mRNA_C-linearis_contig89.16393.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16393.1
Unique NamemRNA_C-linearis_contig89.16393.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:63414..64386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.4486873-CDS-C-linearis_contig89:63413..636591622930689.4486873-CDS-C-linearis_contig89:63413..63659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 63414..63659 -
1690881198.2987888-CDS-C-linearis_contig89:63413..636591690881198.2987888-CDS-C-linearis_contig89:63413..63659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 63414..63659 -
1622930689.469164-CDS-C-linearis_contig89:64329..643861622930689.469164-CDS-C-linearis_contig89:64329..64386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 64330..64386 -
1690881198.3080146-CDS-C-linearis_contig89:64329..643861690881198.3080146-CDS-C-linearis_contig89:64329..64386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 64330..64386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16393.1prot_C-linearis_contig89.16393.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 63414..64386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16393.1

>prot_C-linearis_contig89.16393.1 ID=prot_C-linearis_contig89.16393.1|Name=mRNA_C-linearis_contig89.16393.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
REGWKTLRREVRQLEVCREDGCCGGTKIRTVVQLREAVLTHEGRIPRQMG
GMSHQTEALLFNQQQQRSSSGEPEHNRSRRHRTHQLFPRRKVCVVEPLWS
*
back to top

mRNA from alignment at C-linearis_contig89:63414..64386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16393.1 ID=mRNA_C-linearis_contig89.16393.1|Name=mRNA_C-linearis_contig89.16393.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=973bp|location=Sequence derived from alignment at C-linearis_contig89:63414..64386- (Chordaria linearis ClinC8C monoicous)
AGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTGAAGTTTG
TAGAGAGGTAAGTCCGGCTACTCAATACAAAACGAAAGAAAGACTCCGGA
GGTCATTTATTTAGCGCACATTGGGCAAGGCTGTCACAGAGTGCCCTGCT
TGCCTCCGCTGCAGAGGACGCTCACACATGGGGTCATTTCGGCGAGAATG
ATTCAACACAGCAGTGTATATTGGTTCAAGTTTCACCGCATAGTAGGCAA
CAGCCTGGCTTCATTGCACAATATCTCAAGCAACAGCCGAGGATGTAAAT
CCTGGGCAATTCGGCCGAGAAAAGGTTGTGCATCTTTCGCCGGCTGTGCA
TTTTTCGCCCACTGCTGACCAGAAACCCTAGGATACAACTCTGCTCTCTG
TCATTACAGATATGGTTGTGTTGTAACTGCGCGATGATTTTGCCAAGAGG
AAACATGGCAAAACGAATAGAGTCGCCGTGATAAAGCGTCTCCTCGTCTG
ACAATGACAGCAGGCTTGCAACTTCATCAAGCACCTCCCGTCGTTCTTCC
TCGCCTCTACCGATGCACATTATTGTGTCTCTTAATTAACCGCTTATGGA
AACAGATGAACTGAAGCTTTACTGGGCCGGATGCAACCATACGAGCGCTA
TGTGCAAGAATGGGTTGGTTTCTGTTGTGTTGATGGAGCTCACATTAGGT
GTTACCCTTTGCTTTCACGCCAAACAGGATGGGTGTTGCGGTGGCACCAA
AATCAGGACCGTGGTGCAGCTGCGTGAGGCTGTGTTGACTCATGAGGGTC
GAATACCTCGCCAAATGGGAGGCATGTCACATCAGACCGAAGCTCTACTC
TTTAATCAGCAGCAGCAGCGAAGCAGCAGCGGCGAGCCGGAGCACAACAG
GAGTCGTAGACACAGGACCCACCAGCTTTTTCCGAGGAGAAAGGTTTGTG
TAGTCGAGCCCTTGTGGTCATGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig89:63414..64386-

>mRNA_C-linearis_contig89.16393.1 ID=mRNA_C-linearis_contig89.16393.1|Name=mRNA_C-linearis_contig89.16393.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig89:63414..64386- (Chordaria linearis ClinC8C monoicous)
AGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTGAAGTTTG
TAGAGAGAGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTG
AAGTTTGTAGAGAGGATGGGTGTTGCGGTGGCACCAAAATCAGGACCGTG
GTGCAGCTGCGTGAGGCTGTGTTGACTCATGAGGGTCGAATACCTCGCCA
AATGGGAGGCATGTCACATCAGACCGAAGCTCTACTCTTTAATCAGCAGC
AGCAGCGAAGCAGCAGCGGCGAGCCGGAGCACAACAGGAGTCGTAGACAC
AGGACCCACCAGCTTTTTCCGAGGAGAAAGGTTTGTGTAGTCGAGCCCTT
GTGGTCATGAGATGGGTGTTGCGGTGGCACCAAAATCAGGACCGTGGTGC
AGCTGCGTGAGGCTGTGTTGACTCATGAGGGTCGAATACCTCGCCAAATG
GGAGGCATGTCACATCAGACCGAAGCTCTACTCTTTAATCAGCAGCAGCA
GCGAAGCAGCAGCGGCGAGCCGGAGCACAACAGGAGTCGTAGACACAGGA
CCCACCAGCTTTTTCCGAGGAGAAAGGTTTGTGTAGTCGAGCCCTTGTGG
TCATGA
back to top