mRNA_C-linearis_contig89.16400.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 259 bits (663), Expect = 4.730e-71 Identity = 142/294 (48.30%), Postives = 184/294 (62.59%), Query Frame = 3
Query: 651 FPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
FPY+ GWA P L S + + LP + PFYLKKVFVWVPE+++ ++ I CP+ C A DGW +PRRVFL+DD+ YLIG+RY C C + NK + + +R +FNAWD GVLA +D YV+ FPFVL++K+ ++K++V RLADDLL G GF+A S Y Y + SYVSL NRC + G +I F D GF+ + PS YL +WH FYET V+QADG TR+ YL R AQLVDG LAGDASFKYAKVIRL++ + T +P+
Sbjct: 7 FPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEIEYIPCPH--CNKR-AQPDGWNT-EPRRVFLEDDVCYLIGYRYLCKGCTEANK----GRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMWPNVDLG---MIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPV 289
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE) HSP 1 Score: 241 bits (616), Expect = 4.270e-69 Identity = 140/330 (42.42%), Postives = 195/330 (59.09%), Query Frame = 3
Query: 561 AQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPIKAS 1538
AQ F E + K++ + HE G V + FP+D+ P A+ Q + LP++D FY K V VW+PEF+FP +Q + CP CG A DGW + PRRVF+D D+ Y++GFRY C KC ++NK K + ++RK SFNAWD G L RL Y++ FPF+L+++SG+ +V RLADDL++GKGFSA + R+A+T +M Y SLVN R + +F A L T FG F D + GA PS+ YLR V +F + V++ D V T + Y HR+ Q DG IL GD+SFK+AK+IRL + T+P+ S
Sbjct: 44 AQERFFEEVKDKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNK----GKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGS 357
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.150e-67 Identity = 135/324 (41.67%), Postives = 192/324 (59.26%), Query Frame = 3
Query: 561 AQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
AQ F E + K++ + HE G V + FP+D+ P A+ Q + LP++D FY K V VW+PEF+FP +Q + CP CG A DGW K PRRVF++ D+ Y++GFRY C KC ++NK K + ++RK SFNAW G L RL Y++ FPF+L+++SG+ +V RLADDL++GKGFSA + +A+T +M Y SLV+ R + +F A + + FG F D + GA PS+ YLR VW +F + V++ D V T + Y HR+ Q DG IL GDA FK+AK+IRL + T+P+
Sbjct: 44 AQERFFEEVKDKIDRSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNK----GKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRT--SSGIFRSANLAK-IPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSVDWTLEEYQHRLMQRWDGDILGGDALFKFAKIIRLGAKAGEERTRPV 354
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE) HSP 1 Score: 223 bits (569), Expect = 4.810e-62 Identity = 123/264 (46.59%), Postives = 159/264 (60.23%), Query Frame = 3
Query: 576 VAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYE 1364
+ E + + A HE GKV + S FPY DGWA PPL S Q+++ +P V+PFYLKKVFVWVPE+++ + I CP+ CG DGW RRVFL+ D+ YLIG+RY C +C N KN + R A+F AWD VLAR+D +V+ FPFVL+RK+ ++++L+ RLADDLL GKGF+ATS + AYT TY Y SYVSL NR ++ I F + AD GFN PS YL +WH WF E
Sbjct: 9 IYEIKGNIKASRKHENGKV-KRISEFPYRDGWASPPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDCIPCPH--CGER-GQPDGWNT-DARRVFLEQDVCYLIGYRYYCKRCTDANA----MKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHKWFDE 263
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE) HSP 1 Score: 227 bits (578), Expect = 5.460e-59 Identity = 136/352 (38.64%), Postives = 192/352 (54.55%), Query Frame = 3
Query: 555 SRAQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREA--------------------------YTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
S AQ F + + K++ + HE G V + FP+D+ P A+ Q + LP VD FY K V VW+PEF+FP +Q + CP CG A DGW K PRRVF++ D+ Y++GFRY C KC K+N+ K + ++RK SFNAWD G L RL Y++ FP +L+++SG+ +V RLADDL++GKGFSA + + T +M Y SLVN R + +F A + FG F D + GA PS+ YLR VW ++ + V++ DGV T + Y HR+ Q DG +L+GDASFK+AK+IRL + +KP+
Sbjct: 42 SSAQERFFQDVKVKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPGLPEVDWFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYIMGFRYKCAKCAKFNQ----GKEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRT--SSGIFRSANHAKTP-ERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPV 380
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.780e-55 Identity = 111/161 (68.94%), Postives = 125/161 (77.64%), Query Frame = 3
Query: 900 RYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKT-LVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQ 1379
RYTC+ C K+NK+ DK RRK SFNAWDQGVLAR+DSYV+NAFPFVL+RKSG+A T +VARLADDLLNGKGFSATS F REAY N+YM +YHSYVSLVNRC++ I A G I FG F D EGFNGAWPSD YLRAVWH WFYET+VI+
Sbjct: 271 RYTCSGCLKHNKKK--GTGDKDRRKGSFNAWDQGVLARMDSYVSNAFPFVLTRKSGIATTAVVARLADDLLNGKGFSATSKFKREAYMNSYMMQYHSYVSLVNRCQRSIGGHFRAAAEEGTPDIPIFGGFGDREGFNGAWPSDQYLRAVWHKWFYETVVIE 429
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5L553_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L553_9PHAE) HSP 1 Score: 186 bits (473), Expect = 7.090e-51 Identity = 103/222 (46.40%), Postives = 142/222 (63.96%), Query Frame = 3
Query: 867 LDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAF-PFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
+++D+GY+IGFRY C +C +YN + + ++R SFNAWD G L RL YV+ F PF+L+ +SG+ LV RLADDL +GKGFSA + + R+A+T +M YVSL N R+ S+FG A + FG F D E + GA PSD YLR VW T+F E V++ +GV+ T ++YL RV Q DG +LAGDASFK+AK+IRL + T+P+
Sbjct: 1 MEEDVGYIIGFRYKCERCVEYNG----TVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHRSGIDIRLVDRLADDLAHGKGFSAAAKYIRQAHTTKFMVYQLKYVSL-NDARRSSRVSLFGAAP----VPEKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVEGVKWTWEDYLPRVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPV 213
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.350e-50 Identity = 122/328 (37.20%), Postives = 169/328 (51.52%), Query Frame = 3
Query: 555 SRAQLAFVAEARAKVNAGMVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVPEFMFPGVQIECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPI 1529
S AQ F E + K++ + E G V + FP+D+ P A+ Q P+ CG A DGW K PRRVF + D+ Y++ FRY C KC ++NK K + ++ K SFNAWD G L RL Y++ FPF+L+++SG+ +V RLADDL++GK FSA + R+A+T +M Y SLVN R + +F A L T FG F D + GA PS+ YLR VW +F + V++ D V T + Y HR+ Q DG IL GDASFK+AK+IRL + T+P+
Sbjct: 39 SSAQERFFQEVKDKIDRSITLEEGGVKGR---FPFDNPLVRPKCATFQ--------------------------------PSPGCGGKGAP-DGWNPKGPRRVFTEHDVAYVMEFRYKCAKCAEFNK----GKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPV 320
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KNK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK9_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.700e-49 Identity = 100/228 (43.86%), Postives = 141/228 (61.84%), Query Frame = 3
Query: 711 LPRVDPFYLKKVFVWVPEFMFPGVQ-IECPNTECGHHPASSDGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIATFGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGV 1391
LP++D FY K V VW+PEF+FP +Q + CP CG A DGW K PRRVF++ D+ Y++GFRY C KC ++N+ K + ++RK SFNAWD G L RL Y++ F F+L+++SG+ +V RLADDL++GKGFSA + R+A+T +M Y SLVN R + +F A + + FG F D + GA PS+ YLR VW +F + V++ D V
Sbjct: 17 LPKLDRFYQKAVLVWIPEFLFPELQAVPCPG--CGGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNE----GKQEAEKRKTSFNAWDAGCLRRLPEYMSKEFHFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSANLAK-IPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDSV 234
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE) HSP 1 Score: 181 bits (459), Expect = 3.720e-48 Identity = 103/239 (43.10%), Postives = 141/239 (59.00%), Query Frame = 3
Query: 831 DGWIAKQPRRVFLDDDIGYLIGFRYTCNKCEKYNKENHYSKNDKKRRKASFNAWDQGVLARLDSYVTNAFPFVLSRKSGVAKTLVARLADDLLNGKGFSATSNFTREAYTNTYMTKYHSYVSLVNRCRKHIEASVFGDATGGEALIAT---FGDFADGEGFNGAWPSDAYLRAVWHTWFYETIVIQADGVRMTRDNYLHRVAQLVDGMILAGDASFKYAKVIRLTSPGESTTTKPIKAS 1538
DGW K PRRVF+D D+ Y++GFRY C K ++NK K + + RK NAWD G L RL Y++ FPF+L+++SG+ +V RLADDL++GKGFSA + R+A+T +M Y SLVN R + +F A L T FG F D + GA PS+ YLR V +F + V++ D V T + Y HR+ Q DG IL GD+SFK+AK+IRL + T+P+ S
Sbjct: 8 DGWNPKGPRRVFMDHDVAYVMGFRYKCAKGAEFNK----GKQEAETRKTRVNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRT--SSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRHVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGS 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig89.16400.1 >prot_C-linearis_contig89.16400.1 ID=prot_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=314bp MVHERGKVVDKGSGFPYDDGWAVPPLASRQKTSALPRVDPFYLKKVFVWVback to top mRNA from alignment at C-linearis_contig89:226404..229648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig89.16400.1 ID=mRNA_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3245bp|location=Sequence derived from alignment at C-linearis_contig89:226404..229648+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig89:226404..229648+ >mRNA_C-linearis_contig89.16400.1 ID=mRNA_C-linearis_contig89.16400.1|Name=mRNA_C-linearis_contig89.16400.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at C-linearis_contig89:226404..229648+ (Chordaria linearis ClinC8C monoicous)back to top |