mRNA_C-linearis_contig89.16416.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16416.1
Unique NamemRNA_C-linearis_contig89.16416.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A6H5KRN7_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRN7_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 4.390e-93
Identity = 143/215 (66.51%), Postives = 170/215 (79.07%), Query Frame = 1
Query:    1 WGGDELQHPDGWITNWAGDSPRETSDAAEADTEEII-----SAKDKKARRDFYADFTERALAKTCGEYGEAKIDVEEDDLC-VKQEQVLAWRRWVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLPGVEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEFPVEGLFVSSMSCPQM 627
            W G+ELQ+ DGW TNWAGDSP++    A A    I+     SAK+K+ARR+FYA+FTERALAK CG+Y   K  +E+D +  V+ E +LAWR WVDLRHRVP ASARLFCCPWAGGNSL FERW E+LPGVEVVPLLLPGRLTRA E ++ NL ++V + VEA+CGL+LL H+DIPYF+ G EFGALVAFE CRRVQ EFPV+ L VSSMSCPQ+
Sbjct:   17 WDGEELQYIDGWATNWAGDSPKDPEKEAAAAVGTIMMADTMSAKEKQARRNFYANFTERALAK-CGDYSGEKNIIEQDGVDRVEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLMFERWSEELPGVEVVPLLLPGRLTRAREDAMTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHEFGALVAFETCRRVQDEFPVKALIVSSMSCPQV 230          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A7Y8H511_9BACT (Thioesterase n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y8H511_9BACT)

HSP 1 Score: 139 bits (351), Expect = 8.790e-36
Identity = 91/240 (37.92%), Postives = 134/240 (55.83%), Query Frame = 1
Query:  259 RWVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLP-GVEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEFPVE--GLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGEQKM-ENWAMESSSTESDSILFEGGPFFFL 966
            +WV      P AS +LFC P+AGG+S  F RWPE LP  VEV P+ LPGR  R  E  I NL EL+     +L G ++L H + P+   G   GAL++FE+ R ++ +F +E   L+VS+ S P +  ERE     +   E F      +E  +LR    MP ELL N ++++I  P+  AD +  +TY++ SG+PL C I + GG +D + ++ E +A    +T   S++   G  FFL
Sbjct:   10 KWVLYPKPKPWASRKLFCFPYAGGSSFMFRRWPEFLPEDVEVCPVELPGRGRRISEDPIDNLSELIS----SLAG-SILPHLNKPFEFFGHSMGALISFELARYLKTKFDIEVSHLYVSAQSAPHL--EREPKVTYNLPSEEF------IE--VLRSLNGMPDELLSNTEMMQIMLPILRADFAICETYQFTSGSPLNCSITAIGGAEDDKVEIAELYAWSELTTNKFSMIQIPGDHFFL 234          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: K9X7X8_9NOST (Putative thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Cylindrospermum stagnale PCC 7417 TaxID=56107 RepID=K9X7X8_9NOST)

HSP 1 Score: 131 bits (330), Expect = 8.800e-33
Identity = 90/253 (35.57%), Postives = 133/253 (52.57%), Query Frame = 1
Query:  262 WVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEF--PVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGEQKME---NWAMESSSTESDSILFEGGPFFFLDWDNEAELLRLV 1002
            W+      P A+ RLFC P+AGG +  F RWP++LP  VE+  + LPGR  R GE  I NL  L +  VE L     L H D P+ + G   GAL+ +E+ R++Q +   PV  LFVS    P ++     + LL      F  K   + SA+       P  +L++K+L+E+F PV  ADL+ ++TY +    PL+CPI + GG +D E   +    W   + S+ S  + F GG F+  +  N   LL+L+
Sbjct:    9 WIKCPQSNPQANLRLFCLPYAGGGTSIFRRWPQELPSNVELCAIDLPGRENRIGEKPISNLEILTEKLVEVL-----LQHLDKPFALFGHSMGALIVYELARKLQQKNVNPVY-LFVSGRPAPNVLELYPPLHLLPDAE--FIEKLTNIYSAI-------PDAVLKDKELMELFLPVLRADLTLVETYIHSQVEPLDCPIVALGGLEDNEASHDYLVTWREYTRSSFSVEM-FPGGHFYLNE--NRQPLLQLI 243          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: UPI001F54D030 (thioesterase domain-containing protein n=1 Tax=Planktothrix sp. FACHB-1355 TaxID=2692854 RepID=UPI001F54D030)

HSP 1 Score: 129 bits (323), Expect = 5.720e-32
Identity = 80/225 (35.56%), Postives = 124/225 (55.11%), Query Frame = 1
Query:  301 RLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQ-AEFPVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKD---GEQKMENWAMESSSTESDSILFEGGPFF 960
            RLFC P+AGGNS  +  W   LP  + V P+ LPGR  R  E +  +L EL     E     N+  + D+P+ + G   GA++ FE+CR +Q A F  E LFV++ S P  +  R+ V +     E F+ +        L +    P+E+LEN++L ++  P+  AD   ++TYEY +G+ L+CPI++FGG  D    E++++ W  ++ S E D  + EG  FF
Sbjct:    2 RLFCFPFAGGNSFTYRTWRHNLPNWINVCPVFLPGRANRINEPAFTDLHELTATIFE-----NIRDYVDLPFAVFGYSMGAIIGFELCRLLQGAGFNAEHLFVAA-SPPPPLTGRDPV-IYDLPVENFKEE--------LLKFNGTPKEILENEELFDLMLPLLRADFELVETYEYRAGSKLKCPIFAFGGSWDDEVSEEELKQWQSQTDS-EFDWAILEGNHFF 210          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: UPI001685798F (Thioesterase n=4 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001685798F)

HSP 1 Score: 128 bits (321), Expect = 2.210e-31
Identity = 89/244 (36.48%), Postives = 127/244 (52.05%), Query Frame = 1
Query:  250 AWRRWVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAE---FPVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGE---QKMENWAMESSSTESDSILFEGGPFF 960
            A+  WV      P AS RLFC P+AG  S  F  W + LP  +EV P+ LPGR TR  E+    L  LV+     L     L H D P+   G   GAL++FE+ RR++ +    P+  LFVS    PQ+      +  L +        +A +E   LRR    PQ +LEN +L+++  P+  AD +A++TY Y S  PL+CPI +FGG +D E    ++E W  ++S+  S   +F G  FF
Sbjct:    8 AFNAWVMCPKPNPQASLRLFCFPYAGAGSQIFRTWAQSLPASIEVCPIELPGRGTRIMETPCTQLEPLVETLASVL-----LPHLDKPFAFFGHSMGALLSFEIVRRLRKKSNLLPLH-LFVSGRQAPQIPDLNPPIHALPE--------SAFLEE--LRRYNGTPQAVLENAELMQLLLPILRADFAAIETYVYASEPPLDCPITAFGGFQDPEASCDQLEAWREQTSAAFS-LQMFPGDHFF 234          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A7W1KZJ3_9BACT (Thioesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1KZJ3_9BACT)

HSP 1 Score: 127 bits (319), Expect = 3.380e-31
Identity = 87/249 (34.94%), Postives = 119/249 (47.79%), Query Frame = 1
Query:  247 LAWRRWVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEFP-------VEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKD---GEQKMENWAMESSSTESDSILFEGGPFF 960
            +A   W+ L  R PGA+ RLFC P+AGG +  +  W + LP  VEV P+ LPG   R  E     +  LVQ A EAL     L + D P+   G   GALV FE+ R+++ +         V G F   +  P  IH   +  LL                A LRR   +PQE LEN +L+ +  P   AD +  +TY Y    PL CPI +FGG +D   G   +E W  ++++  S   +F G  FF
Sbjct:    5 IATAPWLALPKRNPGANMRLFCFPYAGGGAHTYRTWADNLPKTVEVCPIQLPGHGARMMEEPFIQMLALVQAAAEAL-----LPYLDKPFAFFGHSMGALVGFELARQLRRQCDLQPVHLFVSGCFAPDIPDPNPIHNLPEAELL----------------AELRRLNGVPQEALENTELMRLLLPTLRADCTVTETYTYTHEPPLNCPISAFGGLQDHLVGRTHLEAWRQQTTAFFS-LRMFPGDHFF 231          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A097PUG7_9CYAN (Anatoxin-a synthetase A thioesterase type II n=4 Tax=Cuspidothrix issatschenkoi TaxID=230752 RepID=A0A097PUG7_9CYAN)

HSP 1 Score: 127 bits (319), Expect = 3.470e-31
Identity = 86/253 (33.99%), Postives = 132/253 (52.17%), Query Frame = 1
Query:  262 WVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLP-GVEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAE--FPVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGEQKME---NWAMESSSTESDSILFEGGPFFFLDWDNEAELLRLV 1002
            WV      P A+ RLFC P+AGG +  F  W ++LP  VEV  + +PGR  R GE  I NL  L  + VE       L + D P+ + G   GAL+ +E+ R++Q +   PV  LFVS  + P +      + LL      F  K ++V +A+       P  +L++KDL+E+F PV  AD++ ++T+ +  G PL+CPI++ GG +D E   +   NW  E +       +F GG F+  +  N+  LL  +
Sbjct:    9 WVKCYQSNPEANLRLFCLPYAGGGTSVFRLWAQELPLNVEVCAIDMPGRERRMGEKPISNLESLTDILVEVF-----LQYLDKPFAIFGHSMGALIVYELSRKLQQKNISPVY-LFVSGRAAPNLPELYPPLHLLPDAE--FTEKLSKVYNAI-------PDTVLKDKDLMELFLPVLRADMTLVETHIHSQGEPLDCPIFALGGLEDKEASYDFLVNWR-ECTRGSFSVQMFPGGHFYLNE--NKQPLLEFI 243          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A4V2RBL0_9BACI (Medium-chain acyl-[acyl-carrier-protein] hydrolase n=2 Tax=Mesobacillus foraminis TaxID=279826 RepID=A0A4V2RBL0_9BACI)

HSP 1 Score: 127 bits (318), Expect = 5.760e-31
Identity = 77/243 (31.69%), Postives = 137/243 (56.38%), Query Frame = 1
Query:  301 RLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQA---EFPVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDG---EQKMENWAMESSSTESDSILFEGGPFFFLDWDNEAELLRLVRD 1008
            RL C P+AGG++LA+ +W + L   +EV P+ LPGR  R  E  IR LP+L+ L  + L       +  IPY   G   GAL+++E+ + +     + P++ LF+S    PQ+  ++E+ T      E             LR+    P+E+L+NK+++++F P+  AD   +DTY+++  +PL CPI +FGG  D    ++ +++W  E +++E +  LF G  F+   +++E +LL+ +++
Sbjct:   22 RLLCFPYAGGSALAYRQWTQSLADEIEVCPIQLPGRENRMAEEPIRALPKLITLLADEL---EPAINSSIPYAFFGHSMGALISYELAKEINKRSWKMPIQ-LFLSGKRPPQL-SKKERPTYNLPEKEFI---------DELRKMNGTPEEVLDNKEIMDLFLPIIRADFEIVDTYQFDLSSPLSCPITAFGGLNDPLTQKEDLDSWK-ELTTSEFNIHLFPGDHFYL--FEHEKKLLKAIQE 247          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A1Y0RIE3_9CYAN (Putative thioesterase n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RIE3_9CYAN)

HSP 1 Score: 126 bits (317), Expect = 6.790e-31
Identity = 85/252 (33.73%), Postives = 129/252 (51.19%), Query Frame = 1
Query:  262 WVDLRHRVPGASARLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEF--PVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGEQKMENWAMESSSTESDSI--LFEGGPFFFLDWDNEAELLRLV 1002
            W+      P A+ RLFC P+AGG +  F  WP +LP  VE+  + LPGR  R GE  I NL  L +  VEA      L H D P+ + G   GAL+ +E+ R++Q +   PV  LFVS    P +      + +L      F  K  ++ SA+       P  +L++K+L+++F PV  AD++ ++TY +    PL+CPI + GG +D E   +N       T S  +  +F GG F+  +  N   LL+ +
Sbjct:    9 WIKCSQPNPQANLRLFCLPYAGGGTSIFRLWPRELPSNVELCAIELPGRENRIGEKPISNLEILTEKLVEAF-----LQHLDKPFALFGHSMGALIVYELARKLQQKNVNPVY-LFVSGRPAPNVPELYPPLHVLPDAE--FIEKLNDIYSAI-------PDTVLKDKELMQLFLPVLRADMTLVETYVFSEVEPLDCPILALGGLEDHEASHDNLMTWREHTRSSFLVQMFSGGHFYLNE--NRQPLLQFI 243          
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Match: A0A8J6QXK5_9CYAN (Thioesterase n=2 Tax=Trichocoleus sp. FACHB-46 TaxID=2692871 RepID=A0A8J6QXK5_9CYAN)

HSP 1 Score: 125 bits (314), Expect = 2.790e-30
Identity = 94/253 (37.15%), Postives = 129/253 (50.99%), Query Frame = 1
Query:  280 RVPGASARLFCCPWAGGNSLAFERWPEQLPG-VEVVPLLLPGRLTRAGESSIRNLPELVQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAE---FPVEGLFVSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLENKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKD---GEQKMENWAMESSSTESDSILFEGGPFFFLDWDNEAELLRLVRDRCT 1017
            R P A  RLFC P+AGGNS  F  W   LP  VE+  + +PG  TR  E  +  +PELV     A    +LL H D P+   G   GA V+FE+ R +QA     PV  LFVS    PQ+ + R     LHQ  EV          A LRR    P+ +LE+ +L+E+  P+  AD + L+TY Y   TPL C I +FGG +D     + ++ W  ++S++ S  +L   G  FF+  D +  LL L+    T
Sbjct:   14 RNPQARLRLFCFPYAGGNSFIFRPWLNHLPSDVELGAIEIPGHGTRMAEPLLTRMPELV-----AAIASDLLPHLDKPFAFFGHSMGAWVSFEVARWLQAHEHLCPVH-LFVSGSRAPQLPNLRSP---LHQLPEV-------EFVAALRRLQGTPEAVLEHTELMELMLPILQADFTVLETYTYSPQTPLPCSITAFGGLQDIDVSPEMLQAWQTQTSASFSHRML--PGNHFFIHSD-QTLLLELLAQELT 247          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRN7_9PHAE4.390e-9366.51Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A7Y8H511_9BACT8.790e-3637.92Thioesterase n=1 Tax=Ignavibacteriaceae bacterium ... [more]
K9X7X8_9NOST8.800e-3335.57Putative thioesterase involved in non-ribosomal pe... [more]
UPI001F54D0305.720e-3235.56thioesterase domain-containing protein n=1 Tax=Pla... [more]
UPI001685798F2.210e-3136.48Thioesterase n=4 Tax=unclassified Microcoleus TaxI... [more]
A0A7W1KZJ3_9BACT3.380e-3134.94Thioesterase n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A097PUG7_9CYAN3.470e-3133.99Anatoxin-a synthetase A thioesterase type II n=4 T... [more]
A0A4V2RBL0_9BACI5.760e-3131.69Medium-chain acyl-[acyl-carrier-protein] hydrolase... [more]
A0A1Y0RIE3_9CYAN6.790e-3133.73Putative thioesterase n=1 Tax=Nostocales cyanobact... [more]
A0A8J6QXK5_9CYAN2.790e-3037.15Thioesterase n=2 Tax=Trichocoleus sp. FACHB-46 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:371461..374131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score135.6
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog56107.Cylst_6218
Preferred namepteH
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thioesterase involved in non-ribosomal peptide biosynthesis
EggNOG OGs1G16V@1117,1HIUI@1161,COG3208@1,COG3208@2
Ec32 ortholog descriptionThioesterase
Ec32 orthologEc-24_000940.1
EC3.1.2.21
COG Functional cat.Q
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons7
Model size1017
Cds size1017
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.1137934-CDS-C-linearis_contig89:371460..3714961622930694.1137934-CDS-C-linearis_contig89:371460..371496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 371461..371496 -
1690881200.753592-CDS-C-linearis_contig89:371460..3714961690881200.753592-CDS-C-linearis_contig89:371460..371496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 371461..371496 -
1622930694.1271548-CDS-C-linearis_contig89:371806..3719871622930694.1271548-CDS-C-linearis_contig89:371806..371987Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 371807..371987 -
1690881200.7657406-CDS-C-linearis_contig89:371806..3719871690881200.7657406-CDS-C-linearis_contig89:371806..371987Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 371807..371987 -
1622930694.13919-CDS-C-linearis_contig89:372197..3723011622930694.13919-CDS-C-linearis_contig89:372197..372301Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372198..372301 -
1690881200.7764592-CDS-C-linearis_contig89:372197..3723011690881200.7764592-CDS-C-linearis_contig89:372197..372301Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372198..372301 -
1622930694.152029-CDS-C-linearis_contig89:372632..3727041622930694.152029-CDS-C-linearis_contig89:372632..372704Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372633..372704 -
1690881200.7877107-CDS-C-linearis_contig89:372632..3727041690881200.7877107-CDS-C-linearis_contig89:372632..372704Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372633..372704 -
1622930694.1646523-CDS-C-linearis_contig89:372991..3733991622930694.1646523-CDS-C-linearis_contig89:372991..373399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372992..373399 -
1690881200.800364-CDS-C-linearis_contig89:372991..3733991690881200.800364-CDS-C-linearis_contig89:372991..373399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 372992..373399 -
1622930694.190206-CDS-C-linearis_contig89:373618..3737001622930694.190206-CDS-C-linearis_contig89:373618..373700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 373619..373700 -
1690881200.811856-CDS-C-linearis_contig89:373618..3737001690881200.811856-CDS-C-linearis_contig89:373618..373700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 373619..373700 -
1622930694.202641-CDS-C-linearis_contig89:373997..3741311622930694.202641-CDS-C-linearis_contig89:373997..374131Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 373998..374131 -
1690881200.8221354-CDS-C-linearis_contig89:373997..3741311690881200.8221354-CDS-C-linearis_contig89:373997..374131Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 373998..374131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16416.1prot_C-linearis_contig89.16416.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 371461..374131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16416.1

>prot_C-linearis_contig89.16416.1 ID=prot_C-linearis_contig89.16416.1|Name=mRNA_C-linearis_contig89.16416.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=339bp
WGGDELQHPDGWITNWAGDSPRETSDAAEADTEEIISAKDKKARRDFYAD
FTERALAKTCGEYGEAKIDVEEDDLCVKQEQVLAWRRWVDLRHRVPGASA
RLFCCPWAGGNSLAFERWPEQLPGVEVVPLLLPGRLTRAGESSIRNLPEL
VQLAVEALCGLNLLAHDDIPYFMLGQEFGALVAFEMCRRVQAEFPVEGLF
VSSMSCPQMIHEREKVTLLHQGGEVFRGKNAEVESAMLRRGPPMPQELLE
NKDLLEIFTPVWFADLSALDTYEYESGTPLECPIYSFGGKKDGEQKMENW
AMESSSTESDSILFEGGPFFFLDWDNEAELLRLVRDRCT
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mRNA from alignment at C-linearis_contig89:371461..374131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16416.1 ID=mRNA_C-linearis_contig89.16416.1|Name=mRNA_C-linearis_contig89.16416.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2671bp|location=Sequence derived from alignment at C-linearis_contig89:371461..374131- (Chordaria linearis ClinC8C monoicous)
TGGGGCGGAGATGAGCTGCAGCACCCCGACGGCTGGATCACGAACTGGGC AGGAGATTCTCCCAGGGAAACAAGCGATGCTGCTGAGGCCGACACCGAGG AGATCATAAGCGCGAAGGACAAGAAGGCACGAAGGTATGTAAACTCAGTA AACAACGCACACATACCTGATGCGTCGTGCGGTGTAGCCAGCTTGTGCGG TGTGTAGCCAGCTTATACTTGCGTTGCCAGTAGACAAGGGTGTTCAGCCG TGGCCTTCTTGTGGGGGGGCAAGACACGCCAGAGTAGCTGAAGAATCCAA CGCGCGGAAGACCTTTCGAAGCGACGACGCAACACACCACTCCTACATAG TCTACACCGGATGCAACAAAACATGACATGGTAGCTGGTGCTACAGGTCT ACCCTGTATAATCACATTCGACACCCAACAGAGACTTCTACGCGGACTTC ACGGAACGAGCACTAGCTAAAACCTGCGGCGAGTACGGTGAAGCGAAGAT CGACGTCGAAGAGGTAGATCAACCAGGCTCTGCTTGCGACTTTAGTTTCC GTGTTTAAGAATCTCATCATACTCTCGACAACTTGGATAAGGAGAAGGGA AACATGTGCCACTTTTGCTGTCTTCATGAAAGTATTGTTTATTTCTCATG CTTTGTTCTCTCACAGCACACATCAGTCGCATTCATATATCGTGGTTTTC GTGGGGAACTTCGATTTTGCACCCTCTTTCAGGATGATCTCTGCGTCAAG CAAGAGCAAGTGCTTGCGTGGCGTCGGTGGGTTGATCTCAGACATCGTGT GCCCGGTGCATCAGCACGGTTGTTCTGCTGCCCTTGGGCCGGGGGCAACA GTCTCGCCTTCGAAAGATGGCCCGAGCAACTGCCTGGGGTGGAGGTTGTG CCCCTTCTACTTCCAGGAAGACTCACCCGTGCGGGAGAGAGTTCCATCAG GAACCTCCCCGAACTCGTGCAGTTGGCGGTTGAGGCGCTCTGTGGACTCA ATCTTCTCGCGCACGACGACATCCCCTACTTCATGCTGGGGCAAGAATTT GGAGCATTGGTGGCGTTTGAGATGTGCCGGAGAGTGCAGGCGGAGTTCCC TGTGGAGGGGTTGTTTGTGTCTAGCATGAGCTGCCCTCAGGTGTGTGTGT GTGTGTGTGTGTGTGTGTTTATTAACCGTGGGTACCGTTCCCGCCTGTTG ACAATTGATAGAGGATTTGCCAAGCCGTCCCCAAGCTGTTGTTGTCTACG CGTGGGTTTATGTTTGTATCGATAGCGAAAGGGAAATGATCCGCAGTTAC CTGTTGTAGAGTTCCAAAAGGCTACCGTAGCATGCATACATATTTCCTTT TTTTGACGTGCCACTGTTTGTGTACGGGTGACCAATGGGCTTGATCTCGA CGTCCTCACATCAATTTGTAAGTGCAGATGATACACGAGAGAGAGAAAGT GACGTTGCTGCACCAAGGTGGCGAAGTATTTCGCGGCAAAAATGCAGAGG TAAGTCCCTCCTTTTCTCTCGTGGCCTTTCAGTGCGGCATCTTTGCTGGT TGATTCCTCAGGGAGAATGGCTGTTTGTAATTACAAAATGCTTCATCTAC TGCTGTGCCCTGTGGAAAGTTGACAGGTACGAAACGTGTTCTCAATCAGG AATAACGTGGATATCACAAGCCCATTCTGTATCCGTTTTATTCTGTCCGA CTTTCGAATCCACGAATAATCATTTTTATTTAAGTGCTCTCACTTGATCA TAACGGCAGCTTAGACTCACAATACAAACTCGCCATATTCAACGGACGAA TAACGGTTGACACGACGTTGGGCGGGTCAGGTTGAGAGCGCGATGCTTCG GAGAGGGCCGCCCATGCCGCAGGAGCTGCTCGAGAACAAAGACTTATTGG AAATCTTTACACCTGTATGGTTTGCAGACCTCAGGTGGGTGACGCACACT CGTGGACATCATGACGGATGGCCATATTTTTGTCTCCAAGTAGATGTGTT CGCCTCGCATTGCAATATGACGCTCGTGTCCCAAGGCCCTTCTTTGCACT CTCGAAATATTGTGTTGAAATTTGTGTTAATTGTCGGTATCCCCACACCC GGTAGCCAAGGCTGCGGCACGTTTTCGATTGGGCATCCGCACAGCGCCCT GGACACGTACGAGTACGAAAGTGGAACTCCTCTCGAGTGCCCTATCTACA GCTTTGGCGGCAAGAAAGATGGCGAGCAGAAGATGGAGAATTGGGCCATG GAATCATCGTCCACAGAGAGCGATAGCATTCTGTTTGAGGGAGGGCCGTT TTTTTTCCTTGATTGGGACAACGAGGTACATTAGGTGTACTACTGTAGGA CAGGTGTCTTTAGTTTCGGTATGTTTATGGCACATCATTGTCCCTGGTTT ATGAGCGCCGGTGTAAGGATCAATTTGGAGGTGCCCTTTGGGTTAGGTGT CAAGCAGCAGGCTCTCAAAAAACCAAATCGGTTACCCTGATCAAGAGTCG GGTGCTGTGCTGAATTGCTGCGGACGAACGCGGTGTAGCAGGCAACAAGT TCATGGCCTGTCATCTCGCCCAACAAGCGCATTGATACAGGACTTGTACT TATCGGGCTGTGTGTTTCGCTCGCTACGTTGACAGGCTGAACTGCTTCGC CTGGTTAGAGATCGCTGCACA
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Coding sequence (CDS) from alignment at C-linearis_contig89:371461..374131-

>mRNA_C-linearis_contig89.16416.1 ID=mRNA_C-linearis_contig89.16416.1|Name=mRNA_C-linearis_contig89.16416.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at C-linearis_contig89:371461..374131- (Chordaria linearis ClinC8C monoicous)
TGGGGCGGAGATGAGCTGCAGCACCCCGACGGCTGGATCACGAACTGGGC
AGGAGATTCTCCCAGGGAAACAAGCGATGCTGCTGAGGCCGACACCGAGG
AGATCATAAGCGCGAAGGACAAGAAGGCACGAAGTGGGGCGGAGATGAGC
TGCAGCACCCCGACGGCTGGATCACGAACTGGGCAGGAGATTCTCCCAGG
GAAACAAGCGATGCTGCTGAGGCCGACACCGAGGAGATCATAAGCGCGAA
GGACAAGAAGGCACGAAGAGACTTCTACGCGGACTTCACGGAACGAGCAC
TAGCTAAAACCTGCGGCGAGTACGGTGAAGCGAAGATCGACGTCGAAGAG
AGACTTCTACGCGGACTTCACGGAACGAGCACTAGCTAAAACCTGCGGCG
AGTACGGTGAAGCGAAGATCGACGTCGAAGAGGATGATCTCTGCGTCAAG
CAAGAGCAAGTGCTTGCGTGGCGTCGGTGGGTTGATCTCAGACATCGTGT
GCCCGGTGCATCAGCACGGTTGTTCTGCTGCCCTTGGGCCGGGGGCAACA
GTCTCGCCTTCGAAAGATGGCCCGAGCAACTGCCTGGGGTGGAGGTTGTG
CCCCTTCTACTTCCAGGAAGACTCACCCGTGCGGGAGAGAGTTCCATCAG
GAACCTCCCCGAACTCGTGCAGTTGGCGGTTGAGGCGCTCTGTGGACTCA
ATCTTCTCGCGCACGACGACATCCCCTACTTCATGCTGGGGCAAGAATTT
GGAGCATTGGTGGCGTTTGAGATGTGCCGGAGAGTGCAGGCGGAGTTCCC
TGTGGAGGGGTTGTTTGTGTCTAGCATGAGCTGCCCTCAGGATGATCTCT
GCGTCAAGCAAGAGCAAGTGCTTGCGTGGCGTCGGTGGGTTGATCTCAGA
CATCGTGTGCCCGGTGCATCAGCACGGTTGTTCTGCTGCCCTTGGGCCGG
GGGCAACAGTCTCGCCTTCGAAAGATGGCCCGAGCAACTGCCTGGGGTGG
AGGTTGTGCCCCTTCTACTTCCAGGAAGACTCACCCGTGCGGGAGAGAGT
TCCATCAGGAACCTCCCCGAACTCGTGCAGTTGGCGGTTGAGGCGCTCTG
TGGACTCAATCTTCTCGCGCACGACGACATCCCCTACTTCATGCTGGGGC
AAGAATTTGGAGCATTGGTGGCGTTTGAGATGTGCCGGAGAGTGCAGGCG
GAGTTCCCTGTGGAGGGGTTGTTTGTGTCTAGCATGAGCTGCCCTCAGAT
GATACACGAGAGAGAGAAAGTGACGTTGCTGCACCAAGGTGGCGAAGTAT
TTCGCGGCAAAAATGCAGAGATGATACACGAGAGAGAGAAAGTGACGTTG
CTGCACCAAGGTGGCGAAGTATTTCGCGGCAAAAATGCAGAGGTTGAGAG
CGCGATGCTTCGGAGAGGGCCGCCCATGCCGCAGGAGCTGCTCGAGAACA
AAGACTTATTGGAAATCTTTACACCTGTATGGTTTGCAGACCTCAGGTTG
AGAGCGCGATGCTTCGGAGAGGGCCGCCCATGCCGCAGGAGCTGCTCGAG
AACAAAGACTTATTGGAAATCTTTACACCTGTATGGTTTGCAGACCTCAG
CGCCCTGGACACGTACGAGTACGAAAGTGGAACTCCTCTCGAGTGCCCTA
TCTACAGCTTTGGCGGCAAGAAAGATGGCGAGCAGAAGATGGAGAATTGG
GCCATGGAATCATCGTCCACAGAGAGCGATAGCATTCTGTTTGAGGGAGG
GCCGTTTTTTTTCCTTGATTGGGACAACGAGCGCCCTGGACACGTACGAG
TACGAAAGTGGAACTCCTCTCGAGTGCCCTATCTACAGCTTTGGCGGCAA
GAAAGATGGCGAGCAGAAGATGGAGAATTGGGCCATGGAATCATCGTCCA
CAGAGAGCGATAGCATTCTGTTTGAGGGAGGGCCGTTTTTTTTCCTTGAT
TGGGACAACGAGGCTGAACTGCTTCGCCTGGTTAGAGATCGCTGCACAGC
TGAACTGCTTCGCCTGGTTAGAGATCGCTGCACA
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