mRNA_C-linearis_contig89.16390.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16390.1
Unique NamemRNA_C-linearis_contig89.16390.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:16417..17390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930688.9452844-CDS-C-linearis_contig89:16416..166621622930688.9452844-CDS-C-linearis_contig89:16416..16662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 16417..16662 -
1690881198.1860344-CDS-C-linearis_contig89:16416..166621690881198.1860344-CDS-C-linearis_contig89:16416..16662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 16417..16662 -
1622930688.9583628-CDS-C-linearis_contig89:17333..173901622930688.9583628-CDS-C-linearis_contig89:17333..17390Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 17334..17390 -
1690881198.196327-CDS-C-linearis_contig89:17333..173901690881198.196327-CDS-C-linearis_contig89:17333..17390Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 17334..17390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16390.1prot_C-linearis_contig89.16390.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 16417..17390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16390.1

>prot_C-linearis_contig89.16390.1 ID=prot_C-linearis_contig89.16390.1|Name=mRNA_C-linearis_contig89.16390.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
REGWKTLRREVRQLEVCREDGCCGGTKIRTVVQLREAVLTHEGRIPRQMG
GMSHQTEALLFNQQQQRSSSGEPEHNRSRRHRTHQLFPRRKVCVVEPLWS
*
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mRNA from alignment at C-linearis_contig89:16417..17390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16390.1 ID=mRNA_C-linearis_contig89.16390.1|Name=mRNA_C-linearis_contig89.16390.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=974bp|location=Sequence derived from alignment at C-linearis_contig89:16417..17390- (Chordaria linearis ClinC8C monoicous)
AGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTGAAGTTTG
TAGAGAGGTAAGTCCGGCTACTCAATACAAAACGAAAGAAAGACTCCGGA
GGTCATTTATTTAGCGCACATTCGGGCAAGGCTGTCACAGAGTGCCCTGC
TTGCCTCCGCTGCAGAGGACGCTCACACATGGAGTCATTTCGGCGAGAAT
GATTCAACACAGCAGTGTTAATTGGTCCAAGTTTCACCGCATAGTAGGCA
ACAGCCTGGCTTCATTGCACAATATCTCAAGCAACAGCCGAGGATGTAAA
TCCTGGGCAATTCGGCCGAGAAAAGGTTGTGCATCTTTCGCCGGCTGTGC
ATTTTTCGCCCACTGCTGACCAGAAACCCTAGGATACAACTCTGCTCTCT
GTCATTACAGATATGGTTGTGTTGTAACTGCGCGATGATTTTGCCAAGAG
GAAACATGGCAAAACGAATAGAGTCGCCGTGATAAACCGTCTCCTCGTCT
GACAATGACAGCAGGCTTGCAACTTCATCAAGCACCTCCCGTCGTTCTTC
CTCGCCTCTACCGATGCACATTATTGTGTCTCTTAATTAACCGCTTATGG
AAACAGATGAACTGAAGCTTTACTGGGCCGGATGCAACCATACGAGCGCT
ATGTGCAAGAATGGGTTGGTTTCTGTTGTGTTGATGGAGCTCACATTAGG
TGTTACCCTTTGCTTTCACGCCAAACAGGATGGGTGTTGCGGTGGCACCA
AAATCAGGACCGTGGTGCAGCTGCGTGAGGCTGTGTTGACTCATGAGGGT
CGAATACCTCGCCAAATGGGAGGCATGTCACATCAGACCGAAGCTCTACT
CTTTAATCAGCAGCAGCAGCGAAGCAGCAGCGGCGAGCCGGAGCACAACA
GGAGTCGTAGACACAGGACCCACCAGCTTTTTCCGAGGAGAAAGGTTTGT
GTAGTCGAGCCCTTGTGGTCATGA
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Coding sequence (CDS) from alignment at C-linearis_contig89:16417..17390-

>mRNA_C-linearis_contig89.16390.1 ID=mRNA_C-linearis_contig89.16390.1|Name=mRNA_C-linearis_contig89.16390.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig89:16417..17390- (Chordaria linearis ClinC8C monoicous)
AGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTGAAGTTTG
TAGAGAGAGAGAGGGATGGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTG
AAGTTTGTAGAGAGGATGGGTGTTGCGGTGGCACCAAAATCAGGACCGTG
GTGCAGCTGCGTGAGGCTGTGTTGACTCATGAGGGTCGAATACCTCGCCA
AATGGGAGGCATGTCACATCAGACCGAAGCTCTACTCTTTAATCAGCAGC
AGCAGCGAAGCAGCAGCGGCGAGCCGGAGCACAACAGGAGTCGTAGACAC
AGGACCCACCAGCTTTTTCCGAGGAGAAAGGTTTGTGTAGTCGAGCCCTT
GTGGTCATGAGATGGGTGTTGCGGTGGCACCAAAATCAGGACCGTGGTGC
AGCTGCGTGAGGCTGTGTTGACTCATGAGGGTCGAATACCTCGCCAAATG
GGAGGCATGTCACATCAGACCGAAGCTCTACTCTTTAATCAGCAGCAGCA
GCGAAGCAGCAGCGGCGAGCCGGAGCACAACAGGAGTCGTAGACACAGGA
CCCACCAGCTTTTTCCGAGGAGAAAGGTTTGTGTAGTCGAGCCCTTGTGG
TCATGA
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