mRNA_C-linearis_contig88.16331.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16331.1
Unique NamemRNA_C-linearis_contig88.16331.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.210e-135
Identity = 185/230 (80.43%), Postives = 205/230 (89.13%), Query Frame = 3 
Query:  111 AQQLAVERSVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHRECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEGEWLPPATEES 800
            A QL+V+RSVRV  HT GMEWAPSPSPSVWRKRVALEGPQE+GRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAP S+DGCVLWVKLRQHGGPSR+H+R+DT SM W+DT+ PGV+AK LYS  P HVESMRIEKW+AGAK  REC +MTEFLVLEGEA   DASETF +RSWLR+PAG  +SMTS  GC+VF+KEGEWLPP++  +
Sbjct:    2 ASQLSVDRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSH-PDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHDASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNT 230
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BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT)

HSP 1 Score: 224 bits (570), Expect = 2.700e-67
Identity = 115/228 (50.44%), Postives = 150/228 (65.79%), Query Frame = 3 
Query:  111 AQQLAVERSVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHRECPEM-TEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEGEWLPPAT 791
            + +L  +   RV   T  M W  SPSPSVWRKR+ L GP EAGRVT++VRY+  S+F  H HPDGEEILVLEG++ D +GD+PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H  +DT ++ WQ    PG   K LY+  P  +E MR+ + + GA+  R   +   E LVLEG   D+D   T+ + SWLR P G   S+ S  G  +++K+G  LPPA+
Sbjct:    2 SHELNADFHARVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYA-APDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDG--TYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPPAS 225
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM)

HSP 1 Score: 215 bits (547), Expect = 9.100e-64
Identity = 110/216 (50.93%), Postives = 143/216 (66.20%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEA----GAKFHRECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEG 770
            +VR    T+ MEW  SPS +VWRKRV L G  E+G+VTS+VRY   S F  H HP+GEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ  GP REH  +DT+   WQ T+  GV  K+LY R   + ++ R+E+WEA    G   H +     EF VL+GE  DD+    +   +WLR+PAGG  S  +  GC+++IK+G
Sbjct:   13 TVRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLY-RQAGYSDTTRLERWEAESTAGTISHEQG---AEFFVLDGEFEDDEG--VYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 1.100e-61
Identity = 108/224 (48.21%), Postives = 144/224 (64.29%), Query Frame = 3 
Query:  102 SMDAQQLAVERSVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHR-ECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEG 770
            S D+  +  +   RV   T  M W PSPS +V+RKRV L GP E+G+VTSVVRY   + F+ H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRH+P S+DGCVL+VKLRQ  G +REH  + T ++ W+     GV  + LY++     ++MR+E+W   A+    E P   E  VLEG  RD+D    F + +WLR+P G   S ++  GC ++IKEG
Sbjct:    4 SGDSAAINGDLGRRVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAG-FADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDGE--FARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
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BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A2N5Y5A5_9GAMM (Anti-sigma factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5A5_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 3.180e-60
Identity = 104/213 (48.83%), Postives = 140/213 (65.73%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHR-ECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEG 770
            S RVV  T+ M+W PSP+  V RKR+ L G  E+G+VTS+VRY+  + F  H HP GEEILVLEG + D +GD PAG+Y+LNPEGF+HAP S++GC+L+VKLRQ+ G  REH  +DT +  WQ +       K LY++ P + + MR+E W+  A   +   P+  E LVL+G   DD+ S  +    WLR+PAGG I  TS   CE++IKEG
Sbjct:   13 SRRVVVDTQSMDWTPSPAGQVLRKRLHLVGQAESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSREGCLLFVKLRQYPGADREHVAIDTTARPWQPSVRKNTSWKKLYAQEP-YTDFMRLESWDTPAAIGQINFPQGAEILVLKGSFADDEGS--YRTHCWLRIPAGGAIHPTSNEYCELYIKEG 222
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT)

HSP 1 Score: 204 bits (519), Expect = 1.650e-59
Identity = 110/211 (52.13%), Postives = 133/211 (63.03%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHRECPEM-TEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIK 764
            SVR VA T  MEWAPSPS SVWRKRV L GP E+G+VTSVVRY   S+F  H HP GEEILVLEG + D +GD PAGT++LNPEGFRHAP S+ GCVL+VKLRQ  G  R H  +DT  + W+ +  P V  K LY +     + MR+E+WE  A       E   E  VL GE  D+  +  +    WLR+PAG +    S  GC V+IK
Sbjct:   10 SVRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTG-FSDVMRLERWEPQADLGVVSYEQGAELFVLGGEFVDEAGA--YSAGCWLRLPAGSEHHPRSAGGCTVYIK 217
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BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27)

HSP 1 Score: 203 bits (517), Expect = 2.720e-59
Identity = 105/216 (48.61%), Postives = 133/216 (61.57%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHR-ECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEGEWL 779
            S RV      M+W PSPS +VWRKR  L G  E+G+VTS+VRYD  ++F  H HP GEEILVLEG + D  GD PAG+Y+LNPEGF HAP S +GC+L VKLRQ  G  R H  +DT  + WQ +E  GV  K LY+    + E MR+E W   +     E PE  EF V+ GE  D+     +   SWLR+PAG + +  S +GCE++IK G  L
Sbjct:    9 SKRVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADND-YPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQGR--YPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM)

HSP 1 Score: 202 bits (513), Expect = 8.050e-59
Identity = 105/216 (48.61%), Postives = 144/216 (66.67%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAK-FHRECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEGEWL 779
            S RVV  T+ + W PSPS +VWRKR+ L GP EAG+VTS+VRY  +S+F  H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC L+VKLRQ  G  R H  +DT+++ WQ  E  G   K LY++V  + +SMR+E+W +G++    +  +  E  VL G   D+  S  ++  +WLR+P   +    +  GCE++IKEG ++
Sbjct:   10 SARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTRE--GRAIKLLYAQVG-YADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERGS--YDAHTWLRLPPQARHCPRTSGGCELYIKEGGFV 220
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT)

HSP 1 Score: 201 bits (512), Expect = 1.330e-58
Identity = 108/213 (50.70%), Postives = 135/213 (63.38%), Query Frame = 3 
Query:  135 SVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKFHRECPEM-TEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEG 770
            S  VV HT  MEW PSPS SV RKRV L G  EAG+VTSVVRY  NS F  H HP+GEEILVL+G + D +GD PAG+Y+LNPEGFRHAP SK GC+++VKLRQ+GG  R H  + T  + W+     G+  K LYS      + MR+E+W  GA       E   E LVL G   D+  S  +++ SWLR+PAG   +  S  GCE+++K G
Sbjct:   12 SQSVVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAG-FPDEMRLERWAPGATPGTVSYEGGAEILVLRGRLEDEQGS--YDKLSWLRLPAGATHTPVSPNGCELYLKTG 221
[Close]
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Match: A0A523JY10_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JY10_9GAMM)

HSP 1 Score: 201 bits (511), Expect = 1.550e-58
Identity = 106/219 (48.40%), Postives = 131/219 (59.82%), Query Frame = 3 
Query:  117 QLAVERSVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVPRHVESMRIEKWEAGAKF-HRECPEMTEFLVLEGEARDDDASETFEQRSWLRVPAGGKISMTSVVGCEVFIKEG 770
            +L  + S  VV  T  MEW  SP   VWRKR+ L G  E+GRVTS+VRYDA S+F  H HP+GEEILVLEG   D +G +PAGTY+LNPEGFRHAP S  GCVL+VKLRQ+ G  R H  VD+ S  WQ +E PG     LY     H ESMR+ +   G +    + P   E  V+ G   D     T+EQ +WLR P G +    S  GC +++K G
Sbjct:    3 ELNADFSRPVVVRTAAMEWRSSPGAGVWRKRLELRGAAESGRVTSIVRYDAGSRFPPHEHPEGEEILVLEGILADEHGSYPAGTYLLNPEGFRHAPRSDQGCVLFVKLRQYPGSDRSHCEVDSNSATWQQSEPPGREVLPLYDE-HGHRESMRLVRLAPGTRVPEHDHPGGEEIYVMAGSLADGQG--TYEQGTWLRFPDGSRHQPFSDEGCTLYVKTG 218
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM74_ECTSI1.210e-13580.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y5TZ85_9PROT2.700e-6750.44ChrR Cupin-like domain protein n=1 Tax=Oceanibacte... [more]
A0A7Y2ICR3_9GAMM9.100e-6450.93Anti-sigma factor n=1 Tax=Woeseiaceae bacterium Ta... [more]
A0A7C2JUM9_9GAMM1.100e-6148.21Anti-sigma factor n=1 Tax=Gammaproteobacteria bact... [more]
A0A2N5Y5A5_9GAMM3.180e-6048.83Anti-sigma factor n=1 Tax=Kineobactrum sediminis T... [more]
A0A536YCZ3_9PROT1.650e-5952.13Anti-sigma factor n=3 Tax=Betaproteobacteria bacte... [more]
UPI000688EB272.720e-5948.61cupin domain-containing protein n=1 Tax=Marinobact... [more]
A0A534ASB5_9GAMM8.050e-5948.61Anti-sigma factor n=2 Tax=Gammaproteobacteria bact... [more]
A0A523JHQ7_9DELT1.330e-5850.70Anti-sigma factor n=1 Tax=Deltaproteobacteria bact... [more]
A0A523JY10_9GAMM1.550e-5848.40Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:103787..108341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.0
Seed ortholog evalue3.9e-109
Seed eggNOG ortholog2880.D7FM74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs2SA9Z@2759,COG3806@1
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-16_004810.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1394
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16331.1prot_C-linearis_contig88.16331.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 104378..108237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.835265-UTR-C-linearis_contig88:103786..1043771622930676.835265-UTR-C-linearis_contig88:103786..104377Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 103787..104377 -
1690881191.196842-UTR-C-linearis_contig88:103786..1043771690881191.196842-UTR-C-linearis_contig88:103786..104377Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 103787..104377 -
1622930677.0243483-UTR-C-linearis_contig88:108237..1083411622930677.0243483-UTR-C-linearis_contig88:108237..108341Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 108238..108341 -
1690881191.3124857-UTR-C-linearis_contig88:108237..1083411690881191.3124857-UTR-C-linearis_contig88:108237..108341Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 108238..108341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.8498027-CDS-C-linearis_contig88:104377..1045111622930676.8498027-CDS-C-linearis_contig88:104377..104511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 104378..104511 -
1690881191.207923-CDS-C-linearis_contig88:104377..1045111690881191.207923-CDS-C-linearis_contig88:104377..104511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 104378..104511 -
1622930676.8684871-CDS-C-linearis_contig88:104887..1049991622930676.8684871-CDS-C-linearis_contig88:104887..104999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 104888..104999 -
1690881191.217231-CDS-C-linearis_contig88:104887..1049991690881191.217231-CDS-C-linearis_contig88:104887..104999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 104888..104999 -
1622930676.8875375-CDS-C-linearis_contig88:105423..1054361622930676.8875375-CDS-C-linearis_contig88:105423..105436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 105424..105436 -
1690881191.2267601-CDS-C-linearis_contig88:105423..1054361690881191.2267601-CDS-C-linearis_contig88:105423..105436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 105424..105436 -
1622930676.9033237-CDS-C-linearis_contig88:105481..1056391622930676.9033237-CDS-C-linearis_contig88:105481..105639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 105482..105639 -
1690881191.2383559-CDS-C-linearis_contig88:105481..1056391690881191.2383559-CDS-C-linearis_contig88:105481..105639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 105482..105639 -
1622930676.9303918-CDS-C-linearis_contig88:106215..1062621622930676.9303918-CDS-C-linearis_contig88:106215..106262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 106216..106262 -
1690881191.2475286-CDS-C-linearis_contig88:106215..1062621690881191.2475286-CDS-C-linearis_contig88:106215..106262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 106216..106262 -
1622930676.9460242-CDS-C-linearis_contig88:106546..1066311622930676.9460242-CDS-C-linearis_contig88:106546..106631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 106547..106631 -
1690881191.2654994-CDS-C-linearis_contig88:106546..1066311690881191.2654994-CDS-C-linearis_contig88:106546..106631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 106547..106631 -
1622930676.9692478-CDS-C-linearis_contig88:107221..1073421622930676.9692478-CDS-C-linearis_contig88:107221..107342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 107222..107342 -
1690881191.2764213-CDS-C-linearis_contig88:107221..1073421690881191.2764213-CDS-C-linearis_contig88:107221..107342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 107222..107342 -
1622930677.0108783-CDS-C-linearis_contig88:108208..1082371622930677.0108783-CDS-C-linearis_contig88:108208..108237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 108209..108237 -
1690881191.2965858-CDS-C-linearis_contig88:108208..1082371690881191.2965858-CDS-C-linearis_contig88:108208..108237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 108209..108237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16331.1

>prot_C-linearis_contig88.16331.1 ID=prot_C-linearis_contig88.16331.1|Name=mRNA_C-linearis_contig88.16331.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MDAQQLAVERSVRVVAHTRGMEWAPSPSPSVWRKRVALEGPQEAGRVTSV
VRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAP
SSKDGCVLWVKLRQHGGPSREHSRVDTKSMVWQDTETPGVRAKTLYSRVP
RHVESMRIEKWEAGAKFHRECPEMTEFLVLEGEARDDDASETFEQRSWLR
VPAGGKISMTSVVGCEVFIKEGEWLPPATEES*
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mRNA from alignment at C-linearis_contig88:103787..108341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16331.1 ID=mRNA_C-linearis_contig88.16331.1|Name=mRNA_C-linearis_contig88.16331.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4555bp|location=Sequence derived from alignment at C-linearis_contig88:103787..108341- (Chordaria linearis ClinC8C monoicous)
GTCCAATAAAACCGCACTCCATGATCACTCCCGCCCTCACCCCAGTCGTC
CTACCTCTCGTTGCTCTTCTCAGTTAACATCGACTTCGTCCCAATAGTCC
CAGCATGGATGCTCAACAGCTTGCGGTCGAAAGGTATGTAGGAACAAGGA
ACATGACCCGCAGAGCGCCGCAGCACATCCTTGAACCAGGCCAGCGCGTT
CAGCCCCGATTTTACACCACCGATCTAGCCTGCATATCTACAGGCGCCGC
TTTCGTCTATGTCACCTGCACTCTTGCTACCTTTGCTGTGCTCAACAAGG
TCCACTTGTTTCAGGCCGAAACACACCAAGTGACGTAGAACTCTGTAGTC
TAGCTATAGTCTAGACGATCAGTGGTTTCACGTGCTGGCTGCTGTATCTT
TGACAGGATCGCAGTAGAAACGTGTAGCGCTAGTGGTGAAGGGGATTAGT
TTGTGATGATTTCTCTTGTGTTGTCTATTTCGTCGCCCCGCGCTCTCGAT
GTAGATTCAGTAGGCTCCTGCTGCTGTTGTCTAGTTGTCTAGCCCTACAT
AGATTGACCATGTGTGCCGGCCACAGAGCAAAGTTAGCTGGGCATCAGGG
CTTGACCCAGAACACAAAGAGAGGGAGTGAGTGAGAGAGAGCGAGAGCGA
GAGAGAGAGAGATAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGACGCAAAACAGCTGCGTATGATAGCAATAAGGCTC
CTTTTCCACCATTTCGCCTCACGCACATGGCATTACATACACACACACAA
GGTGTTGTCTTGCCTTCGAGAAGTAAATATGTGTGTTGTGGTGCTTTTTC
CGATTTGTTGTGCACATACCACGTCGTATTACCGAATGCTTTCTGCAAGA
CTGTCCGCAGCTCACGTCCGTCGATGATCGATTTCGTACGGCACAACGCC
GCATGCGTGCCGACCCGTATTCTTAAATCTGCTGCTGTTGTACCCTCAGG
AGCGTTCGCGTGGTTGCGCATACACGTGGGATGGAGTGGGCCCCGTCTCC
ATCCCCGTCGGTGTGGAGGAAGCGCGTTGCTCTTGAAGGCCCTCAAGAGG
CTGGAAGGGTCACGTCCGTGGTGAGACTTCTCTACCGACTGCTGTTGTTG
TAGCATGCACACGGTCGCCATTGGACAACCGTCCTAGCACAGGGGTACAA
AGCCGATTTTTGAGTTGTGGTTCATGCAGCGGACGGAGCTCTTGTATCGA
CTGAAAATGTGCTAGTTTTTTTTTGGTACTTGGAAGTGTTTGTGATTTTT
GAGGACGATCGTGTAGCTTGTGGGCTGTGGGTATTGAGACCGCAAATGGT
TTCCAAGCAATCTCTTTGTACATACCTTCGGCCAGATTTTATTGTGTCAA
TTAACTTCGTGGAGGTGGCAAGCAATATCATTTTAGGGCACGTACTACTA
AGAGCTTGCAAGCGGGATGCACAGGCTCTATGTAGGCTAGTGCCCACAAA
GTCTACCTACCTACCTGGTACGTTTCTGCGTGTTCTGCAGTTCGCATTCG
AACGAATGCTCGGTGCAATCGCTGTCTTTCTTTTTGTGAACTCCTCTCGC
CACCTGATCCCCTCTCGGGCTTTTTATTGTTGTGGCTGCGTTGGTTCGGC
CTCTAGACTAGTCGCCTGTTGTCGCCTGTTCTGTATGGCACGGTACGTTC
ACACAAATAGGTGCGCTACGACGCCAACAGTCAGTTCAACGAGCACGGCC
ACCCCGATGGCGAGGAGATTCTCGTGCTCGAGGGTTCTTGGCAAGGTAGG
TCATTTTGGCTGGGAAGGGATTAGTTCTGCGAAACACTCCTGAGCGCATT
CTTTCGAGACATCTGGCATCTGGCATGGTACGGCAGTATTGAGGGCTTCA
GCTCTTGCTCTACTACCGCCAGCGCCGTCTCTGTCGTACCATACCATACC
GTGCGCCCGTGCGCGCCCATCTACGCCTCATTACCCCCCAACTGACGGAT
GGTTACTCTGTGTTGTATTGTGCTGTGCTGTGCGTTTCATGTCGGCACTT
GCGGCTTTCTGCGTCGAGTCGAATCGAAGATGCCAACGGAGATCACCCTG
CTGGCACATACATGCTCAATCCGGAGGTGCGAGACTTGTGTACGGAAGTT
CGACTCCATGAGATACAGACGTTGGCCTGTGCGTTGCTCAGTCCTACAGA
GCTTAAGAATATGCAGCCCCAATCCTGTGCGCCACTACACAGAGGTGGAT
CGGCAGCTCGTGGTTGCTTGTTCAGTCTCATTCAGCGTGTGTGCCGCGAT
AGAAGCTATGCTGGTTTGCTGCAGGGTACTCAGCGGGATCCTCCTGCATG
CCCTTACAGGATCGTTATCCTTTCCTAGGAGCACTTGCGGTCGTGTGGTG
TGGGGTAGGCACCCCGTTGTGCATACATGTACGCAGCATCGCGTTTACAA
GTGTTCATCTCCGCCCTTACTTGTTTTTGTTCCTTTTCCATTGCTTCGCC
ATTTGTGTTTTCGTGCGGTATAATTGGCGACCGGAGGTGTTGTTGTTTTT
GCCAAATACTGCCCATGAAGCTAAGCTTCGGTGGCTGGGTGCACGGTCGT
GCACCATACCCGAACTGCAAGAAATCTGATCATCCCATGCGCTCTCTTCC
CGAACCCTCGCTAATTGTACGACAATGCCGCTGCGGGGCACCGTGACTGC
AGGGTTTCCGCCACGCCCCCTCCTCGAAGGACGGGTGCGTGCTGTGGGTC
AAGCTCCGCCAGCACGGCGGCCCTTCCCGAGAGCACAGCCGCGTGGATAC
GAAGAGCATGGTGTGGCAGGACACAGAGACGCCGGGGGTGAGGGCCAAGA
CCCTCTACTCGTAAGTCTTAGTCTTAGGTCGTTCCCTCTACTCGTAAGTC
TTAAGTCGAGTCCCTCGTGTTTAGCAACACGGCGTTTAAAATGGTTGTAC
ATAAGGTGCCGGCATTAAATGTCGTTGAAAATTCTTGCCGAGAGTGCTCC
CTTGTTTTGGTGTGATGCCGCGTTGTCCCCCTGGGCTAGCCCCGCGGTAG
CCGTGCATGCCGTTGTTGCACCTACATACCTGTGTTGATCACTTGGTGCA
CTGCAGCCTCGTCCCTCGAGCGTTGTCCTGCAAGAGCTGGCAGGTAGGTA
TACTTGAGCCAATACGGCTGCTTGGTTGCCCCCCCCACCACGACGTTGCT
GGCAACCAGGCTCCTGCCTCTCGATGCGAAGCACAACCATCCTGACCTAA
AATTGCGGTCGATGCTCAAGACATTTTCGCTACAATAACCCTGGCCTAAA
TGCTAACCTCCCTCCCTCCCTCGATCGAACATGCACCCCGAGCACGTGGA
GTCGATGCGCATTGAGAAGTGGGAGGCTGGCGCGAAGTTCCATCGCGAGT
GCCCAGAAATGACAGAGTTTCTCGTGCTCGAAGGTGAAGCACGCGACGAT
GACGGTGAGAAAAGAAGATGCTCCATCGACGCTGCTTGAACGGCTCACAC
TTTGGTGGTATGCAGTGTTTTAGGGGCAAAGTTTGCACACGATTGTTGAG
CCTTGGAGTATTCAAGCCCCAGGAGGGGATCGGAATGCCGAATAGCGAAT
AGTTTTATTTTTTCTCCAGAAATGGCATTGCTCCGATCATGTGCAGGATG
GTGTGGTGTGATTTTCTTTTCCCCGAGCACGAAACCGCAACATGTTGGCT
CCAAAGAACCCGCAATAGCTTCCCTTCTCGAGGGCAATATCTTCCACCTC
TCTATCCGATTCGCTGACTGCCCCTTCGGCCTCCCGCTTCTCAACACGTC
CCGCGTGGCTTTTCCTTGCTGGTTGTGCAGCAAGCGAAACCTTCGAACAG
CGGAGCTGGCTGAGGGTGCCCGCCGGGGGGAAGATCTCCATGACTTCTGT
CGTGGGCTGTGAGGTGTTCATAAAGGAGGGAGAGTGGCTCCCACCCGCTA
CCGAGGAAAGCTGAAGCTGTCAACATAACATCGACAATAACGTTGACGTT
GTCGTTATTTGTCACATTAACAGCCTCTTGGTCGGGCTAAGCACTCGGAC
TGTCCCGTAGATTATGCGTCCACCAGCCAAAGGTTAAAGGGCCACAGGGC
AGCTCATGCCCCTCAGGGCTGCCAAGTACAGCGCTAAGTTTTGTGTTCAT
GCGACGGTCGACAAATGCATGAATGGCTGTATATCTACTTCAAGAAGTGT
GTGTGTAGTGAGCTTAAGCGTAGGGTCCGAATGTATTTTCCTGTGGACTG
TGGGGTTATCGTTGCCGTTGGTCTGCACGTACGATAGGTGTTGCGTGCGG
GTACTTAATTCCCCGCAGGCATACACCTTTCAAGTACCTATTTGAGCCTC
ATCATATTGGAGAATCGTTTTATTTTCAAGTTCTGGCGCCGACTGCGGTA
GCGTTGTAGCGCCGGCTGTTCTGGATGCATGCAGTAGAGTGTTGATCAGG
CGTATCGAAAACACAGCAGTAGAACAGCAGCCTATATAGAGCACATCGAT
TGCAGCTCGCAAGGTATATCGTCTACAATACGCTGCTGCTGCTGTTGTCG
TTCGG
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Coding sequence (CDS) from alignment at C-linearis_contig88:103787..108341-

>mRNA_C-linearis_contig88.16331.1 ID=mRNA_C-linearis_contig88.16331.1|Name=mRNA_C-linearis_contig88.16331.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig88:103787..108341- (Chordaria linearis ClinC8C monoicous)
ATGGATGCTCAACAGCTTGCGGTCGAAAGATGGATGCTCAACAGCTTGCG
GTCGAAAGGAGCGTTCGCGTGGTTGCGCATACACGTGGGATGGAGTGGGC
CCCGTCTCCATCCCCGTCGGTGTGGAGGAAGCGCGTTGCTCTTGAAGGCC
CTCAAGAGGCTGGAAGGGTCACGTCCGTGGAGCGTTCGCGTGGTTGCGCA
TACACGTGGGATGGAGTGGGCCCCGTCTCCATCCCCGTCGGTGTGGAGGA
AGCGCGTTGCTCTTGAAGGCCCTCAAGAGGCTGGAAGGGTCACGTCCGTG
GTGCGCTACGACGCCAACAGTCAGTTCAACGAGCACGGCCACCCCGATGG
CGAGGAGATTCTCGTGCTCGAGGGTTCTTGGCAAGGTGCGCTACGACGCC
AACAGTCAGTTCAACGAGCACGGCCACCCCGATGGCGAGGAGATTCTCGT
GCTCGAGGGTTCTTGGCAAGATGCCAACGGAGATCACCCTGCTGGCACAT
ACATGCTCAATCCGGAGATGCCAACGGAGATCACCCTGCTGGCACATACA
TGCTCAATCCGGAGGGTTTCCGCCACGCCCCCTCCTCGAAGGACGGGTGC
GTGCTGTGGGTCAAGCTCCGCCAGCACGGCGGCCCTTCCCGAGAGCACAG
CCGCGTGGATACGAAGAGCATGGTGTGGCAGGACACAGAGACGCCGGGGG
TGAGGGCCAAGACCCTCTACTCGGTTTCCGCCACGCCCCCTCCTCGAAGG
ACGGGTGCGTGCTGTGGGTCAAGCTCCGCCAGCACGGCGGCCCTTCCCGA
GAGCACAGCCGCGTGGATACGAAGAGCATGGTGTGGCAGGACACAGAGAC
GCCGGGGGTGAGGGCCAAGACCCTCTACTCTCGAGTCCCTCGTTCGAGTC
CCTCGTCACGTGGAGTCGATGCGCATTGAGAAGTGGGAGGCTGGCGCGAA
GTTCCATCGCGAGTGCCCAGAAATGACAGAGTTTCTCGTGCTCGAAGGTG
AAGCACGCGACGATGACGCACGTGGAGTCGATGCGCATTGAGAAGTGGGA
GGCTGGCGCGAAGTTCCATCGCGAGTGCCCAGAAATGACAGAGTTTCTCG
TGCTCGAAGGTGAAGCACGCGACGATGACGCAAGCGAAACCTTCGAACAG
CGGAGCTGGCTGAGGGTGCCCGCCGGGGGGAAGATCTCCATGACTTCTGT
CGTGGGCTGTGAGGTGTTCATAAAGGAGGGAGAGTGGCTCCCACCCGCTA
CCGAGGAAAGCTGACAAGCGAAACCTTCGAACAGCGGAGCTGGCTGAGGG
TGCCCGCCGGGGGGAAGATCTCCATGACTTCTGTCGTGGGCTGTGAGGTG
TTCATAAAGGAGGGAGAGTGGCTCCCACCCGCTACCGAGGAAAGCTGA
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