mRNA_C-linearis_contig89.16400.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16400.1
Unique NamemRNA_C-linearis_contig89.16400.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 4.730e-71
Identity = 142/294 (48.30%), Postives = 184/294 (62.59%), Query Frame = 3
Query:  651 FPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
            FPY+ GWA P L S  + + LP + PFYLKKVFVWVPE+++  ++ I CP+  C    A  DGW   +PRRVFL+DD+ YLIG+RY C  C + NK     + + +R   +FNAWD GVLA +D YV+  FPFVL++K+ ++K++V RLADDLL G GF+A S      Y   Y  +  SYVSL NRC    +        G   +I  F    D  GF+ + PS  YL  +WH  FYET V+QADG   TR+ YL R AQLVDG  LAGDASFKYAKVIRL++  + T  +P+
Sbjct:    7 FPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEIEYIPCPH--CNKR-AQPDGWNT-EPRRVFLEDDVCYLIGYRYLCKGCTEANK----GRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMWPNVDLG---MIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPV 289          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 4.270e-69
Identity = 140/330 (42.42%), Postives = 195/330 (59.09%), Query Frame = 3
Query:  561 AQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPIKAS 1538
            AQ  F  E + K++  + HE G V  +   FP+D+    P  A+ Q +  LP++D FY K V VW+PEF+FP +Q + CP   CG   A  DGW  + PRRVF+D D+ Y++GFRY C KC ++NK     K + ++RK SFNAWD G L RL  Y++  FPF+L+++SG+   +V RLADDL++GKGFSA +   R+A+T  +M     Y SLVN  R    + +F  A     L  T   FG F D   + GA PS+ YLR V   +F +  V++ D V  T + Y HR+ Q  DG IL GD+SFK+AK+IRL +      T+P+  S
Sbjct:   44 AQERFFEEVKDKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNK----GKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGS 357          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.150e-67
Identity = 135/324 (41.67%), Postives = 192/324 (59.26%), Query Frame = 3
Query:  561 AQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
            AQ  F  E + K++  + HE G V  +   FP+D+    P  A+ Q +  LP++D FY K V VW+PEF+FP +Q + CP   CG   A  DGW  K PRRVF++ D+ Y++GFRY C KC ++NK     K + ++RK SFNAW  G L RL  Y++  FPF+L+++SG+   +V RLADDL++GKGFSA +    +A+T  +M     Y SLV+  R    + +F  A   + +   FG F D   + GA PS+ YLR VW  +F +  V++ D V  T + Y HR+ Q  DG IL GDA FK+AK+IRL +      T+P+
Sbjct:   44 AQERFFEEVKDKIDRSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNK----GKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRT--SSGIFRSANLAK-IPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSVDWTLEEYQHRLMQRWDGDILGGDALFKFAKIIRLGAKAGEERTRPV 354          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 4.810e-62
Identity = 123/264 (46.59%), Postives = 159/264 (60.23%), Query Frame = 3
Query:  576 VAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYE 1364
            + E +  + A   HE GKV  + S FPY DGWA PPL S Q+++ +P V+PFYLKKVFVWVPE+++  +  I CP+  CG      DGW     RRVFL+ D+ YLIG+RY C +C   N      KN + R  A+F AWD  VLAR+D +V+  FPFVL+RK+ ++++L+ RLADDLL GKGF+ATS   + AYT TY   Y SYVSL NR    ++             I  F + AD  GFN   PS  YL  +WH WF E
Sbjct:    9 IYEIKGNIKASRKHENGKV-KRISEFPYRDGWASPPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDCIPCPH--CGER-GQPDGWNT-DARRVFLEQDVCYLIGYRYYCKRCTDANA----MKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHKWFDE 263          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.460e-59
Identity = 136/352 (38.64%), Postives = 192/352 (54.55%), Query Frame = 3
Query:  555 SRAQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREA--------------------------YTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
            S AQ  F  + + K++  + HE G V  +   FP+D+    P  A+ Q +  LP VD FY K V VW+PEF+FP +Q + CP   CG   A  DGW  K PRRVF++ D+ Y++GFRY C KC K+N+     K + ++RK SFNAWD G L RL  Y++  FP +L+++SG+   +V RLADDL++GKGFSA +    +                            T  +M     Y SLVN  R    + +F  A   +     FG F D   + GA PS+ YLR VW  ++ +  V++ DGV  T + Y HR+ Q  DG +L+GDASFK+AK+IRL +      +KP+
Sbjct:   42 SSAQERFFQDVKVKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPGLPEVDWFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYIMGFRYKCAKCAKFNQ----GKEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRT--SSGIFRSANHAKTP-ERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPV 380          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.780e-55
Identity = 111/161 (68.94%), Postives = 125/161 (77.64%), Query Frame = 3
Query:  900 RYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKT-LVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQ 1379
            RYTC+ C K+NK+      DK RRK SFNAWDQGVLAR+DSYV+NAFPFVL+RKSG+A T +VARLADDLLNGKGFSATS F REAY N+YM +YHSYVSLVNRC++ I       A  G   I  FG F D EGFNGAWPSD YLRAVWH WFYET+VI+
Sbjct:  271 RYTCSGCLKHNKKK--GTGDKDRRKGSFNAWDQGVLARMDSYVSNAFPFVLTRKSGIATTAVVARLADDLLNGKGFSATSKFKREAYMNSYMMQYHSYVSLVNRCQRSIGGHFRAAAEEGTPDIPIFGGFGDREGFNGAWPSDQYLRAVWHKWFYETVVIE 429          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5L553_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L553_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.090e-51
Identity = 103/222 (46.40%), Postives = 142/222 (63.96%), Query Frame = 3
Query:  867 LDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAF-PFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
            +++D+GY+IGFRY C +C +YN     +  + ++R  SFNAWD G L RL  YV+  F PF+L+ +SG+   LV RLADDL +GKGFSA + + R+A+T  +M     YVSL N  R+    S+FG A     +   FG F D E + GA PSD YLR VW T+F E  V++ +GV+ T ++YL RV Q  DG +LAGDASFK+AK+IRL +      T+P+
Sbjct:    1 MEEDVGYIIGFRYKCERCVEYNG----TVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHRSGIDIRLVDRLADDLAHGKGFSAAAKYIRQAHTTKFMVYQLKYVSL-NDARRSSRVSLFGAAP----VPEKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVEGVKWTWEDYLPRVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPV 213          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.350e-50
Identity = 122/328 (37.20%), Postives = 169/328 (51.52%), Query Frame = 3
Query:  555 SRAQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQIECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
            S AQ  F  E + K++  +  E G V  +   FP+D+    P  A+ Q                                P+  CG   A  DGW  K PRRVF + D+ Y++ FRY C KC ++NK     K + ++ K SFNAWD G L RL  Y++  FPF+L+++SG+   +V RLADDL++GK FSA +   R+A+T  +M     Y SLVN  R    + +F  A     L  T   FG F D   + GA PS+ YLR VW  +F +  V++ D V  T + Y HR+ Q  DG IL GDASFK+AK+IRL +      T+P+
Sbjct:   39 SSAQERFFQEVKDKIDRSITLEEGGVKGR---FPFDNPLVRPKCATFQ--------------------------------PSPGCGGKGAP-DGWNPKGPRRVFTEHDVAYVMEFRYKCAKCAEFNK----GKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPV 320          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KNK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.700e-49
Identity = 100/228 (43.86%), Postives = 141/228 (61.84%), Query Frame = 3
Query:  711 LPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGV 1391
            LP++D FY K V VW+PEF+FP +Q + CP   CG   A  DGW  K PRRVF++ D+ Y++GFRY C KC ++N+     K + ++RK SFNAWD G L RL  Y++  F F+L+++SG+   +V RLADDL++GKGFSA +   R+A+T  +M     Y SLVN  R    + +F  A   + +   FG F D   + GA PS+ YLR VW  +F +  V++ D V
Sbjct:   17 LPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNE----GKQEAEKRKTSFNAWDAGCLRRLPEYMSKEFHFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSANLAK-IPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDSV 234          
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 3.720e-48
Identity = 103/239 (43.10%), Postives = 141/239 (59.00%), Query Frame = 3
Query:  831 DGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPIKAS 1538
            DGW  K PRRVF+D D+ Y++GFRY C K  ++NK     K + + RK   NAWD G L RL  Y++  FPF+L+++SG+   +V RLADDL++GKGFSA +   R+A+T  +M     Y SLVN  R    + +F  A     L  T   FG F D   + GA PS+ YLR V   +F +  V++ D V  T + Y HR+ Q  DG IL GD+SFK+AK+IRL +      T+P+  S
Sbjct:    8 DGWNPKGPRRVFMDHDVAYVMGFRYKCAKGAEFNK----GKQEAETRKTRVNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRHVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGS 236          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIV2_ECTSI4.730e-7148.303'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L7G9_9PHAE4.270e-6942.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE1.150e-6741.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM2_9PHAE4.810e-6246.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE5.460e-5938.643'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4M0_9PHAE1.780e-5568.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L553_9PHAE7.090e-5146.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX0_9PHAE2.350e-5037.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK9_9PHAE1.700e-4943.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT01_9PHAE3.720e-4843.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:226404..229648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.2
Seed ortholog evalue7.6e-68
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons6
Model size2186
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16400.1prot_C-linearis_contig89.16400.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 227012..228659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.5949447-UTR-C-linearis_contig89:226403..2270111622930690.5949447-UTR-C-linearis_contig89:226403..227011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 226404..227011 +
1690881198.7293792-UTR-C-linearis_contig89:226403..2270111690881198.7293792-UTR-C-linearis_contig89:226403..227011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 226404..227011 +
1622930690.6864007-UTR-C-linearis_contig89:228659..2286731622930690.6864007-UTR-C-linearis_contig89:228659..228673Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 228660..228673 +
1690881198.785522-UTR-C-linearis_contig89:228659..2286731690881198.785522-UTR-C-linearis_contig89:228659..228673Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 228660..228673 +
1622930690.7091875-UTR-C-linearis_contig89:228811..2289321622930690.7091875-UTR-C-linearis_contig89:228811..228932Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 228812..228932 +
1690881198.798277-UTR-C-linearis_contig89:228811..2289321690881198.798277-UTR-C-linearis_contig89:228811..228932Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 228812..228932 +
1622930690.7278836-UTR-C-linearis_contig89:229147..2296481622930690.7278836-UTR-C-linearis_contig89:229147..229648Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 229148..229648 +
1690881198.8085616-UTR-C-linearis_contig89:229147..2296481690881198.8085616-UTR-C-linearis_contig89:229147..229648Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 229148..229648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.6265488-CDS-C-linearis_contig89:227011..2271111622930690.6265488-CDS-C-linearis_contig89:227011..227111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227012..227111 +
1690881198.746487-CDS-C-linearis_contig89:227011..2271111690881198.746487-CDS-C-linearis_contig89:227011..227111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227012..227111 +
1622930690.6398048-CDS-C-linearis_contig89:227320..2275131622930690.6398048-CDS-C-linearis_contig89:227320..227513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227321..227513 +
1690881198.7557414-CDS-C-linearis_contig89:227320..2275131690881198.7557414-CDS-C-linearis_contig89:227320..227513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227321..227513 +
1622930690.6530004-CDS-C-linearis_contig89:227717..2281951622930690.6530004-CDS-C-linearis_contig89:227717..228195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227718..228195 +
1690881198.7649057-CDS-C-linearis_contig89:227717..2281951690881198.7649057-CDS-C-linearis_contig89:227717..228195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 227718..228195 +
1622930690.6711297-CDS-C-linearis_contig89:228488..2286591622930690.6711297-CDS-C-linearis_contig89:228488..228659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 228489..228659 +
1690881198.7748487-CDS-C-linearis_contig89:228488..2286591690881198.7748487-CDS-C-linearis_contig89:228488..228659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 228489..228659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16400.1

>prot_C-linearis_contig89.16400.1 ID=prot_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=314bp
MVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWV
PEFMFPGVQIECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYT
CNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSR
KSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNR
CRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWF
YETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGE
STTTKPIKASSPS*
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mRNA from alignment at C-linearis_contig89:226404..229648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16400.1 ID=mRNA_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3245bp|location=Sequence derived from alignment at C-linearis_contig89:226404..229648+ (Chordaria linearis ClinC8C monoicous)
CCAGCAGCAGGAAGGGCAAGGGCAAGAGGAAGGCGAAGCAGAAGGCACCC GCACCCGCACCCGCACCCACGCCTTCACCCACGCCTACCAGCAACGCCGG TCGCAAGGCCGGCGGGAAGAACCCGCCAGGTTCAAAGAAGACTGGACCGA AGCCGGCACCGCCACGGGGAGAGAGGATCACCAACTTTTAGGCCGAGTGC CGGCGCTAAACCCTCGCCTGGAACCACGCCGAGCAGCGCTGGCACGAATC CCCGAGGGCGCAGACACCCGACACCGCCGGGGGGAAATGGAGATGAAGAA GCTGGGGCGAGCAGCAGCGAGCAGCAGCAGAGCAAGCGGCGCAAGACAAA GCAGCAGCGGGAGCAGCAGCAGGCACGGGGCGGAGGGTGAGCGGCAGCGG CAACGAGAGCGTGGGGGGTGGTGGTGCTGGTGCTGGTGGCAGCGGCGGTG GCGGTGGCGGTGGCGGTGGCGGCGGTGGCAGTAGTGCACCGCAAGCCCCG TCTCCTGGGTCCGACGGCGAAGAGGAACAATAGAACGACTTCATTTTCCG TCTGTCGCGAGCGCAGCTGGCGTTTGTCGCCGAGGCGAGGGCAAAGGTGA ACGCTGGCATGGTGCACGAGCGAGGGAAGGTGGTGGACAAGGGGAGCGGT TTTCCCTATGACGATGGATGGGCGGTGCCTCCTCTGGCTTCGAGACAGAA GACTTCAGGTGAGCTCGTCTCTTATTATTTTTCGCCTGTGCCCCAAGTTG GTGCCTGCATTCAGAGTCCGACTGATTGCCGTTTCATCACATATGTTTAC ATGTTTACCCAATTCGTGGCAGACGTGTGTGGGGCTAGAGCAGTAGAATC AATTGACAATCATGGCTAACCAAATCGCTCGCACCCGCTCCGTTTCTTGT GTTTTCCTGCTTCTCAGCCTTGCCGCGCGTGGACCCTTTTTACTTGAAAA AGGTGTTCGTGTGGGTGCCGGAGTTCATGTTTCCAGGCGTCCAGATCGAA TGCCCAAACACAGAGTGTGGCCACCATCCAGCAAGCTCAGATGGGTGGAT CGCGAAGCAGCCCCGGCGCGTGTTTCTCGACGACGACATCGGATATCTCA TCGGTTTCAGGTGCGCGTAGTACTTTTGTGCTTTCTTCTGGAGCATTCCT CGAGCGACATGTTGCACTTGCTGTACGTCGACTATCACCGAAGACGACAA CAAGTGTGGAGTATGGTGCAGTATTGGTAGTGATGTTCGTAGCAACGCGC TTCAAACCATGACGTGATTTATACGTTCCCGCTCATTTATCTCGCCACCC TCGTCGTCCGGCAGGTACACCTGCAACAAGTGTGAGAAGTACAACAAAGA GAATCACTACAGCAAGAACGACAAAAAGCGCCGCAAAGCATCCTTCAACG CTTGGGACCAGGGTGTTCTTGCTCGCTTGGATTCGTACGTAACGAACGCG TTTCCTTTCGTGTTGAGCCGTAAAAGTGGGGTGGCGAAAACTCTTGTGGC ACGGTTGGCTGACGACTTACTCAACGGCAAAGGGTTTTCGGCGACTTCTA ACTTCACCCGTGAGGCGTACACGAACACGTATATGACAAAGTATCACAGC TACGTATCTCTAGTCAACCGCTGCCGGAAACACATTGAAGCCTCCGTGTT CGGAGATGCCACCGGGGGGGAAGCCCTCATCGCAACCTTTGGTGACTTCG CCGACGGCGAGGGCTTCAACGGCGCTTGGCCGTCGGACGCCTATCTTCGA GCTGTATGGCACACGTGGTTCTACGAAACTATTGTGATACAGGTATCTGG TCGGTTCATACATGGTAGCGTCGATGTCTCCGGTGTTGCGCGCCGCTTTC GATTCCGAATATGTAGTCCTTGGGCAGGATCGTTTGTTTTTCTCGCTTGA CACTCTTTGTTGATATGTTGTTGCCGGCCGCTTTCGATTTCTTAGAATCT GTTCGACAACACTCTGCTGTGGTGTCAAATGACTACTTCGTGGGCAGGAG ATTTTTTTCACGCTTGGCACTCTTTGTTGCTATGTTTGTGTATGTCGTTG CGATTTTTCCTTTGTGCCGCCCCTCTGGATGACAGGCTGACGGCGTTCGG ATGACGAGAGACAACTATCTTCATCGCGTCGCGCAGCTTGTGGACGGCAT GATCCTGGCTGGCGATGCTTCTTTCAAGTACGCGAAGGTCATCCGGTTGA CGTCTCCGGGAGAGTCGACGACCACCAAGCCCATCAAGGCATCTTCACCA TCTTGAACGAGTACGAGCAGGCGAGTTTTTTTACAAGCCCATCGTAAGTT TCGATGAACCCTTCGGTACGTTTCCTGAGATGGTACGCCTCGCTCTGTCA TACGCAATATCCGTTTAATATTTTGAATTGATCATGGTGGCGCCTCATAC TCTCGCAGGTGGTGTTCCAGAAGGCGATGAAGACTGCGTCCTTGCACGAT CTGAAGAGCGATTTGAAGGCCCTGTTCATCAACCGCTATCTTGCCCATGG CTTCAAGCTACCTATCATCCTATTCTCCGGTAAGTTGTTTGTTGGGGGTT CAGGGCGCTCCTCCCACGAACTCAGTGTCCTCTTCCACACTTTTTTAAGC ACTGATAAATCACCGCCGGTGGTGGGTGATGCCCACCTATGTCTGTTGCG TTTGCAAGGCGAGTAGGTGGGAAGTTGTGCGTTCATTTGATCTGAACTTC TTTTTCGGAAATGTTTATGTTCCACCCCGCCCTTCCCTACTCAGATGATT GCTGCGAAGATCGCGGGATGTTCGAAGCAATCGTCGAAGAGATCGAAGGG GAGACCGGTCGCCGCCTTTTCGACGCGAGCAGTTCGACAGCAGCCGGAGC CAACCTGGAATCTTTTGAGTTCCCGGCCGACAAGGAACCGATAGCCGTAG ACGTCTTGAACAAGAAGCATTGCGATCTTGCCGTGGCCACCCTTCTGCGC GGCTGCGCGGCGCAGGGGCGTGTGCTTGGGATGGACTGCGAGTGGGAGCC AGCGTTCAACGGCAGCTCGCGAACGTCATGTTGACGATGTACCCACTCCG CGACACCACGCCAGCTCTCCGTTCCGAACTTCAACGGCCGGCGGATGGCG CAGCGTTCAGCAACTCTGTTGCACAGGTCCAGCCGGTTCCCGTGGGCTTG AGCAAGACTGTCGCCGCTGCCGCTCGTGCTGCTGCAACTGCAGCTGCGAG CGGCTCTGCCCGCAGGGGGGGGGCAAGTGGGGAAGGGCAGCCGGC
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Coding sequence (CDS) from alignment at C-linearis_contig89:226404..229648+

>mRNA_C-linearis_contig89.16400.1 ID=mRNA_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at C-linearis_contig89:226404..229648+ (Chordaria linearis ClinC8C monoicous)
ATGGTGCACGAGCGAGGGAAGGTGGTGGACAAGGGGAGCGGTTTTCCCTA
TGACGATGGATGGGCGGTGCCTCCTCTGGCTTCGAGACAGAAGACTTCAG
ATGGTGCACGAGCGAGGGAAGGTGGTGGACAAGGGGAGCGGTTTTCCCTA
TGACGATGGATGGGCGGTGCCTCCTCTGGCTTCGAGACAGAAGACTTCAG
CCTTGCCGCGCGTGGACCCTTTTTACTTGAAAAAGGTGTTCGTGTGGGTG
CCGGAGTTCATGTTTCCAGGCGTCCAGATCGAATGCCCAAACACAGAGTG
TGGCCACCATCCAGCAAGCTCAGATGGGTGGATCGCGAAGCAGCCCCGGC
GCGTGTTTCTCGACGACGACATCGGATATCTCATCGGTTTCAGCCTTGCC
GCGCGTGGACCCTTTTTACTTGAAAAAGGTGTTCGTGTGGGTGCCGGAGT
TCATGTTTCCAGGCGTCCAGATCGAATGCCCAAACACAGAGTGTGGCCAC
CATCCAGCAAGCTCAGATGGGTGGATCGCGAAGCAGCCCCGGCGCGTGTT
TCTCGACGACGACATCGGATATCTCATCGGTTTCAGGTACACCTGCAACA
AGTGTGAGAAGTACAACAAAGAGAATCACTACAGCAAGAACGACAAAAAG
CGCCGCAAAGCATCCTTCAACGCTTGGGACCAGGGTGTTCTTGCTCGCTT
GGATTCGTACGTAACGAACGCGTTTCCTTTCGTGTTGAGCCGTAAAAGTG
GGGTGGCGAAAACTCTTGTGGCACGGTTGGCTGACGACTTACTCAACGGC
AAAGGGTTTTCGGCGACTTCTAACTTCACCCGTGAGGCGTACACGAACAC
GTATATGACAAAGTATCACAGCTACGTATCTCTAGTCAACCGCTGCCGGA
AACACATTGAAGCCTCCGTGTTCGGAGATGCCACCGGGGGGGAAGCCCTC
ATCGCAACCTTTGGTGACTTCGCCGACGGCGAGGGCTTCAACGGCGCTTG
GCCGTCGGACGCCTATCTTCGAGCTGTATGGCACACGTGGTTCTACGAAA
CTATTGTGATACAGGTACACCTGCAACAAGTGTGAGAAGTACAACAAAGA
GAATCACTACAGCAAGAACGACAAAAAGCGCCGCAAAGCATCCTTCAACG
CTTGGGACCAGGGTGTTCTTGCTCGCTTGGATTCGTACGTAACGAACGCG
TTTCCTTTCGTGTTGAGCCGTAAAAGTGGGGTGGCGAAAACTCTTGTGGC
ACGGTTGGCTGACGACTTACTCAACGGCAAAGGGTTTTCGGCGACTTCTA
ACTTCACCCGTGAGGCGTACACGAACACGTATATGACAAAGTATCACAGC
TACGTATCTCTAGTCAACCGCTGCCGGAAACACATTGAAGCCTCCGTGTT
CGGAGATGCCACCGGGGGGGAAGCCCTCATCGCAACCTTTGGTGACTTCG
CCGACGGCGAGGGCTTCAACGGCGCTTGGCCGTCGGACGCCTATCTTCGA
GCTGTATGGCACACGTGGTTCTACGAAACTATTGTGATACAGGCTGACGG
CGTTCGGATGACGAGAGACAACTATCTTCATCGCGTCGCGCAGCTTGTGG
ACGGCATGATCCTGGCTGGCGATGCTTCTTTCAAGTACGCGAAGGTCATC
CGGTTGACGTCTCCGGGAGAGTCGACGACCACCAAGCCCATCAAGGCATC
TTCACCATCTTGAGCTGACGGCGTTCGGATGACGAGAGACAACTATCTTC
ATCGCGTCGCGCAGCTTGTGGACGGCATGATCCTGGCTGGCGATGCTTCT
TTCAAGTACGCGAAGGTCATCCGGTTGACGTCTCCGGGAGAGTCGACGAC
CACCAAGCCCATCAAGGCATCTTCACCATCTTGA
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