mRNA_C-linearis_contig89.16401.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16401.1
Unique NamemRNA_C-linearis_contig89.16401.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A6H5KRM5_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRM5_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 3.830e-93
Identity = 142/182 (78.02%), Postives = 160/182 (87.91%), Query Frame = 1 
Query:   58 VMSSDENDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILRAETDLSTLRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRKTAEQEQA-AESR 600
            V SSDE +  AVYMRLAL++AE+AL  GEVPVGCV+VH PTAR++SCGHNETSEAFNATRHAELVAID ILRA+TDL  L ECDL+VTCEPCIMCAAALR+VKIK VVFGCSN+RFGGCGSVLSVH+ SLPM+GHTYPC SGLLADEA+AL KQFYS +N +AP PKRRKT + EQ  AE+R
Sbjct:    7 VASSDEQN--AVYMRLALKEAEMALSKGEVPVGCVVVHKPTARIISCGHNETSEAFNATRHAELVAIDGILRAQTDLCLLSECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTGQHEQPPAETR 186
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A482UKK3_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKK3_9ARCH)

HSP 1 Score: 175 bits (443), Expect = 9.510e-50
Identity = 88/163 (53.99%), Postives = 110/163 (67.48%), Query Frame = 1 
Query:   79 DTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILRAETDLSTLRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            D V  +M+LA+QQAEIA+ + EVPVGCV V   T  V+  G N+T+   NATRHAELVAID+IL     +   + CDLYVTCEPCIMCAAAL +++I  V FGC N+RFGG GS+L +H        H Y   SG+L DEA+ + ++FY  EN RAP  KRRK
Sbjct:    2 DEVKNFMKLAIQQAEIAIEHSEVPVGCVFVDRTTKEVLGSGFNQTNLTLNATRHAELVAIDAILSHGHSVEAFKNCDLYVTCEPCIMCAAALAKLQIAKVFFGCHNDRFGGNGSILHIHTNPYG-NAHAYDVESGVLKDEAIEIFQRFYDRENERAPESKRRK 163
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: R4XI84_TAPDE (tRNA-specific adenosine deaminase subunit tad2 n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XI84_TAPDE)

HSP 1 Score: 171 bits (433), Expect = 7.610e-48
Identity = 84/164 (51.22%), Postives = 112/164 (68.29%), Query Frame = 1 
Query:   64 SSDENDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILRAETDLSTLRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVP 555
            ++DE+     +M++ALQQAE AL N EVPVGCV VH PT  V++ G N+T+ + N T HAE VAI+SILR     S  RE DLYVT EPC+MCA+ALR+++++ V FGC N+RFGGCGSV S+H+ +       Y   SG+   EA+ LL++FY  +N  AP P
Sbjct:   20 AADESGAADAFMQIALQQAETALLNKEVPVGCVFVHQPTGTVLATGANQTNASLNGTLHAEFVAIESILRDHPP-SIFRESDLYVTVEPCVMCASALRQLQVRKVYFGCGNDRFGGCGSVFSIHSDASKTGDAAYMVESGIFRKEAIMLLRRFYLLQNESAPKP 182
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A4U5UP48_COLLU (tRNA-specific adenosine deaminase 2 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4U5UP48_COLLU)

HSP 1 Score: 169 bits (427), Expect = 3.940e-47
Identity = 91/168 (54.17%), Postives = 113/168 (67.26%), Query Frame = 1 
Query:   79 DTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILR--AETDLSTLRECD---LYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            + +  +M  A   A+ AL NGEVPVGC++V+G    VV  G NE +E  NATRHAE+VA+D +L      +L T   C+   LYVT EPCIMCAAALR +++ +VV+GC N RFGGCGSVL V +A+LP TG T+ C SG  ADEAV +LK FY  EN  AP PK RK
Sbjct:   17 EEIEKWMDSAFDMAKDALENGEVPVGCLMVYGD--EVVGKGRNEVNETKNATRHAEMVALDQLLDWCRSRNLDTRSVCERTALYVTVEPCIMCAAALRLIRLPVVVYGCRNERFGGCGSVLDVSSANLPQTGTTFKCVSGHRADEAVEMLKTFYKQENPNAPKPKTRK 182
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: UPI001113DA8E (tRNA-specific adenosine deaminase 2 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=UPI001113DA8E)

HSP 1 Score: 168 bits (425), Expect = 1.030e-46
Identity = 91/169 (53.85%), Postives = 112/169 (66.27%), Query Frame = 1 
Query:   76 NDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSIL----RAETDL-STLRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            +D +  +M  A   A  AL NGEVPVGC++V+     VV  G NE +E  NATRHAE+VA+D +L    R++ D+ S   +  LYVT EPCIMCAAALR + + +VVFGC N RFGGCGSVL V +A LP TG T+ C SG  A+EAV +LK FY  EN  AP PK RK
Sbjct:   19 DDDIEKWMAKAFDMAREALENGEVPVGCLMVYND--EVVGKGRNEVNETKNATRHAEMVALDQLLDWCHRSKQDVQSVCEQSALYVTVEPCIMCAAALRLLNVPVVVFGCRNERFGGCGSVLDVSSADLPQTGATFKCVSGHRAEEAVEMLKSFYKQENPNAPKPKTRK 185
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A4D9D5M2_9STRA (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.970e-46
Identity = 86/176 (48.86%), Postives = 110/176 (62.50%), Query Frame = 1 
Query:   94 YMRLALQQAEIALRNGEVPVGCVIVHGPTA------------------RVVSCGHNETSEAFNATRHAELVAIDSILRAETDLSTLRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            +M++AL + +IA+  GEVPVG V VH P +                  +++  GHN T+   N TRHAELV +D IL      S  +ECD+YVTCEPCIMCA AL  +KI+ VVFGC N+RFGGCGS+LSVH A  P   H Y   +GL+ +EA+ L K FY+ EN +AP  KRRK
Sbjct:   11 FMKIALAEGQIAIEEGEVPVGVVFVHRPDSPKNTACSIDSSVSVSGPGKILGKGHNRTNATKNGTRHAELVIVDEILARGNPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGA--PHLRHRYVADAGLMENEAITLFKSFYARENRQAPDTKRRK 184
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A6G0I5R6_LARCR (tRNA-specific adenosine deaminase 2 n=2 Tax=Eupercaria TaxID=1489922 RepID=A0A6G0I5R6_LARCR)

HSP 1 Score: 166 bits (420), Expect = 4.290e-46
Identity = 94/182 (51.65%), Postives = 115/182 (63.19%), Query Frame = 1 
Query:   37 QTAEKTQVMSSDENDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILR--AETDLSTLRECD---LYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            +  E      SDE   +  +M  A   A+ AL NGEVPVGC++V+     VV  G NE +E  NATRHAE+VA+D +L      +L T   C+   LYVT EPCIMCAAALR + + +VV+GC N RFGGCGSVL V +A+LP TG T+ C SG  ADEAV +LK FY  EN  AP PK RK
Sbjct:    5 EAGEADSFCPSDEE--IEKWMDSAFDMAKDALENGEVPVGCLMVYSD--EVVGKGRNEVNETKNATRHAEMVALDQLLDWCRSRNLDTRSVCERTALYVTVEPCIMCAAALRLISLPVVVYGCRNERFGGCGSVLDVSSANLPQTGTTFKCVSGHRADEAVEMLKTFYKQENPNAPKPKTRK 182
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: UPI00189E407C (tRNA-specific adenosine deaminase 2 isoform X1 n=2 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189E407C)

HSP 1 Score: 166 bits (419), Expect = 6.030e-46
Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = 1 
Query:   76 NDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSIL----RAETDLSTL-RECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            ++ V  +M  A   A+ AL NGEVPVGC++V+G    VV  G NE +E  NATRHAE+VA+D +L    R+  D+S + +   LYVT EPCIMCAAALR + I +V++GC N RFGGCGSVL V +A LP TG T+ C SG  A+EAV +LK FY  EN  AP P+ RK
Sbjct:   16 DEEVERWMSSAFNMAKDALENGEVPVGCLMVYGD--EVVGKGRNEVNETKNATRHAEMVALDQLLDWCRRSNLDVSGVCKRTALYVTVEPCIMCAAALRLLNIPVVMYGCRNERFGGCGSVLDVSSADLPQTGTTFKCVSGHRAEEAVEMLKSFYKQENPNAPKPRTRK 182
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: A0A6J8E093_MYTCO (tRNA-specific adenosine deaminase 2 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8E093_MYTCO)

HSP 1 Score: 165 bits (418), Expect = 6.420e-46
Identity = 83/162 (51.23%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:   94 YMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILR--AETDLST---LRECDLYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRR 564
            +M      AE AL++GEVPVGC++V+    + ++ G NE +E  NATRHAE+VAID +L+   E DL +    REC LYVT EPCIMCA ALR+V+I +V++GC+N+RFGGCGS+L VH+A LP  G +  C S ++A+ A+ LLK FY  +N  AP  KR+
Sbjct:   11 WMEKTFDLAEEALKSGEVPVGCLLVYD--GKEIAVGRNEVNETKNATRHAEIVAIDKVLKFSEENDLDSKAVFRECILYVTVEPCIMCAGALRQVEIPLVIYGCANDRFGGCGSILPVHSAELPSLGPSLQCISNVMAERAIQLLKDFYKGQNLNAPENKRK 170
[Close]
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Match: UPI001896F6E7 (tRNA-specific adenosine deaminase 2 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI001896F6E7)

HSP 1 Score: 165 bits (417), Expect = 1.310e-45
Identity = 90/168 (53.57%), Postives = 112/168 (66.67%), Query Frame = 1 
Query:   79 DTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNETSEAFNATRHAELVAIDSILR--AETDLSTLRECD---LYVTCEPCIMCAAALREVKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVALLKQFYSTENTRAPVPKRRK 567
            D +  +M  A + A  AL NGEVPVGC++V+    +VV  G NE +E  NATRHAE+VA+D +L     ++L   R C+   LYVT EPCIMCAAALR +KI +VV+GC N RFGGCGSVL + +A LP TG  + C SG  A+EAV +LK FY  EN  AP PK RK
Sbjct:   20 DEIEKWMCSAFEMASDALNNGEVPVGCLMVYED--KVVGRGRNEVNETKNATRHAEMVALDQVLDWCRHSNLDVGRVCERTALYVTVEPCIMCAAALRLLKIPVVVYGCGNERFGGCGSVLDISSADLPHTGTKFKCVSGHRAEEAVEMLKTFYKQENPNAPKPKTRK 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRM5_9PHAE3.830e-9378.02CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A482UKK3_9ARCH9.510e-5053.99Nucleoside deaminase n=1 Tax=archaeon TaxID=190666... [more]
R4XI84_TAPDE7.610e-4851.22tRNA-specific adenosine deaminase subunit tad2 n=1... [more]
A0A4U5UP48_COLLU3.940e-4754.17tRNA-specific adenosine deaminase 2 n=2 Tax=Percom... [more]
UPI001113DA8E1.030e-4653.85tRNA-specific adenosine deaminase 2 n=1 Tax=Echene... [more]
A0A4D9D5M2_9STRA1.970e-4648.86CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6G0I5R6_LARCR4.290e-4651.65tRNA-specific adenosine deaminase 2 n=2 Tax=Euperc... [more]
UPI00189E407C6.030e-4653.25tRNA-specific adenosine deaminase 2 isoform X1 n=2... [more]
A0A6J8E093_MYTCO6.420e-4651.23tRNA-specific adenosine deaminase 2 n=3 Tax=Mytilu... [more]
UPI001896F6E71.310e-4553.57tRNA-specific adenosine deaminase 2 n=1 Tax=Nemato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:252332..256740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue1.1e-74
Seed eggNOG ortholog2880.D8LH63
Preferred nameTAD2
KEGG rclassRC00074,RC00514,RC00809
KEGG koko:K01485,ko:K15441
KEGG ReactionR00974,R01411,R02922
KEGG Pathwayko00240,ko00330,ko01100,map00240,map00330,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0019239,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1902494
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
Ec32 ortholog descriptionCMP/dCMP deaminase, zinc-binding
Ec32 orthologEc-24_000690.1
EC3.5.4.1
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons6
Model size1250
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16401.1prot_C-linearis_contig89.16401.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 252979..256680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.778876-UTR-C-linearis_contig89:252331..2529781622930690.778876-UTR-C-linearis_contig89:252331..252978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 252332..252978 -
1690881198.818705-UTR-C-linearis_contig89:252331..2529781690881198.818705-UTR-C-linearis_contig89:252331..252978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 252332..252978 -
1622930690.884725-UTR-C-linearis_contig89:256680..2567401622930690.884725-UTR-C-linearis_contig89:256680..256740Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 256681..256740 -
1690881198.898262-UTR-C-linearis_contig89:256680..2567401690881198.898262-UTR-C-linearis_contig89:256680..256740Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 256681..256740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.8004174-CDS-C-linearis_contig89:252978..2530371622930690.8004174-CDS-C-linearis_contig89:252978..253037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 252979..253037 -
1690881198.8336346-CDS-C-linearis_contig89:252978..2530371690881198.8336346-CDS-C-linearis_contig89:252978..253037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 252979..253037 -
1622930690.814452-CDS-C-linearis_contig89:253727..2538281622930690.814452-CDS-C-linearis_contig89:253727..253828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 253728..253828 -
1690881198.8449626-CDS-C-linearis_contig89:253727..2538281690881198.8449626-CDS-C-linearis_contig89:253727..253828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 253728..253828 -
1622930690.8262956-CDS-C-linearis_contig89:254747..2548791622930690.8262956-CDS-C-linearis_contig89:254747..254879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 254748..254879 -
1690881198.85565-CDS-C-linearis_contig89:254747..2548791690881198.85565-CDS-C-linearis_contig89:254747..254879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 254748..254879 -
1622930690.8395312-CDS-C-linearis_contig89:255990..2560731622930690.8395312-CDS-C-linearis_contig89:255990..256073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 255991..256073 -
1690881198.8668022-CDS-C-linearis_contig89:255990..2560731690881198.8668022-CDS-C-linearis_contig89:255990..256073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 255991..256073 -
1622930690.8561094-CDS-C-linearis_contig89:256380..2564911622930690.8561094-CDS-C-linearis_contig89:256380..256491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256381..256491 -
1690881198.8773758-CDS-C-linearis_contig89:256380..2564911690881198.8773758-CDS-C-linearis_contig89:256380..256491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256381..256491 -
1622930690.8729966-CDS-C-linearis_contig89:256623..2566801622930690.8729966-CDS-C-linearis_contig89:256623..256680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256624..256680 -
1690881198.8893654-CDS-C-linearis_contig89:256623..2566801690881198.8893654-CDS-C-linearis_contig89:256623..256680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 256624..256680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16401.1

>prot_C-linearis_contig89.16401.1 ID=prot_C-linearis_contig89.16401.1|Name=mRNA_C-linearis_contig89.16401.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp
MSSDENDTVAVYMRLALQQAEIALRNGEVPVGCVIVHGPTARVVSCGHNE
TSEAFNATRHAELVAIDSILRAETDLSTLRECDLYVTCEPCIMCAAALRE
VKIKMVVFGCSNNRFGGCGSVLSVHNASLPMTGHTYPCRSGLLADEAVAL
LKQFYSTENTRAPVPKRRKTAEQEQAAESR*
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mRNA from alignment at C-linearis_contig89:252332..256740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16401.1 ID=mRNA_C-linearis_contig89.16401.1|Name=mRNA_C-linearis_contig89.16401.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4409bp|location=Sequence derived from alignment at C-linearis_contig89:252332..256740- (Chordaria linearis ClinC8C monoicous)
CTTGTAGCCAGGGGCCAAGACTCATAACCAGCGAGGCAGACAGCAGAAAA
GACCCAAGTGATGTCTTCCGACGAGAACGATACGGTCGCGGTGTACATGA
GGCTCGCTCTACAGCAGGTTAGTCACTGGGTTAGGTTAGTTTCTGGATTT
CCAAAGACTTTTCCTTCCGGGGAGCAAAGTGCGTGGGTAACTCTGGTAAG
ACAACTCCCTCTCTGTGCATGCCGTTTATTTTTCTCGTGGTGTCTACAGG
CGGAAATAGCTCTGCGCAATGGAGAGGTTCCCGTGGGCTGCGTCATTGTG
CATGGGCCGACGGCACGGGTTGTGAGCTGTGGCCACAACGAAACTAGCGA
AGCTTTCAACGTGAGAACCCGCCACGTGATGGTGTATTCCATCTCTGGCC
CTTCCTGGTACTCTGTATGTGTATTTTTCATATATTTTACTTCTTTTATT
TATTTTTTCTCGCCCGCCTCCTTCTTCACTATAACTAGCTAGGCTATCCG
GGGTCACACATGAGGGGATGTCTCCACCTACCTCCTGCGGTGCTATGTAC
AACGTGCGCTGCACCTGCGTATGTACACTACAATAGACTTCTCGCCAAGC
ACTCCCCAAAGGCGCATTGCACTTCCACCAACACAGCCAACCTCGAGTCT
GCTAAAAAAACGCGCAGGCTACTCGGCATGCGGAACTTGTGGCCATCGAC
AGCATTTTACGAGCAGAGACGGATCTCTCCACATTGAGAGAATGCGATTT
GTGAGTGGTGTCGATACCATAGGTGTACTTCCATCGCCGTTGAGATACAA
CGAGAACCGCGCATTGTTTACGACCGCAATGCGCCCATTTGAGAGAGCGG
GCTCGAATGGGCACAAAATATACCCGATCCTTGGAACGGAGGAAGCAGCG
AGCAGTGCGCATCAACTCAACTCGGGTAGATTCTACAGGATGCTATTCGT
GGAGTAGGCATGCACACCGCGCCCTGCCGTCGAAACATCGCAAAAGCCTT
CCACAAGGACTAGACTAGTGCAGTTTGTCTTTTGTCCGGCACTTCGTTTG
TGGCGTCTGAGTTTTGGGGCCTTTTGGTCTGCTTCATTGTAAAGCGTTTG
TGTCGATGTTTGAGGGGTCTTTGTTTTCCCTGGATGTTGTGAGAAGACAG
TCAGGGGCCATGTAGGGCTACCACATCAGTTGGACCACCTCGGACGTTCG
ACGGTACCAAGCTTGTCGGTGAGGAGGCAAAAAATAAAAGCCACGATGAA
ATGGCTGACATTGTCAGGAGAAAGCGAGAGGCATCCAATGCTCTGACACA
GATCGGGGCACGTTTTATAAATCACAACTGCATCAAAGAAAGAACCTCCC
CTCAAAGAGGCAACCTCAAGTGGTGGATTAACAGTTCAATACAGAGTGAC
GTTATATGGTATAGGTGGAGAACAAAAACACCTAAAACTGGGAAAACGCC
ATAAACCTCCCCTGCAAGCACGTTTTGTTGTGATGGGAGCATACGCTCCA
AGCATTCCCGGCACTTGTTCGCCCCCCGATGTTGGCGGAGCCTAAGGGCA
CACCCTACAGTAGGCCCTCGCTGGCGTCGGCGAGTGAAGGCGTTTGTGCG
TGTCGCGATGTCGGGATGTCGAGCGGTTGCAGGAGGTCAGGTAAAGCCTG
GCCACCTGAGTGTGTATTAAGCTGTTGCCCACTCAATTTGTGAACCCACC
GGCCTTCCCTGCTCGGTGCTATTCCGAATCTTGCGGATGCTCTTCAGGCC
GGGCACGTTTTAATTGGGTGCTACAAGTCGTTATGGACCAAAAATGTCGC
CCATTTTCGGCCTGCTGGCCCGCATTTGACACGTCCCAACTTGATGCCCC
GAAAAACACAGGTATGTAACGTGCGAGCCATGCATCATGTGTGCAGCAGC
GTTGCGTGAGGTGAAGATCAAAATGGTGGTGTTCGGGTGCAGCAACAATC
GATTCGGAGGCTGTGGGTCAGTGCTCAGTGTTCACAACGCCAGGTATTGA
CAGCTTGCAAGTTTATGGCTGCTGCACATCAACTGCCACCGCGCCTCTTC
AACCCTAATCGGTATGGTGAAGAAGTCGCAGCAATGTGGCTTTCATTGTA
CCATCCAAGGAGTCTTGCCTAAACACTCCTCTAGTGGCTAACGTGTGACT
TTGAGCCGGGGCAAAGCACTTCACATATGTACGGGTGCTCAATCCCAACA
TTTGCCACGTTCGCAGACCACATTATTTTGTTTCCCCCAAGAGGTTAACT
AGAGGCAGGATGCGCGTAGGATCCGTTTTCTGTTGATAATTTTTTAGGGT
TATTAGGAGGGTAATCTGTAGCGCTGTAGATCAGGTTTCCGAAATATGAT
TTGCCTCCCACAAAAAAACACCAAAACAAAACAAAATCAAACACCCGTAA
TATTTTACCGTTACCATTTTCACGCTCTTACGCATTCTGAAAGCGGCCCG
ATCGAATATTTTTTTGTAAATCATCGGATCACTTTTATACTGCGATATCT
TATCTTCGAAGAGGGCCAGGAACGAAACTTCCAACCCAGAAGGAGACGGC
TCTGGATCCATAACAGTCACGGTACGGTGTTGCTGTTTGTCTCTTCATCC
CAACAGCCACCCGACGTCTCTAGTAGATGCCTCCACAAATCGCTTAGCGG
TCTGAAACAAGGGTAACCCCCCCCCTGATGTCGGCAGTATTCGCTTGCGA
CCACTCCTCGGTAACACTTTGCAAAGCAACACCACAACACTTGTACTCTC
TGGCTGACCTGTATAGGGTCGCGGCGAACGCAGAACTTGTTTCGTGAACT
TTAGGAAGCCGCAAACTGACGAAAGAAAACGTGAAAACAAAAAACCGAGT
TCCTCCGAAAGCTCAGGACAACAGCAGTAACCTTGCCCGTTGACGTGTTT
CATCTCGTGCAGTCTTCCAATGACAGGGCACACATATCCCTGCCGTTCTG
GACTTCTAGCCGACGAAGCTGTGGCATTACTCAAGCAATTCTACTCTACA
GAGAACACCAGAGGTTAGAGGCTACTTTGGCCTCTTTGGGGTTGCGTTTG
CACCAAAGCTTGGTGCCATCTATTTAGTCAAGAAAGGCGGACTGGAATTT
CTGAAGTGACAGAGGCGCGTGTTTTGCTTCCTTCATGTATGTGTGTGTGT
GTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTTCCGATCAAGGCGAGA
CGTGTACTACACGTTGCGGTGTATTTAGAGTAGTACACTTGTTCAGTGTA
TTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGTAAACAC
TGGGGCTTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCT
GCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTTC
CCTCGTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCT
ATTTTATCGCTTTCACCTGCAAAGTCGCAAAAGAAACACCCTTGCTTGGA
ATCGAACTCTAGACTTCGCTGCTAGTGGGTTCGAGGTTAAACCACTAGTC
CACCGGGGCGACCGGCTTCATGTATACTGGCGATTTTAACGCTTAGATTT
TTGCGGTTCGGAGGGAAGGCGAGTTTTGATACTTGTCAGACGCAGTATAG
GAACACACGCCCACTCAAACCGTTTCGTCGACTCTTTACGATTGATTTTC
CAGCGCCGGTGCCCAAACGAAGAAAAACGGCGGAACAAGAACAAGCCGCG
GAATCGAGATGACGAGATCCGGTCTGAAGGTGGAAGCTAGTCTGAATTCC
AAGGAAACTCCCGCTGTTTGGGTTGCGAGCGAGTGAGAGAGCGCGCTCTT
CGTGGGGCGGATTCACCATGGCTACATGACCGTTTCCAGCAGCAACGAAG
TTTTGAAGGACGTGTCGTTGGGCATTCTCTTTGTCGACCTGTTAGCCTTT
GGGATCATTTTATGTTGTTTGTCTCGCCAAGGTCCTTGTCGAAGATTCCA
AGATTTCAATGAAGTCTCATCGCCTAACATGGGGTGCTGATTGTGCTGCT
GGTACGTCCATGACTCAAGCAAACGACCTCTTCCTTGGGGCACAGGATGA
TAGTTTTTTTCTCCGCCTCTGGCTCAATTCTGTTGCACCTGGAACTTGAC
TGTAGGTTTTATAGCAATGGATGAATGCAGTGTACCAGACGCCAGACTAA
GCTACCCCTCCGGCACCATACATCATGCCTGACTTTCGCTCGTCCCAACG
ACTGCAAGAAAATCTGCACCCTGGCGTCTCGCACCCAAACGCCACTCGGC
AAATATCGGAACACGACATTGAAACCCAGACAAACGCTTTAGTATCGTCA
TTTGACCAGAGTAACGAATTACTACTCTGTGTTTAAGTGAAACGAAAATA
TAGGACCCT
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Coding sequence (CDS) from alignment at C-linearis_contig89:252332..256740-

>mRNA_C-linearis_contig89.16401.1 ID=mRNA_C-linearis_contig89.16401.1|Name=mRNA_C-linearis_contig89.16401.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at C-linearis_contig89:252332..256740- (Chordaria linearis ClinC8C monoicous)
ATGTCTTCCGACGAGAACGATACGGTCGCGGTGTACATGAGGCTCGCTCT
ACAGCAGATGTCTTCCGACGAGAACGATACGGTCGCGGTGTACATGAGGC
TCGCTCTACAGCAGGCGGAAATAGCTCTGCGCAATGGAGAGGTTCCCGTG
GGCTGCGTCATTGTGCATGGGCCGACGGCACGGGTTGTGAGCTGTGGCCA
CAACGAAACTAGCGAAGCTTTCAACGCGGAAATAGCTCTGCGCAATGGAG
AGGTTCCCGTGGGCTGCGTCATTGTGCATGGGCCGACGGCACGGGTTGTG
AGCTGTGGCCACAACGAAACTAGCGAAGCTTTCAACGCTACTCGGCATGC
GGAACTTGTGGCCATCGACAGCATTTTACGAGCAGAGACGGATCTCTCCA
CATTGAGAGAATGCGATTTGCTACTCGGCATGCGGAACTTGTGGCCATCG
ACAGCATTTTACGAGCAGAGACGGATCTCTCCACATTGAGAGAATGCGAT
TTGTATGTAACGTGCGAGCCATGCATCATGTGTGCAGCAGCGTTGCGTGA
GGTGAAGATCAAAATGGTGGTGTTCGGGTGCAGCAACAATCGATTCGGAG
GCTGTGGGTCAGTGCTCAGTGTTCACAACGCCAGGTATGTAACGTGCGAG
CCATGCATCATGTGTGCAGCAGCGTTGCGTGAGGTGAAGATCAAAATGGT
GGTGTTCGGGTGCAGCAACAATCGATTCGGAGGCTGTGGGTCAGTGCTCA
GTGTTCACAACGCCAGTCTTCCAATGACAGGGCACACATATCCCTGCCGT
TCTGGACTTCTAGCCGACGAAGCTGTGGCATTACTCAAGCAATTCTACTC
TACAGAGAACACCAGAGTCTTCCAATGACAGGGCACACATATCCCTGCCG
TTCTGGACTTCTAGCCGACGAAGCTGTGGCATTACTCAAGCAATTCTACT
CTACAGAGAACACCAGAGCGCCGGTGCCCAAACGAAGAAAAACGGCGGAA
CAAGAACAAGCCGCGGAATCGAGATGACGCCGGTGCCCAAACGAAGAAAA
ACGGCGGAACAAGAACAAGCCGCGGAATCGAGATGA
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