mRNA_C-linearis_contig89.16402.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16402.1
Unique NamemRNA_C-linearis_contig89.16402.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A835ZGE5_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE5_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.460e-71
Identity = 134/265 (50.57%), Postives = 172/265 (64.91%), Query Frame = 1
Query:  172 TATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASA----GSKKSAGKRKAKEAAEAEELMAMIKGRHEERNAASLS----THRARDFTSLVSSLEERYG----GKKGGKKESKRAKQPPPDLDDAEFERIQKQLEKGKSS 930
            +AT + IKKAYFKLALKCHPDKCPGDE A  RFQAL +VHSVLSDPERRALYDETG+VA+   E  +     W EY+R LFPK+T +DI+ F  +Y+GS+EEK D+++AY   KG M  ++D++ML    D  RF TVI+ AI + +V S+ AF+ + S     G K     +  KEA EAEEL A++KG  + RNA        T  A+ F S+++SLE RY     GKK        A + PPD+DDAEFERIQ +L +G  S
Sbjct:    6 SATESQIKKAYFKLALKCHPDKCPGDESAHTRFQALGMVHSVLSDPERRALYDETGEVADGEGEFNQANFDMWYEYYRNLFPKVTTSDIDKFKGEYQGSEEEKGDIIKAYVACKGDMAKVIDTVMLSGNDDAARFGTVIEEAIAAGDVKSYAAFKTSLSKLTRPGKKAKTSAKAEKEAKEAEELAALLKGNADRRNAGGGGGGQLTRGAQHFDSMIASLEGRYASGGAGKKAXXXXXXAAPEGPPDMDDAEFERIQARLMQGAKS 270          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A7S2Y545_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y545_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.770e-62
Identity = 125/286 (43.71%), Postives = 176/286 (61.54%), Query Frame = 1
Query:  109 DSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQE--GQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEA----------EELMAMIKGRHEERNAASLSTHRARDFTSLVSSLEERYGGK------KGGKKESKRAKQPPPDLDDAEFERIQKQL 912
            D I + FG   SLY+IL VP TA+ + IKKAYFK ALKCHPDKCPGDE AK RFQALS VH+VLS+P+ R++YDETG++ ++ +   G   + G WS+YWR LFP++T A I SF  KY+GSDEE+ DV+ AY    G +  ++D++ML +  DE+RF+ +ID AI+S E++             KK+   +KA+               E L  +++ RH+E    S+ +HR + FTS++ SLEE+Y  K      K GK   K  +   P+ D  EF+ IQ++L
Sbjct:    3 DQIQSMFGHELSLYDILGVPPTASASQIKKAYFKAALKCHPDKCPGDEAAKNRFQALSSVHAVLSNPDLRSIYDETGEIGDDSENMGGMNGDDG-WSDYWRMLFPRVTTAGISSFQQKYQGSDEERADVIAAYNDFNGDIMAVIDNVMLASSDDEDRFQAIIDYAIDSGEIAKKR----------KKTPKSQKARXXXXXXXXXXXXXXXEMLAEIMRKRHQEN--LSIVSHRRQQFTSMIDSLEEKYSSKEKKTKKKSGKNRQKHQEFEEPNED--EFKSIQERL 273          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A1V9ZBC7_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBC7_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.900e-58
Identity = 116/251 (46.22%), Postives = 156/251 (62.15%), Query Frame = 1
Query:  103 SMDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEAEELMAMIKGRHEERNAASLSTHRARDFTSLVSSLEERYGGKKGGKKESKRA 855
            +MD++AA FG  + LY +L V  TAT + +K AY K ALK HPDK P D +A  +FQ L  +HS LS+PE RA+YDETG++  E  E        W +YWR LFPK+T  DI+SF   Y+GSDEE +DVL AY+K+KGKM +I+D IML  + D +RF  +I  AI+++EV  +PAF K   A   K+  K+   EA  AEEL+A I+G     NA      R + F S++S LE +Y  +   KK  K+A
Sbjct:    7 TMDAVAAHFGT-RDLYAVLGVKDTATESELKTAYRKKALKFHPDKNPDDAEATTKFQLLCTIHSALSNPELRAVYDETGELETEATE--TASFRDWLDYWRMLFPKVTEKDIQSFETSYRGSDEEAQDVLNAYQKYKGKMQSILDVIMLSTDNDIDRFAEIIQEAIDADEVPLYPAFNKRPKAS--KARSKKAEAEAKAAEELIAKIRG-----NAGGALAKRQQGFASILSGLESKYADEPKSKKTKKKA 247          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A1W0A4M0_9STRA (J domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M0_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.160e-57
Identity = 120/273 (43.96%), Postives = 168/273 (61.54%), Query Frame = 1
Query:   94 VTVSMDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEAEELMAMIKGRHEERNAASLSTHRARDFTSLVSSLEERYGGKKGGKKESKRAKQPPPDLDDAEFERIQKQL 912
            +T +M+ I   FGE + LY IL V  T T + +K AY K ALK HPDK P D +A  +FQ L  +HS LS+P+ RA+YDETG++  E  E    +   W EYWR LFPK+TV DIE+F   Y+ S+EE +DVL+AY+K+KGKM +I+D IML  E D ERF  +I  AI++ EV  +PAF+K   A   K   K+   EA  AEELMA I+G+ +          R + F SL+S+LE +Y  +   KK+ K++    P+  + EF+  Q+++
Sbjct:    1 MTTTMEKIEQHFGE-RDLYAILGVKKTCTASELKTAYRKTALKFHPDKNPDDPEATTKFQLLCTIHSSLSNPDLRAVYDETGELEVEATETASFK--DWLEYWRALFPKVTVKDIENFETSYRDSEEEAQDVLKAYEKYKGKMQSILDVIMLSTENDIERFSDIIQRAIDAEEVPMYPAFKKKPKA---KRNNKKAEAEAKAAEELMAKIRGKAD----GGALAKRQQGFASLLSNLEAKYADEPKSKKQKKKSN---PEPSEEEFQAAQRRV 260          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: K3WTQ8_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTQ8_GLOUD)

HSP 1 Score: 196 bits (498), Expect = 2.210e-57
Identity = 123/274 (44.89%), Postives = 173/274 (63.14%), Query Frame = 1
Query:   97 TVSMDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKG----RFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQ-WSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFR-----------KAASAGSKKSAGKRKAKEAAEAEELMAMIKGRHEER----NAASLSTHRARDFTSLVSSLEERYGGKKGGKKESKRAK 858
            + S + I A+FG+G  LYE+L V  +AT   I +AY KLALK HPDK  GDE +K     +FQALS +H++L+D E RA YDETG + +   E  ++   Q W +Y+  +FPK++ ADI  F ++Y+ SDEE+RDVL+AY K KG M +I+D+IML  E DEERF  +I+ AI++ EV S P +R           K  SA  +K    +K KEA EAEELM  ++G  +ER    + ++LS+ R R F SL++SLE RY  K G  K +K+++
Sbjct:    3 SASGELIYAQFGDGCDLYEVLGVDKSATEKEITRAYRKLALKYHPDKHRGDETSKAESTAKFQALSAIHALLNDAEARAYYDETGSIMDS--ETDKSPSFQMWVDYFARIFPKVSEADITKFSDEYRFSDEEQRDVLDAYSKLKGHMQSILDTIMLSTEDDEERFAEMIEKAIKNKEVKSLPKWREYVRAKASKPKKQESAAQQKRKQAKKDKEAREAEELMRKVRGNQQERANGGSVSTLSSKRERGFESLLASLETRYAEKPGKGKSAKKSR 274          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: G4YKX5_PHYSP (J domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YKX5_PHYSP)

HSP 1 Score: 191 bits (484), Expect = 2.320e-55
Identity = 121/285 (42.46%), Postives = 169/285 (59.30%), Query Frame = 1
Query:  115 IAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGR----FQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKA-----------KEAAEAEELMAMIKGRHEERNAAS----LSTHRARDFTSLVSSLEERYGGKKGGKKESKRAKQPPPDLDDAEFERIQKQL 912
            I AEFG+   LY +L V  +AT   I +AY KLALK HPDK  GDE A+ +    FQA+S +HS+LSD E RA+YDE+G +  +  + +      W++Y+  +FPK+T  DI  F  +Y+ SDEE+RDVL+AY K++GKM  ++D+IML  + DEERF  +I  A++  EV +FP + + +   SKK   K              KEA EAEEL   I+G  ++R   S    LST R R F SL+ +LE +Y  +KG K + K A Q P +  + EF   QK+L
Sbjct:    6 IHAEFGDDCDLYAVLGVERSATDKEITRAYRKLALKYHPDKQRGDEAARAKATAKFQAVSAIHSILSDKEARAVYDESGTILSDDHDDKSPSFQMWTQYFARVFPKVTTEDIARFEGEYRHSDEERRDVLDAYTKYEGKMKHVMDTIMLSTDDDEERFAEMIQKAVKEKEVKAFPTWCEYSKEQSKKKKRKETPAEQXXXXXXXXKEAREAEELFNKIRGNQQKRGEGSGSTALSTERKRGFESLLGNLEAKYA-EKGKKSKRKAAPQDPGEPSEEEFLAAQKRL 289          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A4D9D5G5_9STRA (J domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5G5_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.990e-55
Identity = 121/295 (41.02%), Postives = 163/295 (55.25%), Query Frame = 1
Query:   94 VTVSMDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEAEELMAMIKGRHEERNAASLSTHRARDFTSLVSSLEERYG-GKK---------GGK--------KESKRAKQPPPDLDDAEFERIQKQLEKGK 924
            +T     +A  FGE K+LYEIL V   A  A I+KAYFK+AL CHPDKCP D +A  RFQALS+VH+ LSD  +R  YDETG++  E  E  ++E  +W EYWR LFP +TV  I  F  +Y+ S+EE RDVL AY++ +GKM  ++D++ML  + DE RFR +I+ AI +  V  F  F+  A                         I+ R      A++   R +  +S + SLEE+YG GKK         GGK        +E  R  Q   D+DDA+FER++  L K K
Sbjct:    7 MTTPQAQVAKAFGEKKTLYEILGVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDTNKRRNYDETGEIGSEDAELNQSEQ-EWYEYWRALFPTVTVEKINRFQEEYRESEEEARDVLRAYEEAQGKMSLVIDNVMLATDGDEGRFRKMIEEAITNKRVKRFKCFK--ADVRKDLXXXXXXXXXXXXXXXXXXXIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKVGGSGCKEAGGKGRKRDREAREGARGSQRTEDIDDADFERLRDSLSKKK 298          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A067CTY9_SAPPC (J domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTY9_SAPPC)

HSP 1 Score: 189 bits (481), Expect = 3.160e-55
Identity = 108/231 (46.75%), Postives = 150/231 (64.94%), Query Frame = 1
Query:  103 SMDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDEDAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEAEELMAMIKGRHEERNAASLSTHRARDFTSLV 795
            +MD++ A FG+ + LY IL V ++ATPA +K AY K ALK HPDK P D+DA  +FQ L  +H+ LS+PE RA+Y+ETG++  E  E   +    W +YWR LFPK+T  DI+SF   Y+ SDEE +DVL+AY+K+KGKM +I+D +ML  + D +RF  +I  AI++NEV  +PAF K      K    K+ A EA  AEEL+A I+G     N A+  + R + F SL+
Sbjct:    5 TMDAVEASFGQ-RDLYAILGVKASATPAQLKTAYRKKALKYHPDKNPDDDDATTKFQLLCTIHAALSNPELRAVYEETGELETEATE--TSSFRDWVDYWRNLFPKVTTKDIQSFEKTYRESDEEAQDVLQAYEKYKGKMQSILDVVMLSTDDDIDRFTKIIQDAIDANEVPLYPAFTKKIKTKGK---SKKAAAEAKAAEELLAQIRG-----NQAAALSKRQQGFASLL 224          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A3M6VAS7_9STRA (J domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAS7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 9.710e-55
Identity = 122/293 (41.64%), Postives = 178/293 (60.75%), Query Frame = 1
Query:  115 IAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDE----DAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGK-----RKAKE------AAEAEELMAMIKG----RHEERNAASLSTHRARDFTSLVSSLEERYGGKKGGKKESKRAKQPPPDLDDAEFERIQKQLEKGKSSSQ 936
            I AEFG+   LY ++ V  +AT   I +AY KLALK HPDK  GD+     A  +FQA+S +HS+LSD E RA+YDE+G +  +  + + +    W++Y+  +FPK+++ DI+ F  +Y+ SDEE+RDVL AY K++GKM  I+D+IML  + DEERF  +I  AI+  E+ +FP +R+     SKK+  K     +K K+      A EAEEL+  I+G    R EE ++ +LST R R+F SL+ SLE +Y  K G K + K A Q   +    EF   QK+L + K  ++
Sbjct:    6 IRAEFGDDCDLYAVMGVSRSATDKEITRAYRKLALKYHPDKQRGDKASCIKATAKFQAVSAIHSILSDKEARAVYDESGTILSDDHDNKTSSFQMWTQYFARIFPKVSMEDIDRFEGEYRHSDEERRDVLSAYTKYEGKMQQILDTIMLSTDDDEERFAEMIRKAIKEKELKTFPTWREYVKKQSKKTKRKETPVEQKRKQXXXXXXAREAEELLKKIQGNQKKRGEESDSTALSTERKREFKSLLGSLEAKYTDK-GKKSKRKAASQDLGEPSKEEFLAAQKRLNRSKKCAE 297          
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Match: A0A6A3UWZ9_9STRA (J domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UWZ9_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.830e-54
Identity = 119/289 (41.18%), Postives = 170/289 (58.82%), Query Frame = 1
Query:  115 IAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDE----DAKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWRTLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGAEADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGK-----------RKAKEAAEAEELMAMIKGRHEERNAAS----LSTHRARDFTSLVSSLEERYGGKKGGKKESKRAKQPPPDLDDAEFERIQKQLEKGK 924
            I AEFG+   LY +L V  +AT   + +AY KLALK HPDK  GDE     A  +FQA+S +HS+LSD E RA+YDE+G +  +  + +      W++Y+  +FPK+T  DI  F  +++ SDEE+RDVL+AY K++G+M  ++D+IML  + DEERF  +I  AI+  EV +FP +R+     +KK   K           ++ KEA EAEEL   I+G  + R   S    LST R R F SLV SLE +Y  +K  K + K   Q P +  + EF   QK+L++ +
Sbjct:    6 IHAEFGDDCDLYTVLGVERSATDKELTRAYRKLALKYHPDKQRGDEASRAKATAKFQAVSAIHSILSDKEARAVYDESGTILSDEHDAKPPSFQMWTQYFARMFPKVTTEDIARFEGEFRHSDEERRDVLDAYTKYEGEMQHVMDTIMLSTDDDEERFAEMIQEAIKEKEVKAFPTWREYVKEQAKKKRKKETPAQQKRKQAKREKEAREAEELFNKIRGNQQNRGEGSGSTALSTERKRGFESLVGSLEAKYA-EKDKKSKRKATPQDPGEPSEEEFLAAQKRLKRSR 293          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGE5_9STRA3.460e-7150.57J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A7S2Y545_9STRA2.770e-6243.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9ZBC7_9STRA4.900e-5846.22J domain-containing protein n=1 Tax=Achlya hypogyn... [more]
A0A1W0A4M0_9STRA1.160e-5743.96J domain-containing protein n=1 Tax=Thraustotheca ... [more]
K3WTQ8_GLOUD2.210e-5744.89J domain-containing protein n=1 Tax=Globisporangiu... [more]
G4YKX5_PHYSP2.320e-5542.46J domain-containing protein n=12 Tax=Phytophthora ... [more]
A0A4D9D5G5_9STRA2.990e-5541.02J domain-containing protein n=1 Tax=Nannochloropsi... [more]
A0A067CTY9_SAPPC3.160e-5546.75J domain-containing protein n=1 Tax=Saprolegnia pa... [more]
A0A3M6VAS7_9STRA9.710e-5541.64J domain-containing protein n=1 Tax=Peronospora ef... [more]
A0A6A3UWZ9_9STRA1.830e-5441.18J domain-containing protein n=4 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:256843..259774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue3.5e-48
Seed eggNOG ortholog65071.PYU1_T008354
KEGG koko:K09529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MDYE@121069,COG2214@1,KOG0719@2759
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-24_000680.2
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons6
Model size948
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16402.1prot_C-linearis_contig89.16402.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 256948..259768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.9282284-UTR-C-linearis_contig89:256842..2569471622930690.9282284-UTR-C-linearis_contig89:256842..256947Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 256843..256947 +
1690881198.909224-UTR-C-linearis_contig89:256842..2569471690881198.909224-UTR-C-linearis_contig89:256842..256947Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 256843..256947 +
1622930691.0543096-UTR-C-linearis_contig89:259768..2597741622930691.0543096-UTR-C-linearis_contig89:259768..259774Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 259769..259774 +
1690881198.9989877-UTR-C-linearis_contig89:259768..2597741690881198.9989877-UTR-C-linearis_contig89:259768..259774Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 259769..259774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.9486527-CDS-C-linearis_contig89:256947..2570671622930690.9486527-CDS-C-linearis_contig89:256947..257067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256948..257067 +
1690881198.9238625-CDS-C-linearis_contig89:256947..2570671690881198.9238625-CDS-C-linearis_contig89:256947..257067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256948..257067 +
1622930690.9679513-CDS-C-linearis_contig89:257514..2576781622930690.9679513-CDS-C-linearis_contig89:257514..257678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 257515..257678 +
1690881198.9374468-CDS-C-linearis_contig89:257514..2576781690881198.9374468-CDS-C-linearis_contig89:257514..257678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 257515..257678 +
1622930690.9806743-CDS-C-linearis_contig89:257870..2579431622930690.9806743-CDS-C-linearis_contig89:257870..257943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 257871..257943 +
1690881198.9512186-CDS-C-linearis_contig89:257870..2579431690881198.9512186-CDS-C-linearis_contig89:257870..257943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 257871..257943 +
1622930691.0029476-CDS-C-linearis_contig89:258777..2590021622930691.0029476-CDS-C-linearis_contig89:258777..259002Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 258778..259002 +
1690881198.9627473-CDS-C-linearis_contig89:258777..2590021690881198.9627473-CDS-C-linearis_contig89:258777..259002Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 258778..259002 +
1622930691.0162818-CDS-C-linearis_contig89:259244..2593491622930691.0162818-CDS-C-linearis_contig89:259244..259349Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 259245..259349 +
1690881198.9718711-CDS-C-linearis_contig89:259244..2593491690881198.9718711-CDS-C-linearis_contig89:259244..259349Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 259245..259349 +
1622930691.0399737-CDS-C-linearis_contig89:259618..2597681622930691.0399737-CDS-C-linearis_contig89:259618..259768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 259619..259768 +
1690881198.9809957-CDS-C-linearis_contig89:259618..2597681690881198.9809957-CDS-C-linearis_contig89:259618..259768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 259619..259768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16402.1

>prot_C-linearis_contig89.16402.1 ID=prot_C-linearis_contig89.16402.1|Name=mRNA_C-linearis_contig89.16402.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=279bp
MDSIAAEFGEGKSLYEILDVPSTATPASIKKAYFKLALKCHPDKCPGDED
AKGRFQALSLVHSVLSDPERRALYDETGDVAEEGQEGQRTEGGQWSEYWR
TLFPKITVADIESFGNKYKGSDEEKRDVLEAYKKHKGKMGTIVDSIMLGA
EADEERFRTVIDAAIESNEVSSFPAFRKAASAGSKKSAGKRKAKEAAEAE
ELMAMIKGRHEERNAASLSTHRARDFTSLVSSLEERYGGKKGGKKESKRA
KQPPPDLDDAEFERIQKQLEKGKSSSQG*
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mRNA from alignment at C-linearis_contig89:256843..259774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16402.1 ID=mRNA_C-linearis_contig89.16402.1|Name=mRNA_C-linearis_contig89.16402.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2932bp|location=Sequence derived from alignment at C-linearis_contig89:256843..259774+ (Chordaria linearis ClinC8C monoicous)
GCCGGGCAGAGAAAAGTTGAAAATCTGCTTCCTCTTTCCGCCGTCTCTTC CACCTTCCACCTTCCGCCTTCCGCCTTCCGCCAAACTCCATAGGTTACGG TTAGCATGGATTCCATCGCGGCAGAGTTTGGAGAAGGGAAATCTCTGTAT GAGATCCTCGACGTTCCCTCGACGGCGACGCCAGCATCGATCAAGAAAGC GTATTTCAAGTTGGCCCTCAAGTGTGTGAGTTGTTTTTCGCCGCGCCGCC CTTGTAGTTGCACCAAGAAGTGCACGGTTGGTGTCCCAGAAAGGTTTGGC AGGTAGATTGTAGTCTCCTCCAATCGATTATGCTTCAGGCGCGGAGTACG AGACGTGCCGAGTGCTGTGCGCGGGCTCGCAAAGAAGACGGATAACACGC GCTCAGTCTGGAACATGCGGTGCTCCTGGCAGCAGAACCCTCACGATTGC AAAGTTGGATGACGCTTGCTGAGGGCCTTGTACGCTCGCCTCAGAACGTA TATTTTCTTGCGATCAATCCACCGCATGCATGCCTCGAAGTCGAGCCTAT GTGGCTACTCTGTCTGTAGCTCTTCGTCCAACAGGCCGTTGCCGGTACAA GTACCGCCACCGGGTTAGGAGGCTCTCCCTGGATCGCTTAAGATGTTGAT TCTTGTGTGTTTAACCCTGCAGCATCCAGATAAGTGTCCTGGAGACGAGG ATGCGAAGGGTCGGTTCCAGGCGCTCTCTTTGGTCCATTCGGTATTGTCC GACCCTGAGCGACGAGCCCTGTACGACGAAACGGGAGATGTGGCAGAGGA GGGACAAGAGGGCCAAAGAACAGAGGGGGGGCAGTGGTGAGGGAATACCT AGCGCGAGCTGAGAGGCGTGCAGCATCTTGGACAGAGGGTTGTTAGACTA CGTTTGCGGGAGGACAGGATAAGCCTAAATTTAAGGTGGACGCTTTTTGA ACTTGGATGATACGAAGGCCAACGTCGTTTGATCGCCCGAAGTCCCCTCC TGAACTAGTCTGCGTTCGGTTTGCGCAGGTCCGAGTACTGGCGCACTCTG TTCCCCAAAATCACCGTCGCTGACATCGAATCTTTCGGCAACAAGTACAA GGTGAGTGTCGGCGTTTCGAAAAGGCATATGATAAAACGCAGTTCCCACA TTGGCAACTTCCCGCTTGCTTAACTGAGGGACATACACAAAGTAGCGCAA GGTAATCTGAAAAGGTGCAGGCCACAACATACGACATGAGCAGGAGCTGC GTGGTGTCGTGGCGACCTCCTGGGCTACATGTAAGAAGAACCCCCAATGC TTCTCTCCTTCAACTCATTTACCAGGGAGAGCGCAGTCTACTTCAATTCT ACCCTCCCGCTAAGCGCGAAGTGCTGGGCAGACTCGGCCAGGGGCTTGGT TTAGGCTTTCAATAATTGACCGTTTTTTTTTTAGGATTATTTTTAGACCA GCCGCGCATGTCCGACTTTCGCGTCCAGTCAGGGGCTAACCACAGCAGTT GCGCAGCATGAGGCTATCGCTATATGCGTCTAGAGTAATCGCGCCGAACG AAGTCAACTGTTGTGCGTGTGAGGTAGCCAGAGGAGGGCATGGTGGTTCG AAAGCGGGAGATGCGGATGAGAACAAAAACAAGTGTGGTGCATGGCAGAG CGGAGAGACCCATATGCCCCGGATACCTGTGTATGCAGCCTTGAGCTCGA AGCTTCACTAGCGCCCACTAAGTGCTGACTTGTCACGAGGGGGTCTCGGG TTAGATTGCTCTCGAGAAAGATATTGAAGTATAGCCGATTGCAAGTCGTA ACCACGGTGTGACTAATGTTTCGTCCCTCCTATTTTTCGACTCCGAACGG GTTAGAATGGGAACGATGCGCGTACCACATACTCCAGAGTATGCCCCACA CGGCACATATGTACACGTCCCTGCTTTCTTGTCAGGGCTCCGATGAGGAG AAGCGAGATGTACTCGAAGCGTATAAGAAGCATAAGGGGAAGATGGGCAC AATTGTGGACTCGATAATGCTCGGTGCGGAGGCGGACGAGGAGCGGTTTC GGACTGTGATCGACGCCGCCATTGAGTCCAACGAGGTTTCTTCATTCCCA GCATTCAGGAAAGCAGCCAGCGCGGGGTCCAAGAAGTCCGCAGGAAAGCG GAAAGCGAAGGTTGACAGGGTAACAGCAGACCAGCTTTTTCATCACTGCA GAATGACATCCGTGTTGACCGTTCCGATGCGTCTCAGTGCTCGCGCAACT GCGCCATAAAGACACCGGTCACTCTACCCGTGGAGCCGTGTCCCAAGTAA GTCCAAAGGCTCTGGGCAGAAATGGCACCACTATTTGCCGACTGCAGGGC CCAAAAGTTCAACCTTTCAGTTTGATTGCGTCTCGCAACTTAAATCAACC AGGAGGCTGCCGAGGCGGAGGAACTGATGGCAATGATCAAGGGACGTCAC GAGGAGAGGAACGCGGCGTCGCTGTCTACTCACCGGGCCAGGGATTTTAC GTCTCTGGTGAGCAACCCGGTTTGTGTGCTATTGCGGAGAATGTCGTGTA AAACCCACGATGGCCAACTCTTTTAATCTGGTGGCGTTGAAGACAGCAGG CTACCCGCATTCCACTCGCGGACAATAGATACTGGTGTTGCTCATCGATG ATCAACTATTAGTTTTCCGGTGTGGGAATCTCACGTTTCTCGCCGTTGGT GAACATGTTTCAAACGTGGTCAGTGTTTCTGACAGAGTTGGTGACGTGCC GTGTGTTATTTTATTTTTTTAACCAGGTTTCTTCGCTTGAAGAACGCTAC GGAGGGAAGAAGGGCGGAAAAAAGGAAAGTAAACGCGCCAAACAGCCCCC CCCCGACCTTGACGACGCCGAGTTTGAGCGCATTCAAAAGCAACTCGAGA AGGGGAAGAGCAGCTCTCAGGGATGAAACGAG
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Coding sequence (CDS) from alignment at C-linearis_contig89:256843..259774+

>mRNA_C-linearis_contig89.16402.1 ID=mRNA_C-linearis_contig89.16402.1|Name=mRNA_C-linearis_contig89.16402.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at C-linearis_contig89:256843..259774+ (Chordaria linearis ClinC8C monoicous)
ATGGATTCCATCGCGGCAGAGTTTGGAGAAGGGAAATCTCTGTATGAGAT
CCTCGACGTTCCCTCGACGGCGACGCCAGCATCGATCAAGAAAGCGTATT
TCAAGTTGGCCCTCAAGTGTATGGATTCCATCGCGGCAGAGTTTGGAGAA
GGGAAATCTCTGTATGAGATCCTCGACGTTCCCTCGACGGCGACGCCAGC
ATCGATCAAGAAAGCGTATTTCAAGTTGGCCCTCAAGTGTCATCCAGATA
AGTGTCCTGGAGACGAGGATGCGAAGGGTCGGTTCCAGGCGCTCTCTTTG
GTCCATTCGGTATTGTCCGACCCTGAGCGACGAGCCCTGTACGACGAAAC
GGGAGATGTGGCAGAGGAGGGACAAGAGGGCCAAAGAACAGAGGGGGGGC
AGTGCATCCAGATAAGTGTCCTGGAGACGAGGATGCGAAGGGTCGGTTCC
AGGCGCTCTCTTTGGTCCATTCGGTATTGTCCGACCCTGAGCGACGAGCC
CTGTACGACGAAACGGGAGATGTGGCAGAGGAGGGACAAGAGGGCCAAAG
AACAGAGGGGGGGCAGTGGTCCGAGTACTGGCGCACTCTGTTCCCCAAAA
TCACCGTCGCTGACATCGAATCTTTCGGCAACAAGTACAAGGTCCGAGTA
CTGGCGCACTCTGTTCCCCAAAATCACCGTCGCTGACATCGAATCTTTCG
GCAACAAGTACAAGGGCTCCGATGAGGAGAAGCGAGATGTACTCGAAGCG
TATAAGAAGCATAAGGGGAAGATGGGCACAATTGTGGACTCGATAATGCT
CGGTGCGGAGGCGGACGAGGAGCGGTTTCGGACTGTGATCGACGCCGCCA
TTGAGTCCAACGAGGTTTCTTCATTCCCAGCATTCAGGAAAGCAGCCAGC
GCGGGGTCCAAGAAGTCCGCAGGAAAGCGGAAAGCGAAGGGCTCCGATGA
GGAGAAGCGAGATGTACTCGAAGCGTATAAGAAGCATAAGGGGAAGATGG
GCACAATTGTGGACTCGATAATGCTCGGTGCGGAGGCGGACGAGGAGCGG
TTTCGGACTGTGATCGACGCCGCCATTGAGTCCAACGAGGTTTCTTCATT
CCCAGCATTCAGGAAAGCAGCCAGCGCGGGGTCCAAGAAGTCCGCAGGAA
AGCGGAAAGCGAAGGAGGCTGCCGAGGCGGAGGAACTGATGGCAATGATC
AAGGGACGTCACGAGGAGAGGAACGCGGCGTCGCTGTCTACTCACCGGGC
CAGGGATTTTACGTCTCTGGAGGCTGCCGAGGCGGAGGAACTGATGGCAA
TGATCAAGGGACGTCACGAGGAGAGGAACGCGGCGTCGCTGTCTACTCAC
CGGGCCAGGGATTTTACGTCTCTGGTTTCTTCGCTTGAAGAACGCTACGG
AGGGAAGAAGGGCGGAAAAAAGGAAAGTAAACGCGCCAAACAGCCCCCCC
CCGACCTTGACGACGCCGAGTTTGAGCGCATTCAAAAGCAACTCGAGAAG
GGGAAGAGCAGCTCTCAGGGATGAGTTTCTTCGCTTGAAGAACGCTACGG
AGGGAAGAAGGGCGGAAAAAAGGAAAGTAAACGCGCCAAACAGCCCCCCC
CCGACCTTGACGACGCCGAGTTTGAGCGCATTCAAAAGCAACTCGAGAAG
GGGAAGAGCAGCTCTCAGGGATGA
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