mRNA_C-linearis_contig87.16316.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16316.1
Unique NamemRNA_C-linearis_contig87.16316.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:704341..708672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930665.9194582-CDS-C-linearis_contig87:704340..7043861622930665.9194582-CDS-C-linearis_contig87:704340..704386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 704341..704386 +
1690881185.7851279-CDS-C-linearis_contig87:704340..7043861690881185.7851279-CDS-C-linearis_contig87:704340..704386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 704341..704386 +
1622930665.9336607-CDS-C-linearis_contig87:708523..7086721622930665.9336607-CDS-C-linearis_contig87:708523..708672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 708524..708672 +
1690881185.7976432-CDS-C-linearis_contig87:708523..7086721690881185.7976432-CDS-C-linearis_contig87:708523..708672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 708524..708672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16316.1prot_C-linearis_contig87.16316.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 704341..708672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16316.1

>prot_C-linearis_contig87.16316.1 ID=prot_C-linearis_contig87.16316.1|Name=mRNA_C-linearis_contig87.16316.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=65bp
GEQGSPPRRSSYFGCGPCERRGIQHRFSPMWPARRCAQEAAHTRGKDASD
READGGYCLPSRRE*
back to top

mRNA from alignment at C-linearis_contig87:704341..708672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16316.1 ID=mRNA_C-linearis_contig87.16316.1|Name=mRNA_C-linearis_contig87.16316.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4332bp|location=Sequence derived from alignment at C-linearis_contig87:704341..708672+ (Chordaria linearis ClinC8C monoicous)
GGTGAACAAGGCAGTCCGCCGCGTCGGTCGAGCTATTTTGGATGCGGTAT
GTCAGCGTCCATGGACTCTCGATTTTTTTTTGTCTGCCTGGCCGGCTATA
TTTCTATTTTTAGGACCCGGCACGGAATTCCTGCTGCGGCGGGCATTGTA
GGGGTAACCAAGATAGGACCTGGGGGGGTGTGCCCTCGGGTTTGGTGATT
TTGGCAGTCCAGTTACAGTAGTTTACTCCGTATTTTTTTCTTTATTTTTG
CCTCTCATAGCGTGCGGAAGGAAGCGGCAGGCTCCAGACTAATTATTTTG
TTGGTAATTTACGTAGACATACAGAGAAAGAAGCTCCATGCTGTGTCCTC
CATTCTAGATTACTGCTGCGGTGGTGTGTGGTGTGTGTGTGTGTGTGTGT
CCGTTTTCTTCGCCCAGGACCCCCTTCGGTCCGTACGGGCCAAACAGACA
CGGCCAAGCCCCGCGGTCACAGGTTCACTACTTCCGTTTGTATCACTTCG
GAGCATAGTCCAGGAGAAATACAAAATACATACTTCCTCTGTCCCATAAG
TCTGGGTTGTTATGTTTTTGCGCCCCCTTAACGGTGTCCGATCTGTTTTC
CGATTTTTTTGTTGAATTCTCCGGCGTTTTTTTAGCAAGAAAAACTTTTT
TTTTTTTTACGCTGGTGCTTGAACCATGCGGCGGAACGGCCGGAAAACAT
TGAGTCGGCCCAAAAACGGCCATATTTTGCCCCTTTCCAGGAGGTGGGTG
GGTGGGGCACTAAGCCTAACCCCCCCCAGAAAAAACAAGAATTCTCCCCA
ACCTCAAGGCTAACCCTCCCTCTCCTCAAACATCCATGTCGCGTCCCCCT
ATGCTAAAACCAGTATAATAGTGGCTCCCACACTAAAACCAGGACACTAA
GGTCCAACACTAAGGTCCAACACTAAAACCAGTACACTTGGGGGGCCCAC
ACAAAAACCAAGACACTTGCGGGGCAAAGGAACAGCAGTAGGGCAATACC
CAACCCCCCCCCTCTACTAGACGATCCATGTCGCGTCCCCCTATACTAAA
ACCAGTATAATAAGGACCTCACACTAAACCCAAGACACTCGGTGGTCCCA
CACTATAACCAAGACACTTGGGGGTCCCACACTAACACCAAGACACTCGG
GGGGACCACACTAAAACCAAGACACTTGCGGGGCAAAAAAAGAAAAAATC
GATTACTCGTCTTCCTCGTCATCACTTGGACTCGATGCGAGCCAGGCGTA
AGCCTTCTCGAACGTCTCCTTATCGTACTTACCACCTCGCCGCCCTTGGG
GCGAGGTGGGGGGGTACTTGGGGGCATATCCATCGTTTGTAGTGTGTGTG
GGGTAGGTTTGGGGTGGTAATCACGAATTATCTCAAGAATTCTCATAAAA
ATTCTCAAAAAAGTTCTCAAAAAAATCTTGTCAAAAAGGGCCAAAATGGG
CATATTTTGACCTAATTTTAGTGTATAACACGGTCTTCGATTTTTATTTT
TTATTTTTAGTCAGCTTTGTATGTGTTTTTCCTTTCTAACGCACCCGGCC
AAAGGCTAAACGGCAACGTGTAAGTACCCTAACGACTGCGCATTCATAAC
AGCCCAGACTTATGGGACAGAGGAAGTACACATGTATGTATCTCCATTTA
CGTCCTCCTATCATACATGTATGTATCTGTGTACTTGGTACAACCTGTCA
GTAAATGAGACGGGGCTGGGGGTTGCATGCGAGTCCTTTTTAAGCGACAA
GGGAGAAAGCGCTCCCCCCGCGGGCGTGTACTTTTCTTACTTTTTGCGGC
TGGTTGTTTTGCCCCTGTTCAAGGAGAGCAAGTTGGCTGTGCACAACAGA
GAGTTTTGCCCTGTAGCTTGTTGGCTGATACCGTTGGATCCGAAATTATC
GGAAATAGAACAGCTGTCGGATCAATTTCCAATGATTCCCATTACTCTCT
GAGTATTATCTTGGTCGCCCTCCGACAATCAATCGCGGATATCGGATCAA
TACTCCTAAATTTCAATAGCACTACATAATACTCGGCAGTGTAGTAGCAC
TTCCAAAAACCTGGATCCAGCCTCGTGTACTTCTAGACTAGAGTTTACAT
GCTTTTGCGCCGCAGGAGATCACATGCCGCACCATCTCCTTGGCCCCGAC
CATTATCATGACATAGAAAGCCCTCGAAGGCTACCTCGAGGTGGCCTTCG
TTTCTGTAACGCTGGCGCACGGCGCTTTACTCTACTAGCTAATCCGCGCA
AAGTTGCTTGAGCACCGAAACCGTCTTGGTGTGGACATTTTCTAAATGAC
CAAGGTGGCTGCCATTTCAAAATGGGGCTCCAACCACTGCTGAGGTCACC
AGCGGTTGCTCTGAGACAGTCTTCAAGTGCACGTACGTGTGTCTGTCTCC
TCGTAGCCTCTCGTTGCGTGTGTGAGTCCCGGCATGCATGCGCCGCCACA
ACCTCCAAAATCGCTAAAAATCGCTATTTCTGGGCACCGCTGTTCGACGC
ACAAGCATCCAACTGAAGCCTGCCCTTCGGCTACGTTTCGCCGTCGGGGT
GTTCTTCGATATGAATGCTTTTAACATCGGGGCCAAGGTAAATGTGCGGC
ATGGAAAAGCTTTCGGCGCTTAGTTCGACTAAAACTAAACTGGCTCTACA
CGGTGAATTGTAAACCAGGGGACGCCAGATTAATGTCCCGGGAAAAAAAG
GCACTTTTTTTGGTGGCGGCGCATGTTCGTCGGTAATGTGTCACTTTCGG
CCACCGAGGCCACAAATTCGTCCGTAATGTGTCTCGTACCAGTGTTGAAC
TAGCTCAGCACGCAGCACACTCAACACAGAGCACCGGTAGGATGCACGAC
GGAGGAAGTAACCTCCTGTCCACGTGTTGTACTAGCTGATGGTGTGAGGT
GATGTGCGATGACACATACACACACAGCAGCAGCAGCAGCAGCACCACAG
CGTAGTAGCAGCAAGAAAGACAAGTTTTCCGCGTCTGGCCAACACATACT
ACACACAAGGCGCCTGTACTCGTGCTGTTGTTGATGTTTGTCTGTCGTCC
TCTCGCTGCTGCTGCTGTCGAGCCAGAGACTGGGCTGTGGCTGTCGAGCC
AGAGACTGGGCTGTGCTGTAGTCTATATCTTGCCCGTAGTGTAGGTATTT
CGGGCGACGGTTCGAAGAAACCCTGGCACGCCCACCCTCGATCTTGGTTC
ATTTTGCTACAACTTGGCTGTCTGCAAACTACTACTGCTGCTCTGCTTCT
CGTGGCTATGGGGCGAGGAATGGAACATAATAAGCGTCGTGGCCGTTGGG
TATTTCGGCCGTCCAGATCATTTATCTTTTGAGAAACCACAACTCCTTTG
CTATCGCTACGAGCCAGTAGAGCCCGCATAGTGTGATGGTTTTCAGCAGC
AGCAGAAGCAGAGCAGTAGCTGACCATTCAAGGCTTCTTGCACCCCTCTT
GCTTGCCAAAACAGAGGAGAATTTTTCTCTTCTTTTTAATTTTTTTAGGG
CGACGGCCAAAGCAAGGTATACCTCGTACTTTTCCGGCCTAAACAAGGGG
TCTTATTCCTTGTTCAAGTGAAATTTCCTACCGAGCACCCTCTTTTGGCC
GAAAAAGTACAAGGTATACCTTGTTTTGGCTACTCTACTCCCGGCTGCAC
CTTGTTTTAGCCGGAAACCGGGGCTCTTTATCCGGTAGCAGAGGGCCTAG
CGCGACCTGATAGTCCGCGCAAAAAGTGTCCGCCCTGCTTACATTTTCTC
GTGCGGATTCTCTCTCAACCAATAGCCTCACCCAACCCGAATAAGCCAAC
TGAATAGCCCCGTCACACTTGAAAAAAAAGGTTTTATGCTCCAGCCGCTC
GTAGTTGCGCGGCCGAGTGTCCACCCCGACCCCGTCCCCGAACATGTAGA
CATGGAAATATGTCAATTGTTGGCTCTATTGTCGCTGTGCATGGGCTAGA
CTCTTCTTTGATGGTGATGGGACAGCCTCCGAGACCCTGCGCGAGGTTGG
GCGTGGTAGGCCCTGCACGTTGGTGTTCGGTACCACATATACCCTGTTTT
GGCCAGAAAAGTACAAGGTATACCTTGTTTTGGCCGTTGCCGTTAAAATT
TTGCCCGGAGTGCGGCCTCGCAAACTTGTATATTTGCCGTGTACCCTGAC
GTGCGTATGTTGTATGGATTCCATGCCCCTCAGGTCCCTGTGAACGAAGG
GGAATACAGCACAGGTTTTCGCCTATGTGGCCAGCTCGCCGATGTGCTCA
AGAAGCAGCTCACACCCGAGGAAAGGATGCTTCTGATCGAGAAGCTGATG
GGGGGTACTGCCTTCCAAGTCGTCGTGAGTAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig87:704341..708672+

>mRNA_C-linearis_contig87.16316.1 ID=mRNA_C-linearis_contig87.16316.1|Name=mRNA_C-linearis_contig87.16316.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at C-linearis_contig87:704341..708672+ (Chordaria linearis ClinC8C monoicous)
GGTGAACAAGGCAGTCCGCCGCGTCGGTCGAGCTATTTTGGATGCGGGTG
AACAAGGCAGTCCGCCGCGTCGGTCGAGCTATTTTGGATGCGGTCCCTGT
GAACGAAGGGGAATACAGCACAGGTTTTCGCCTATGTGGCCAGCTCGCCG
ATGTGCTCAAGAAGCAGCTCACACCCGAGGAAAGGATGCTTCTGATCGAG
AAGCTGATGGGGGGTACTGCCTTCCAAGTCGTCGTGAGTAAGTCCCTGTG
AACGAAGGGGAATACAGCACAGGTTTTCGCCTATGTGGCCAGCTCGCCGA
TGTGCTCAAGAAGCAGCTCACACCCGAGGAAAGGATGCTTCTGATCGAGA
AGCTGATGGGGGGTACTGCCTTCCAAGTCGTCGTGAGTAA
back to top