mRNA_C-linearis_contig87.16292.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: D8LL40_ECTSI (Centrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL40_ECTSI) HSP 1 Score: 276 bits (706), Expect = 6.680e-93 Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 1
Query: 1 MIRRAEAIRTPRKSMARR-SEARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFVVRRNEKR 513
MIRRAE +RTPRKSMA SEARVPLTA QK+EVDEAFG+FDYAKTGVL LHEVKVL+RSLGFPVRRAEVPLIVHRA+PDSDG+VDLPTFRLIME RYAKLDPEEEI+KAFRLFD EGTGKITV+NL+RV+KELGD +LG+RELQAMIDEFDKNLDGSVSLDEFV NE+R
Sbjct: 1 MIRRAEGLRTPRKSMAGGGSEARVPLTAEQKKEVDEAFGLFDYAKTGVLGLHEVKVLIRSLGFPVRRAEVPLIVHRANPDSDGEVDLPTFRLIMETRYAKLDPEEEIKKAFRLFDIEGTGKITVQNLRRVSKELGD-NLGERELQAMIDEFDKNLDGSVSLDEFVYIMNEQR 171
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A7S3GV94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV94_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.650e-47 Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 1
Query: 73 LTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
LT QK+E+ EAF +FD KTG +DLHE+KVLMR+LGF V++ EV +VH DP + G VD F IM RYA DPEEEIRKAF+LFD + TG+IT+KN++RVA+ELG+ +L + ELQAMIDEFD++ DG +S DEF+
Sbjct: 15 LTEDQKQELREAFELFDANKTGSIDLHELKVLMRALGFDVKKPEVVKMVHDVDPSNVGSVDYEQFLEIMSDRYASRDPEEEIRKAFQLFDDDHTGRITLKNMKRVARELGE-NLSEEELQAMIDEFDRDQDGEISNDEFL 153
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A7S1U7H6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7H6_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.790e-47 Identity = 83/147 (56.46%), Postives = 110/147 (74.83%), Query Frame = 1
Query: 52 RSEARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
R R LT QK+E+ EAF +FD KT +DLHE+KVLMR+LGF VR+ EV +VH DP +DG V+ F IM +YA+ DPEEEIRKAFRLFD + TGKI++KN++R+A+ELG+ +L + ELQAMIDEFD++ DG ++ DEF+
Sbjct: 44 RRRIRPMLTDDQKQELREAFDLFDSDKTSSIDLHELKVLMRALGFDVRKQEVLKLVHEVDPHNDGSVNFDQFMEIMTDKYAERDPEEEIRKAFRLFDDDQTGKISIKNMRRIARELGE-NLSEEELQAMIDEFDRDNDGEINEDEFL 189
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A6S9FI83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FI83_HETAK) HSP 1 Score: 159 bits (401), Expect = 1.550e-46 Identity = 80/142 (56.34%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 64 RVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEF 489
R+ LT +K E+ EAF +FD KTG +DLHE+KVL+R+LGFPV++ EV +VH DP +DG VD+ T+ IM+ +YA DP+EEI KAF LFD + +G I+ KN++RVA+ELG+ +LGD E+QAMIDEFD++ DG +S DEF
Sbjct: 24 RIDLTEDEKIELKEAFTLFDANKTGSIDLHELKVLIRALGFPVKKQEVLKMVHDVDPHNDGFVDMDTYMEIMQDKYALRDPDEEILKAFALFDDDSSGFISAKNMRRVARELGE-NLGDEEIQAMIDEFDRDQDGEISRDEF 164
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A7S2V697_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V697_9STRA) HSP 1 Score: 156 bits (395), Expect = 7.680e-46 Identity = 77/148 (52.03%), Postives = 111/148 (75.00%), Query Frame = 1
Query: 49 RRSEARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
++ + R LTA ++ E+ EAF +FD TG +DLHE+KVL+R+LGFPV++ EV +VH DP ++G VD+ + IM+ +YA DPEEEI KAF+LFD + T KI++ N++RVA+EL + +L D E+QAMIDEFD++ DG +SLDEF+
Sbjct: 9 KKKKKRTELTAEERAELKEAFDLFDARHTGRIDLHELKVLIRALGFPVKKNEVVRLVHDVDPYNEGIVDMDQYMEIMQEKYAARDPEEEIIKAFKLFDDDNTNKISMNNMRRVARELNE-NLNDEEMQAMIDEFDRDQDGEISLDEFI 155
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A812R5A4_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5A4_SYMMI) HSP 1 Score: 152 bits (383), Expect = 4.340e-44 Identity = 77/144 (53.47%), Postives = 110/144 (76.39%), Query Frame = 1
Query: 61 ARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
A+ L+ QK E+ EAF +FD KTG +DLHE+KVLMR+LGF V++ ++ +VH DP++ G VD P F IM RYA+ +PEEEI KAF+LFD + +G+I+++N++RVA+ELG+ +L + ELQAMIDEFD++ DG +S DEF+
Sbjct: 2 AKSDLSDDQKLELREAFELFDADKTGSIDLHELKVLMRALGFDVKKPDIVRMVHDVDPNNSGSVDYPQFLEIMTDRYAERNPEEEIVKAFQLFDDDHSGRISLRNMKRVARELGE-NLSEDELQAMIDEFDRDQDGEISADEFM 144
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A7S2BMG2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BMG2_9STRA) HSP 1 Score: 151 bits (382), Expect = 9.450e-44 Identity = 76/147 (51.70%), Postives = 108/147 (73.47%), Query Frame = 1
Query: 52 RSEARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
R ARV LT QK+E+ EAF +FD K G +DLHE+KVLMR+LGF V++ +V VH DP ++G V+ F +M RY + DP+EEI KAF+LFDT+G+G I++KN++ +++ELG+ +L D ELQAMIDEFD++ DG ++ EF+
Sbjct: 13 RRRARVELTEDQKQELREAFELFDADKKGSIDLHELKVLMRALGFQVKKQDVVKFVHEIDPQNEGMVNFEQFMDLMTDRYTERDPDEEILKAFQLFDTDGSGSISLKNMRNISRELGE-NLADDELQAMIDEFDRDQDGEINQAEFM 158
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: F4P1K0_BATDJ (Uncharacterized protein n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P1K0_BATDJ) HSP 1 Score: 149 bits (375), Expect = 1.020e-42 Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 1
Query: 49 RRSEARVPLTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
+R +AR LT QK+E+ EAF +FD K LD HE+KV MR+LGF V++AEV ++ D D+ G +D F +M R DP EEIRKAF+LFD +GTGKI+++NL+RVAKE+G+ SL D ELQAMIDEFD + DG ++ EF+
Sbjct: 11 KRRQARPELTDEQKQEIQEAFELFDTDKDNALDYHELKVAMRALGFDVKKAEVLKVLRDYDKDNQGLIDFEGFNKVMTERILDRDPLEEIRKAFQLFDDDGTGKISLRNLRRVAKEIGE-SLDDEELQAMIDEFDLDQDGEINEQEFI 157
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A4VE20_TETTS (Basal body centrin protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=A4VE20_TETTS) HSP 1 Score: 146 bits (368), Expect = 1.170e-41 Identity = 73/140 (52.14%), Postives = 102/140 (72.86%), Query Frame = 1
Query: 73 LTAVQKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
LT Q++E+ EAF +FD KTG +D HE+KV+MR+LGF VR+ EV ++ D D G+++ F IM +Y + DP EEI KAF+LFD + TGKI+++NL+RVA+ELG+ L D ELQAMIDEFD++ DG +S +EF+
Sbjct: 18 LTEEQRQEIKEAFDLFDTEKTGTIDYHELKVVMRALGFDVRKTEVVSLIREYDKDETGRIEYNDFVEIMTQKYNERDPTEEILKAFKLFDEDNTGKISLRNLKRVARELGE-QLTDEELQAMIDEFDRDQDGQISEEEFL 156
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Match: A0A8J2SDG7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDG7_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.490e-41 Identity = 70/136 (51.47%), Postives = 103/136 (75.74%), Query Frame = 1
Query: 85 QKREVDEAFGIFDYAKTGVLDLHEVKVLMRSLGFPVRRAEVPLIVHRADPDSDGQVDLPTFRLIMEARYAKLDPEEEIRKAFRLFDTEGTGKITVKNLQRVAKELGDDSLGDRELQAMIDEFDKNLDGSVSLDEFV 492
++ E+ EAF +FD+ K+G L++HE+KVLMR+LGF V++ +V +H +P ++G VD + IM +YA DPEEEI KAF+LFD +G+GKI++KN++ VA ELG+D L D ELQAMI+EFD++ DG +S +EF+
Sbjct: 10 EQAELKEAFDLFDHEKSGKLNIHELKVLMRALGFQVKKRDVVKCIHDIEPQNEGHVDFSLYAQIMAEKYALRDPEEEILKAFQLFDHDGSGKISLKNMRHVAAELGED-LADEELQAMIEEFDRDQDGEISQEEFL 144 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig87.16292.1 >prot_C-linearis_contig87.16292.1 ID=prot_C-linearis_contig87.16292.1|Name=mRNA_C-linearis_contig87.16292.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp MIRRAEAIRTPRKSMARRSEARVPLTAVQKREVDEAFGIFDYAKTGVLDLback to top mRNA from alignment at C-linearis_contig87:309852..311729+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig87.16292.1 ID=mRNA_C-linearis_contig87.16292.1|Name=mRNA_C-linearis_contig87.16292.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1878bp|location=Sequence derived from alignment at C-linearis_contig87:309852..311729+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig87:309852..311729+ >mRNA_C-linearis_contig87.16292.1 ID=mRNA_C-linearis_contig87.16292.1|Name=mRNA_C-linearis_contig87.16292.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig87:309852..311729+ (Chordaria linearis ClinC8C monoicous)back to top |