mRNA_C-linearis_contig89.16394.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16394.1
Unique NamemRNA_C-linearis_contig89.16394.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 1.070e-223
Identity = 317/321 (98.75%), Postives = 318/321 (99.07%), Query Frame = 2 
Query:  611 AADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAE 1573
            AADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHV+L VIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNG ALPRKRDMAGMIGLAWG SFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAE
Sbjct:  175 AADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAE 495
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 8.960e-170
Identity = 249/320 (77.81%), Postives = 278/320 (86.88%), Query Frame = 2 
Query:  644 GGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQA 1603
            GGT+QG QGQ+V AERGQPVV QMRSTSRENCTI+TTINAAGAVLAPTIIFKGQRFNGDW+ D +GPPGA Y CTESSFMCG+VFIKYI +FH+QL  RNLLDGKPHVLVLDGHASHVSL V++LA SLNIHLVQLPSHMSHITQPLDVAGFGCFKKEL K IQAFPA +G ALPRKRDMA +IG AW  SFTP+INKASFAGAGLWPVD+ERALSRLL+PKRK  ETDRPPL+DVPIAV+N+RLEEL+G+R VR L  +GHT+TGLRVSTV LG++LP  +KR K PP RANLG PEG LL+   W+AE + K  E +A
Sbjct:   98 GGTIQGAQGQQVYAERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLP--SKRSKKPPTRANLGIPEGGLLTCDGWLAEMKKKQNEAEA 415
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5KS64_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS64_9PHAE)

HSP 1 Score: 473 bits (1218), Expect = 4.670e-162
Identity = 273/340 (80.29%), Postives = 280/340 (82.35%), Query Frame = 2 
Query:  713 MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDR-NLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQAAEAXXXXXXXXXXXXXXXXXXA-APA------NKRQANGGRG 1708
            MRSTSRENCTI+TTINAAGAV AP IIFKGQRFNGDWVADLNGPP                    ++    Q   R  L   K HVLVLDGHASHVSL VIKLAISLNIHLVQLPSH SHITQPL+VA FGCFKKELAKVIQAFPARNG ALPRKRDMAGMIGLAWGPSFTPEIN+ASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALR+KGHTIT LRVSTVVLG FL NKNKRPKGPPKRANLG PEGNLLSA EWVAEQE KDRE+QAAEAXXXXXXXXXXX       A AP       NKRQANGGRG
Sbjct:    1 MRSTSRENCTIITTINAAGAVSAPIIIFKGQRFNGDWVADLNGPP--------------------VRQELPQAARRPQLARRKTHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSH-SHITQPLNVARFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINQASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRSKGHTITELRVSTVVLGKFLSNKNKRPKGPPKRANLGHPEGNLLSASEWVAEQEKKDREIQAAEAXXXXXXXXXXXAWEARRVAKAPXXXXXXXNKRQANGGRG 319
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5JKQ8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ8_9PHAE)

HSP 1 Score: 470 bits (1210), Expect = 3.090e-159
Identity = 238/311 (76.53%), Postives = 265/311 (85.21%), Query Frame = 2 
Query:  665 QGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREV 1597
            QGQRV AERGQPVV QMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFN DW+ D +GPPGA Y CTESSFMCG+VFIKYI +FH+QL  RNLLDGK HVL+LDGHASHVSL +++LA SLNIHLVQLPSHMSHITQPLDVAGFGCFK EL K IQAF A +G ALPRKRDMA +IG AW  SFTP+INKASFAGAGLWPVD+ERALSRLL+PKRK  ETDRPPL+DVPIAV+N+RLEEL+G+R VR L  +GHT+TGLRVSTV LG++LP  +KR K PP RANLG   G LL+   W+AE + K  EV
Sbjct:   61 QGQRVYAERGQPVVPQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNEDWIVDQDGPPGATYTCTESSFMCGDVFIKYIIDFHEQLRKRNLLDGKFHVLMLDGHASHVSLEIVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKNELTKAIQAFLATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLP--SKRSKKPPTRANLGILAGGLLTCDGWLAEMKKKQNEV 369
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE)

HSP 1 Score: 464 bits (1193), Expect = 7.750e-158
Identity = 231/297 (77.78%), Postives = 256/297 (86.20%), Query Frame = 2 
Query:  713 MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQA 1603
            MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDW+ D +GPPGA Y CTESSFMCG+VFIKYI +FH+QL  RNLLDGKPHVLVLDGHASHVSL V++LA SLNIHLVQLPSHMSHITQPLDVAGFGCFKKEL K IQAFPA +G ALPRKRDMA +IG AW  SFTP+INKASFAGAGLWPVD+ERALSRLL+PKRK  ETDRPPL+DVPIAV+N+RLEEL+G+R VR L  +GHT+TGLRVSTV LG++LP  +KR K PP RANLG PEG L     W+AE + K  E +A
Sbjct:    1 MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLP--SKRSKKPPTRANLGIPEGGLPICDGWLAEMKKKQNEAEA 295
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5JS97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS97_9PHAE)

HSP 1 Score: 468 bits (1203), Expect = 5.520e-155
Identity = 241/331 (72.81%), Postives = 269/331 (81.27%), Query Frame = 2 
Query:  611 AADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQA 1603
            AADH+WNTDESG     T G       G P  A   +   ENCTIVTTINAAGAVLAPTIIFKGQRFN DW+ D +GPPGA Y CTESSFMCG+VFIKYI +FH+QL  RNLLDGKPHVLVLDGHASHVSL V++LA SLNIHLVQLPSHMSHITQPLDVAGFGCFKKEL K IQAFPA +G ALPRKRDMA +IG AW  SFTP+INKASFAGAGLWPVD+ERALSRLL+PKRK  ETDRPPL+DVPIAV+N+RLEEL+G+R VR L  +GHT+TGLRVSTV LG++LP  +KR K PP RANLG PEG LL+   W+AE + K  E +A
Sbjct:  175 AADHIWNTDESG-----TAGLCGTGAAGGPADAFHFA---ENCTIVTTINAAGAVLAPTIIFKGQRFNEDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLP--SKRSKKPPTRANLGIPEGGLLTCDGWLAEMKKKQNEAEA 495
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5JZP3_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP3_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 1.410e-150
Identity = 221/233 (94.85%), Postives = 223/233 (95.71%), Query Frame = 2 
Query:  881 MCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQE 1579
            MCGEVFIKYIKNFHKQLGDRNLL GKPHVLVLDGH SHVSL VIKL ISLNIH VQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNG ALPRKRDMAGMIGLAWGPSFTPEIN+AS AGAGLWPVDR+RALSRLLRPKRKVTETDRP LEDVPIAVTNERLEELIGDRGVRAL AKGHTITGLRVSTVVLGNFLPNKNKRPKGPPK ANLGRPEGNLLSAPEWVAEQE
Sbjct:    1 MCGEVFIKYIKNFHKQLGDRNLLGGKPHVLVLDGHTSHVSLNVIKLPISLNIHRVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINQASVAGAGLWPVDRKRALSRLLRPKRKVTETDRPSLEDVPIAVTNERLEELIGDRGVRALSAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKWANLGRPEGNLLSAPEWVAEQE 233
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5JE34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE34_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 2.090e-144
Identity = 225/331 (67.98%), Postives = 251/331 (75.83%), Query Frame = 2 
Query:  611 AADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQA 1603
            AADH+ NTDESGGT+QG QGQRV A+RGQPVV QMRSTSRENCTIVTT+NAAGAVLAPTIIFKGQ FNGDW+ D +GPPGA Y CTES FMCG+VFIK                                        SLNIHLVQLPSHMSHITQPLDVAGFGCFKKEL K IQAFPA +G ALPRKRDMA +IG AW  SFTP+INKASFAGAGLWPVD+ERALSRLL+PKRK  ETDRPPL+DVPIAV+N+RLEEL+G+R VR L  +GHT+TGLRVSTV LG++LP  +KR K PP RANLG PEG LL+   W+AE + K  E +A
Sbjct:   26 AADHICNTDESGGTIQGAQGQRVYAKRGQPVVPQMRSTSRENCTIVTTVNAAGAVLAPTIIFKGQCFNGDWIVDQDGPPGATYTCTESPFMCGDVFIK----------------------------------------SLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLP--SKRSKKPPTRANLGIPEGGLLTCDGWLAEMKKKQNEAEA 314
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5KMM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM7_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 7.310e-134
Identity = 200/236 (84.75%), Postives = 208/236 (88.14%), Query Frame = 2 
Query:  713 MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRA 1420
            MRSTSRENCTI+TTINAAGAVLAPTI F GQRFNGDWVADLNGPP A+Y+CTESSFM GEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGH                   VQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNG ALPRKRDMAG+IGLAW P FTPEIN+ASFAGAGLWPVDRE AL +LLRPKRKVTET+RPPLEDVPIA+TNERLEELIGDRGVRALRA
Sbjct:    1 MRSTSRENCTIITTINAAGAVLAPTITFNGQRFNGDWVADLNGPPDAFYNCTESSFMFGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHXXXX---------------VQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGRALPRKRDMAGLIGLAWAPRFTPEINQASFAGAGLWPVDREWALRQLLRPKRKVTETNRPPLEDVPIALTNERLEELIGDRGVRALRA 221
[Close]
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Match: A0A6H5KP55_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP55_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 5.360e-132
Identity = 193/202 (95.54%), Postives = 196/202 (97.03%), Query Frame = 2 
Query:  776 LAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAALPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKRKVTETDRPPLEDVPIAVTNERLE 1381
            LAPTIIFKGQRFNGDWVADLN PPGAYYDCTESSFMCG+VFIKYI+NFHKQLG+RNLLDGKPHVLVLDGHASHVSL VIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNG ALPRKRDMAGMIGLAWGPSFTPEINK SFAGAGLWPVDRERALSRLLRPKRKVTE DRP LEDVPIAVTNERLE
Sbjct:   81 LAPTIIFKGQRFNGDWVADLNDPPGAYYDCTESSFMCGDVFIKYIQNFHKQLGERNLLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINKVSFAGAGLWPVDRERALSRLLRPKRKVTEIDRPRLEDVPIAVTNERLE 282
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYX7_9PHAE1.070e-22398.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH00_9PHAE8.960e-17077.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS64_9PHAE4.670e-16280.29DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JKQ8_9PHAE3.090e-15976.53DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J9Z8_9PHAE7.750e-15877.78DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JS97_9PHAE5.520e-15572.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP3_9PHAE1.410e-15094.85DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JE34_9PHAE2.090e-14467.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMM7_9PHAE7.310e-13484.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP55_9PHAE5.360e-13295.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:82528..84961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue4e-47
Seed eggNOG ortholog2880.D8LN28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1708
Cds size1146
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16394.1prot_C-linearis_contig89.16394.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 83090..84961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.2464483-UTR-C-linearis_contig89:82527..830891622930690.2464483-UTR-C-linearis_contig89:82527..83089Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 82528..83089 +
1690881198.5928774-UTR-C-linearis_contig89:82527..830891690881198.5928774-UTR-C-linearis_contig89:82527..83089Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 82528..83089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.277594-CDS-C-linearis_contig89:83089..831711622930690.277594-CDS-C-linearis_contig89:83089..83171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 83090..83171 +
1690881198.609388-CDS-C-linearis_contig89:83089..831711690881198.609388-CDS-C-linearis_contig89:83089..83171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 83090..83171 +
1622930690.2982357-CDS-C-linearis_contig89:83897..849611622930690.2982357-CDS-C-linearis_contig89:83897..84961Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 83898..84961 +
1690881198.620024-CDS-C-linearis_contig89:83897..849611690881198.620024-CDS-C-linearis_contig89:83897..84961Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 83898..84961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16394.1

>prot_C-linearis_contig89.16394.1 ID=prot_C-linearis_contig89.16394.1|Name=mRNA_C-linearis_contig89.16394.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=382bp
MNVCTSSTTSGASSSTAADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQ
MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYD
CTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVSLGVI
KLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGAA
LPRKRDMAGMIGLAWGPSFTPEINKASFAGAGLWPVDRERALSRLLRPKR
KVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVV
LGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAEQELKDREVQAAEA
AKAAAGAARAAKRVAKAAAAPANKRQANGGRG
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mRNA from alignment at C-linearis_contig89:82528..84961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16394.1 ID=mRNA_C-linearis_contig89.16394.1|Name=mRNA_C-linearis_contig89.16394.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2434bp|location=Sequence derived from alignment at C-linearis_contig89:82528..84961+ (Chordaria linearis ClinC8C monoicous)
GAATTTGATCAGCTTTCCGTTAGCTCTCGTTTGAGCACTTCAGCGTGCCG
ACCGGGGCACGCAGCCCCGAGCTACAGCAACGCGCCCCCAGCACTCTCGA
TGCGGCGCATCTTCGCCCTCGTGGGCCTCCTGCTGCTAAGCATGGGTCGG
AATAGAGTGTGCGCGGAGGCCGCTACGAAGGCCTGTGAAGCAGTCCGCAG
CGGTAGCATGTTACGCAACGCTGCTGCTGCTGCCTACGGCATCAGCAAGA
CGTCGCTCTCGCGGCGGTTGAGCGGTGAGTGTGCCATAGACGCTCGGGTG
GGGCCCGGGACTGTCATGACCGCAGCCGAGGAAGATGCGCTTGAAGATGT
TCTGCTGTACGCTGGTCGGAACTATATTCCGCTCACCACCGCAGACCTCA
CGGAGCGTGTGAGACAGCTCTGCAACGACGGTCGACCGATCCCGTGGACC
CCTGACAAGGGCCCGGGGAGGAGCTGGCTTGAGGGCTTCCTCGGACGGCA
CGAGCGCATCAGCCTTCGACTCGCCCGCATCTACGAGTCCAACAGGGTGA
CCTCCGCGGAAGATGAACGTCTGCACAAGTTCTACGACTTCTGGGGCCAG
TTCCTCGACGGCGGCCGACCATGTCTGGAACACGGACGAGTCAGGTGAGC
AACACAGGGAAGTGGTGTGGTGTCGGCAGTAGCTGCTGTGTGACGGATTG
TGAGCTTGTTTCTACATTTGAGCTGCTGTGTGGTCTACGACGTGAAAAAT
AGGCAGAGTTCTGCTGCTGCTGTAAAAAAAAATCGAGTTTTCCCGCAGCG
TGGTCTCGCCGAGGACCACTGCTACATGAACGCGCAATTACTGTCGTGTG
CGCTGGCTACAGTTTGGGATCCTTGTTCATGTCGGCAGTATGCACACACG
TTGCTTCAAGAGCAGTTTCGCATGCTGATACACATGATTTTTGCGCAGCA
CACACACGGAATTGATGTGTGGGAAGGAGAAGCTTGTCGCGGTGCCGCTG
CTGCTGCTGCTACTGCTGTTGCTGCTGTGCGTATCTTTCTCACCTTCGAC
TAGTCTAGTCTATGTGGTCTACAGCAGTGGCCCCCTGTGTGTACCTTTTT
TTTTCTTCGAGGCGCAAGAGAAGACTGTAGTCTAGACTAGTCTCGTGTGG
ATGGCCCCAGCTCTGCAGCTGCGCCGGTACATTTTGCATGTGAGGACATG
CCACCGTGTTCGCCGTTCTCTCCCCCCCCCCCCCCACCTCCCCGCCCGCT
TTTTTTTTTTTAGGCTAGACGTTGGTGGTGCGTGAAGGCGCTATTGTCCC
CTGTACTTACTCTCCTACTGCTTCTCCCCCCCCCCAACTCACGCTTTGCC
GCCGCAATAAATCATTGCAGGTGGCACCGTTCAAGGTACGCAGGGACAGC
GGGTCATGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGCGCTCCACC
TCGCGAGAGAACTGCACGATCGTCACCACCATCAACGCTGCCGGCGCCGT
GTTGGCTCCTACCATCATCTTCAAAGGGCAACGCTTCAACGGAGATTGGG
TCGCGGATCTCAACGGCCCGCCGGGTGCGTACTACGACTGCACGGAGTCA
TCCTTCATGTGTGGTGAGGTGTTCATCAAGTACATCAAGAACTTCCACAA
GCAGCTCGGCGACCGCAACTTGCTCGACGGAAAACCCCACGTGCTCGTGC
TCGATGGGCACGCGTCGCACGTTAGCCTGGGCGTCATTAAGTTGGCCATC
TCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACATGTCTCACATCAC
CCAGCCCTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGAGCTGGCGA
AGGTGATCCAGGCCTTCCCGGCGAGGAACGGAGCGGCACTACCGCGGAAG
AGGGACATGGCCGGCATGATCGGGCTAGCGTGGGGCCCGAGCTTTACGCC
GGAAATCAACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCCGGTGGACA
GGGAGCGGGCACTCAGCCGGCTGCTGCGCCCGAAGAGGAAGGTGACGGAA
ACCGACCGCCCTCCCCTGGAGGACGTCCCCATCGCCGTGACCAACGAACG
TCTGGAGGAGTTGATCGGCGACCGCGGCGTTCGCGCGCTCAGAGCAAAAG
GCCACACCATCACGGGACTTCGCGTGAGCACCGTGGTCCTCGGCAACTTC
CTGCCCAACAAAAACAAACGTCCCAAGGGCCCGCCCAAGCGGGCGAACTT
GGGCCGTCCAGAGGGAAACCTGCTCTCTGCGCCGGAGTGGGTGGCGGAGC
AGGAGTTGAAAGACCGCGAGGTCCAGGCTGCCGAGGCCGCTAAGGCGGCC
GCGGGAGCGGCGCGGGCAGCCAAGAGGGTGGCGAAGGCGGCGGCGGCGCC
GGCGAACAAACGTCAAGCGAACGGCGGACGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig89:82528..84961+

>mRNA_C-linearis_contig89.16394.1 ID=mRNA_C-linearis_contig89.16394.1|Name=mRNA_C-linearis_contig89.16394.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at C-linearis_contig89:82528..84961+ (Chordaria linearis ClinC8C monoicous)
ATGAACGTCTGCACAAGTTCTACGACTTCTGGGGCCAGTTCCTCGACGGC
GGCCGACCATGTCTGGAACACGGACGAGTCAGATGAACGTCTGCACAAGT
TCTACGACTTCTGGGGCCAGTTCCTCGACGGCGGCCGACCATGTCTGGAA
CACGGACGAGTCAGGTGGCACCGTTCAAGGTACGCAGGGACAGCGGGTCA
TGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGCGCTCCACCTCGCGA
GAGAACTGCACGATCGTCACCACCATCAACGCTGCCGGCGCCGTGTTGGC
TCCTACCATCATCTTCAAAGGGCAACGCTTCAACGGAGATTGGGTCGCGG
ATCTCAACGGCCCGCCGGGTGCGTACTACGACTGCACGGAGTCATCCTTC
ATGTGTGGTGAGGTGTTCATCAAGTACATCAAGAACTTCCACAAGCAGCT
CGGCGACCGCAACTTGCTCGACGGAAAACCCCACGTGCTCGTGCTCGATG
GGCACGCGTCGCACGTTAGCCTGGGCGTCATTAAGTTGGCCATCTCCCTC
AACATCCACCTCGTCCAGCTGCCCTCCCACATGTCTCACATCACCCAGCC
CTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGAGCTGGCGAAGGTGA
TCCAGGCCTTCCCGGCGAGGAACGGAGCGGCACTACCGCGGAAGAGGGAC
ATGGCCGGCATGATCGGGCTAGCGTGGGGCCCGAGCTTTACGCCGGAAAT
CAACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCCGGTGGACAGGGAGC
GGGCACTCAGCCGGCTGCTGCGCCCGAAGAGGAAGGTGACGGAAACCGAC
CGCCCTCCCCTGGAGGACGTCCCCATCGCCGTGACCAACGAACGTCTGGA
GGAGTTGATCGGCGACCGCGGCGTTCGCGCGCTCAGAGCAAAAGGCCACA
CCATCACGGGACTTCGCGTGAGCACCGTGGTCCTCGGCAACTTCCTGCCC
AACAAAAACAAACGTCCCAAGGGCCCGCCCAAGCGGGCGAACTTGGGCCG
TCCAGAGGGAAACCTGCTCTCTGCGCCGGAGTGGGTGGCGGAGCAGGAGT
TGAAAGACCGCGAGGTCCAGGCTGCCGAGGCCGCTAAGGCGGCCGCGGGA
GCGGCGCGGGCAGCCAAGAGGGTGGCGAAGGCGGCGGCGGCGCCGGCGAA
CAAACGTCAAGCGAACGGCGGACGGGGGGTGGCACCGTTCAAGGTACGCA
GGGACAGCGGGTCATGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGC
GCTCCACCTCGCGAGAGAACTGCACGATCGTCACCACCATCAACGCTGCC
GGCGCCGTGTTGGCTCCTACCATCATCTTCAAAGGGCAACGCTTCAACGG
AGATTGGGTCGCGGATCTCAACGGCCCGCCGGGTGCGTACTACGACTGCA
CGGAGTCATCCTTCATGTGTGGTGAGGTGTTCATCAAGTACATCAAGAAC
TTCCACAAGCAGCTCGGCGACCGCAACTTGCTCGACGGAAAACCCCACGT
GCTCGTGCTCGATGGGCACGCGTCGCACGTTAGCCTGGGCGTCATTAAGT
TGGCCATCTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACATGTCT
CACATCACCCAGCCCTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGA
GCTGGCGAAGGTGATCCAGGCCTTCCCGGCGAGGAACGGAGCGGCACTAC
CGCGGAAGAGGGACATGGCCGGCATGATCGGGCTAGCGTGGGGCCCGAGC
TTTACGCCGGAAATCAACAAAGCTTCCTTCGCCGGGGCGGGCCTGTGGCC
GGTGGACAGGGAGCGGGCACTCAGCCGGCTGCTGCGCCCGAAGAGGAAGG
TGACGGAAACCGACCGCCCTCCCCTGGAGGACGTCCCCATCGCCGTGACC
AACGAACGTCTGGAGGAGTTGATCGGCGACCGCGGCGTTCGCGCGCTCAG
AGCAAAAGGCCACACCATCACGGGACTTCGCGTGAGCACCGTGGTCCTCG
GCAACTTCCTGCCCAACAAAAACAAACGTCCCAAGGGCCCGCCCAAGCGG
GCGAACTTGGGCCGTCCAGAGGGAAACCTGCTCTCTGCGCCGGAGTGGGT
GGCGGAGCAGGAGTTGAAAGACCGCGAGGTCCAGGCTGCCGAGGCCGCTA
AGGCGGCCGCGGGAGCGGCGCGGGCAGCCAAGAGGGTGGCGAAGGCGGCG
GCGGCGCCGGCGAACAAACGTCAAGCGAACGGCGGACGGGGG
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