGCCTGGTAAACAT TTATGCAGCAATCGCCGTGCCTAACTGTCGGTTCGGCTGTGCTCACGGAT ATCACAACGGGTGCCCAAGTGTCGGGGGTTGACACAGCAGAAATATTTTT CAAAGAGGTGAGACAGTTGGTCATGGGTTTTGTTATCCCCAGGCTCCAGA GCCTCAGAACTACCGCAGAGCGATCGCATGTCTTGACAACCACTGCACGG TTTGGCAACCGACTTTGCCGCGCCTAACACGCGTCGTAGAGTGCTCCGTG TTTTTTATATACCCCCCCCCCCTGCCTCCGTTGCTCCAGATTCCGGACGA CGTGGTGACGAAGCTCTGCGACGAGGGCACCGTGATGATGTGCGCGGGGG GACTAATGGTGGAGCATGCGTTGGTCCAGCCCTACATCACCAAAATAGAC GGCTCCATAGATTCTGTGATGGGCCTCTCGAAATCCTTGGTAGACAAGTT GCTCGAGCAGATCAAGCGGCCATCTCGACGTCGACCAATGAAATCTGCAT AGTTGGGGAAAACCGTGGTCTCTTGGTTTATTTGCGGCATCAAGGAGTGC TCCGTATATGTTTGGGTGAGACTTCAGACTTTCCCGACGAGGACGTACCA TATGCCATACGTTTGTGCAAAGGAAGCGTGCTGGGCATCTTTCTCTGCCC GCGGTTCAGAAGAAAGCTTGAGGCTG
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Coding sequence (CDS) from alignment at C-linearis_contig89:374463..376988+

>mRNA_C-linearis_contig89.16417.1 ID=mRNA_C-linearis_contig89.16417.1|Name=mRNA_C-linearis_contig89.16417.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig89:374463..376988+ (Chordaria linearis ClinC8C monoicous)
ATGCGTTCGCAACGGCAGTCCTTGGGTTTGATCACGGTTGCCCTGGGATC
GACAGGTTGGCTCCACCAAGCGCATGCATTCGTGGCGAGGATGTCCTCGT
CCGGCGTGCCTGTGGCTGCGGAGGGTGGTGGGAGAGGTCAACTAGTGTTG
GGCTCCAAGTCGTTTACGAGGAAGATGATAGTGGAGGAGATGGGCTTCAC
ACCTATCGTTAGATGCGTTCGCAACGGCAGTCCTTGGGTTTGATCACGGT
TGCCCTGGGATCGACAGGTTGGCTCCACCAAGCGCATGCATTCGTGGCGA
GGATGTCCTCGTCCGGCGTGCCTGTGGCTGCGGAGGGTGGTGGGAGAGGT
CAACTAGTGTTGGGCTCCAAGTCGTTTACGAGGAAGATGATAGTGGAGGA
GATGGGCTTCACACCTATCGTTAGGTCTGCAGACATCGACGAGGCGTCGA
TTGGTGACCGCACTGCGGACCCAGCTGACCTCGTGCTGCAACTTGGGCTG
GCGAAGGCGGATGCGCTGCTGCCAGCGCTGAGAGCTGAGGCTGAGACTGG
GGCATTGAGTACTTCTTTGCTTCTCACAGGAGACCAAGGTCTGCAGACAT
CGACGAGGCGTCGATTGGTGACCGCACTGCGGACCCAGCTGACCTCGTGC
TGCAACTTGGGCTGGCGAAGGCGGATGCGCTGCTGCCAGCGCTGAGAGCT
GAGGCTGAGACTGGGGCATTGAGTACTTCTTTGCTTCTCACAGGAGACCA
AGTTGTCGTCCACGACGGGCAGGTTCTTGAAAAGCCCGCAGACCGAGACG
AGGTTCGAGCGAACATAAAAAGATACGCGTTGTCGTCCACGACGGGCAGG
TTCTTGAAAAGCCCGCAGACCGAGACGAGGTTCGAGCGAACATAAAAAGA
TACGCGCAATCGCCGTGCCTAACTGTCGGTTCGGCTGTGCTCACGGATAT
CACAACGGGTGCCCAAGTGTCGGGGGTTGACACAGCAGAAATATTTTTCA
AAGAGCAATCGCCGTGCCTAACTGTCGGTTCGGCTGTGCTCACGGATATC
ACAACGGGTGCCCAAGTGTCGGGGGTTGACACAGCAGAAATATTTTTCAA
AGAGATTCCGGACGACGTGGTGACGAAGCTCTGCGACGAGGGCACCGTGA
TGATGTGCGCGGGGGGACTAATGGTGGAGCATGCGTTGGTCCAGCCCTAC
ATCACCAAAATAGACGGCTCCATAGATTCTGTGATGGGCCTCTCGAAATC
CTTGGTAGACAAGTTGCTCGAGCAGATCAAGCGGCCATCTCGACGTCGAC
CAATGAAATCTGCATAGATTCCGGACGACGTGGTGACGAAGCTCTGCGAC
GAGGGCACCGTGATGATGTGCGCGGGGGGACTAATGGTGGAGCATGCGTT
GGTCCAGCCCTACATCACCAAAATAGACGGCTCCATAGATTCTGTGATGG
GCCTCTCGAAATCCTTGGTAGACAAGTTGCTCGAGCAGATCAAGCGGCCA
TCTCGACGTCGACCAATGAAATCTGCATAG
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