mRNA_C-linearis_contig88.16341.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16341.1
Unique NamemRNA_C-linearis_contig88.16341.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:176366..176925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16341.1prot_C-linearis_contig88.16341.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 176579..176917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.3075612-UTR-C-linearis_contig88:176365..1765781622930676.3075612-UTR-C-linearis_contig88:176365..176578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 176366..176578 +
1690881190.9615037-UTR-C-linearis_contig88:176365..1765781690881190.9615037-UTR-C-linearis_contig88:176365..176578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 176366..176578 +
1622930676.3340793-UTR-C-linearis_contig88:176917..1769251622930676.3340793-UTR-C-linearis_contig88:176917..176925Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 176918..176925 +
1690881190.995563-UTR-C-linearis_contig88:176917..1769251690881190.995563-UTR-C-linearis_contig88:176917..176925Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 176918..176925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.3221643-CDS-C-linearis_contig88:176578..1769171622930676.3221643-CDS-C-linearis_contig88:176578..176917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 176579..176917 +
1690881190.9826367-CDS-C-linearis_contig88:176578..1769171690881190.9826367-CDS-C-linearis_contig88:176578..176917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 176579..176917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16341.1

>prot_C-linearis_contig88.16341.1 ID=prot_C-linearis_contig88.16341.1|Name=mRNA_C-linearis_contig88.16341.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MSHKSSIIGNKTVRLHDISKPRRRIPRMMIRLSQAHGRIFPLLSQEMPIL
PHLQNASALLGKPRTRYRMYTCIPFTRHPLTQGSPQPSNILSPLDPSLSQ
RMSSLYRRRSSS*
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mRNA from alignment at C-linearis_contig88:176366..176925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16341.1 ID=mRNA_C-linearis_contig88.16341.1|Name=mRNA_C-linearis_contig88.16341.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=560bp|location=Sequence derived from alignment at C-linearis_contig88:176366..176925+ (Chordaria linearis ClinC8C monoicous)
CAATCGGAGTACATAAAATGCCTGCCATCATGATGCAGCCCCGGACTCCG
TGCCTCTTGGCCCACCGGCGCAATGCAAAAAACATGAAAAATGCACAGCT
ATGATACATACGAGATATAATGTTCCACACACGTCGTGTGGCTGCGCGCG
CCGTCACTACCTTTGGGCCTAACCAAAACATACTCGTAGCAAAAGCTCTG
CAGGTGACTAAGTATGTCGCACAAGTCCTCTATAATAGGGAACAAGACAG
TGCGTCTACATGATATTTCCAAGCCCCGTAGGCGCATTCCTCGGATGATG
ATTCGCCTCTCACAAGCACATGGCAGAATTTTCCCTCTACTATCCCAAGA
AATGCCGATCTTACCACATCTGCAAAATGCGTCGGCGCTGCTGGGCAAAC
CACGTACCAGGTATAGAATGTATACATGTATACCCTTCACGCGCCACCCC
CTCACCCAAGGTTCACCACAACCCTCGAATATTCTTTCCCCCCTGGACCC
TTCGCTCTCTCAACGTATGTCTTCACTATACCGCCGCCGCTCCTCCTCCT
GAAAGGCATC
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Coding sequence (CDS) from alignment at C-linearis_contig88:176366..176925+

>mRNA_C-linearis_contig88.16341.1 ID=mRNA_C-linearis_contig88.16341.1|Name=mRNA_C-linearis_contig88.16341.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig88:176366..176925+ (Chordaria linearis ClinC8C monoicous)
ATGTCGCACAAGTCCTCTATAATAGGGAACAAGACAGTGCGTCTACATGA
TATTTCCAAGCCCCGTAGGCGCATTCCTCGGATGATGATTCGCCTCTCAC
AAGCACATGGCAGAATTTTCCCTCTACTATCCCAAGAAATGCCGATCTTA
CCACATCTGCAAAATGCGTCGGCGCTGCTGGGCAAACCACGTACCAGGTA
TAGAATGTATACATGTATACCCTTCACGCGCCACCCCCTCACCCAAGGTT
CACCACAACCCTCGAATATTCTTTCCCCCCTGGACCCTTCGCTCTCTCAA
CGTATGTCTTCACTATACCGCCGCCGCTCCTCCTCCTGAATGTCGCACAA
GTCCTCTATAATAGGGAACAAGACAGTGCGTCTACATGATATTTCCAAGC
CCCGTAGGCGCATTCCTCGGATGATGATTCGCCTCTCACAAGCACATGGC
AGAATTTTCCCTCTACTATCCCAAGAAATGCCGATCTTACCACATCTGCA
AAATGCGTCGGCGCTGCTGGGCAAACCACGTACCAGGTATAGAATGTATA
CATGTATACCCTTCACGCGCCACCCCCTCACCCAAGGTTCACCACAACCC
TCGAATATTCTTTCCCCCCTGGACCCTTCGCTCTCTCAACGTATGTCTTC
ACTATACCGCCGCCGCTCCTCCTCCTGA
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