mRNA_C-linearis_contig87.16291.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A6H5K8V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V8_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 2.110e-160 Identity = 247/272 (90.81%), Postives = 253/272 (93.01%), Query Frame = 1
Query: 160 MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDARAQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREARRVK 975
MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVIDDF+DERVCK YLCGLCPHDLFSNTKQDLGACDYLHDEELK QYEA AKG DYGYDK LESILVNHIQEVDKKISRSQRRLEEGGQGAMAMD SLR NEEIMKIEVQMSEIMKNAEAKGEEG+VDEAQELF+QAE LQ+TKA LEAKALQ SI +ARAQSAPLHL TSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESI +ER R K
Sbjct: 1 MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVIDDFKDERVCKAYLCGLCPHDLFSNTKQDLGACDYLHDEELKKQYEAAVAKGEDYGYDKHLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDTASLRNNEEIMKIEVQMSEIMKNAEAKGEEGDVDEAQELFEQAEELQRTKAELEAKALQDSIMEARAQSAPLHLATSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESIHKERAERLKK 272
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: D8LL39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL39_ECTSI) HSP 1 Score: 329 bits (844), Expect = 8.620e-108 Identity = 171/188 (90.96%), Postives = 178/188 (94.68%), Query Frame = 1
Query: 160 MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQ 723
MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGV+DDF+DERVCK YLCGLCPHDLFSNTKQDLGACDYLHDEELK QYEA+ AKG DYGYDK LESILVNHIQEVDKKISRSQRRLEEGGQGAMAMD SLR NEEIMK+EVQMSEIMKNAEAKGEEG+VDEAQELF+QAE LQ+TKA LEAKALQ
Sbjct: 1 MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVVDDFKDERVCKAYLCGLCPHDLFSNTKQDLGACDYLHDEELKRQYEADVAKGEDYGYDKHLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDTASLRNNEEIMKMEVQMSEIMKNAEAKGEEGDVDEAQELFEQAEELQRTKAELEAKALQ 188
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A8K1CCH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH2_PYTOL) HSP 1 Score: 229 bits (583), Expect = 6.360e-67 Identity = 134/267 (50.19%), Postives = 176/267 (65.92%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGADYGYDKQLESILVNHIQEVDKKISRSQRRLEE--GGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSI-TDARAQSAPLHLNTSNPTAQELGNATQ-----QKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREARR 969
MD+QRALLDELMG NR+ D E I+DF+D RVCK YLCGLCPHDLF NTK DLG C LH +LK YE +E D+GY+++LE LV I +V+KKISR+Q+RLEE G + MD+ + + E+++I ++ E+M+ AE G EGEVD + EL + E LQ KA +A A+ +S +D R ++ P + G A+ QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH+G++ IR K+E I E R RR
Sbjct: 1 MDAQRALLDELMGRNRDGDKPEEEINDFRDSRVCKRYLCGLCPHDLFQNTKMDLGECAKLHLPKLKTAYE-KERPSRDFGYEQELEKDLVKIISDVEKKISRAQKRLEEQDGERAPSLMDVENCK---EVLEITAEIQEVMEKAEEAGNEGEVDLSMELMAKVEELQMKKAEAQANAMLRSFRSDGRPAASATEGENGKPASDAAGAASSGPNVNQKLRVCDVCGAFLSIFDSDRRLADHFGGKLHLGYLQIRKKIEEIAEVRRERR 263
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: K3W7R4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7R4_GLOUD) HSP 1 Score: 219 bits (557), Expect = 2.670e-63 Identity = 136/290 (46.90%), Postives = 176/290 (60.69%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAE--EAKGADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKAL-----------------QQSITDARAQSAPLHL------NTSNPTAQEL-GNA-----TQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREARR 969
MD+QRALLDELMG NR+ D E I DF+ RVCK +LCGLCPHDLF NTK DLG C+ LH ++++QYE E E D+GY+++LE LV I EV+KKI R+QRRLEE GA A + +E+++I ++ E+M+ AE G EGEVD + EL Q E L+Q KA+ +A A+ ++ A A A NT A+ L GN QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH+G++ IR K+E I + R RR
Sbjct: 1 MDAQRALLDELMGRNRDGDKPEEDISDFRHSRVCKRFLCGLCPHDLFQNTKMDLGECEQLHLPKMRIQYEKEKMEHPTKDFGYEQELERDLVKFISEVEKKIQRAQRRLEEQD-GAKAPSLMDFENCKEVLEITAEIQEVMQKAEEAGNEGEVDLSMELMNQVEELKQKKATAQANAMLNAFKSEAAAATAGDAGNTAVNGAAANDAXXXXTTNDNDNTEKTLAEVLPGNPLASTNVNQKLRVCDVCGAFLSIFDSDRRLADHFGGKLHLGYLQIRKKIEEIADARRERR 289
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A485KC95_9STRA (Aste57867_2639 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC95_9STRA) HSP 1 Score: 216 bits (551), Expect = 2.570e-62 Identity = 121/257 (47.08%), Postives = 168/257 (65.37%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAK-GADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDARAQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEERE 960
MD+QRALLDELMG NR+ D E I DF+D RVCK +LCGLCPHDLF NTK D+G C+ LH +LK+ Y+ E + G DYGY+ +L L ++ +V+KKISR+Q+RLEE GA A + + N+E+++I +++++M+ AE G EGEVD + EL Q E L+Q K+ L+A + + +HL P QKLRVCD+CGA LSIFDS+ RLA+HFGGK+H+G++ IR K+ + +E
Sbjct: 1 MDAQRALLDELMGRNRDGDRPEEEITDFRDSRVCKRFLCGLCPHDLFQNTKMDMGECEKLHLPKLKLAYDNERQRSGRDYGYENELLRELERYVSDVEKKISRAQKRLEEQD-GARAPSLVGIETNKEVLEITAEIADLMQKAEDAGNEGEVDLSMELMAQVEVLKQKKSHLQANPSRSDAVVNDYDATQMHLMNLLPGNPLAMTNVNQKLRVCDMCGAFLSIFDSDRRLADHFGGKMHLGYMQIRKKIVEMKRAKE 256
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A2D4CIP8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIP8_PYTIN) HSP 1 Score: 221 bits (563), Expect = 3.480e-62 Identity = 129/265 (48.68%), Postives = 176/265 (66.42%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGA--DYGYDKQLESILVNHIQEVDKKISRSQRRLEE--GGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDARAQSAPLHLNT--SNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREARR 969
MD+QRALLDELMG NR+ D E I +++D+RVCK +LCGLCPHDLF NTK DLG C LH +L YE+++A D GY+ +LE LV I +V+KKI+R+Q+RLEE G + MD+ + + E+++I ++ E+M+ AE G EGEVD + EL Q+ E LQQ KA +A A+ +SI A + + +T + A ++ QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH+G++ IR K+ I E R RR
Sbjct: 194 MDAQRALLDELMGKNRDGDRPEEEITNYRDKRVCKRFLCGLCPHDLFQNTKMDLGECAQLHLPKLLAAYESDKAANPNLDLGYEMELEKDLVKIISDVEKKIARAQKRLEEQDGERAPSLMDVENCK---EVLEITAEIQEVMQKAEEAGNEGEVDLSMELMQKVEELQQKKAEAQANAMIRSIRPAAPKETGENGDTDGAKSAADAKASSVNQKLRVCDVCGAFLSIFDSDRRLADHFGGKLHLGYLQIRKKITEIAETRRERR 455
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A067BJQ2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJQ2_SAPPC) HSP 1 Score: 213 bits (541), Expect = 4.830e-61 Identity = 131/271 (48.34%), Postives = 177/271 (65.31%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGA-DYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLE------------AKALQQSITDARAQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREAR 966
MD+QRALLDELMG NR+ D + I DF+D+RVCK +LCGLCPHDLF NTK D+G C LH +LK+ YE + AK DYGY+ LE LV ++ +V+KKISR+ +RL+E GA + + N+E+++I +++E+M+ AE G EGEVD + EL + EAL+ KA+L+ A AL + A+A + + NP A N QKLRVCD+CGA LSIFDS+ RLA+HFGGK+H+G++ IR K I+E REAR
Sbjct: 1 MDAQRALLDELMGRNRDGDKPQEDIRDFRDQRVCKRFLCGLCPHDLFQNTKMDMGECPKLHLPKLKLAYEEDRAKNQRDYGYEADLERELVRYVSDVEKKISRALKRLDEQD-GARVSSMLDIENNKEVLEITAEIAELMQKAEDAGNEGEVDLSMELMAKVEALKVKKAALQGVPSAVLASTAGADALMPEVDVAQA--TLMAVLPGNPLAMTNVN---QKLRVCDMCGAFLSIFDSDRRLADHFGGKMHLGYMQIRKK---IVEMREAR 262
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: F0WNG5_9STRA (Uncharacterized protein AlNc14C170G7990 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNG5_9STRA) HSP 1 Score: 210 bits (535), Expect = 4.230e-59 Identity = 125/271 (46.13%), Postives = 170/271 (62.73%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDARAQSAPLH---LNTSNPTAQEL-------GNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREARRVK 975
MD+QRALLDELMG NR+ D I D++D RVCK +LCGLCPH+LF NTK DLG C LH L+ +YE + K + GY+ +LE L+ I ++DKKI R+Q+RLEE +G+ A + + +E+++I ++ E+M AE G EG+VD + EL ++ E L+Q KA +A A+ QS+ A+ L P EL QKLRVCD+CGA LSIFDS+ RLA HFGGKLH+G++ IR K+E I E R+ +R K
Sbjct: 1 MDAQRALLDELMGRNRDGDKPNDEIKDYRDRRVCKYFLCGLCPHELFQNTKMDLGECPKLHIPNLRTKYEKDPKKSS--GYEYELERELLRFISDLDKKIYRAQKRLEEQ-EGSKAPSLMDVENCKEVLEITAEIQEVMLKAEEAGNEGQVDLSMELMEKVEDLKQKKADAQANAMLQSVQGVGARPPDYRKGGLEMKAPGLSELLPRNPLASTDVNQKLRVCDVCGAFLSIFDSDRRLANHFGGKLHLGYLQIRKKVEEIAELRQEQRRK 268
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: W4FWD9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWD9_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.990e-59 Identity = 121/268 (45.15%), Postives = 169/268 (63.06%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAK--GADYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDARAQSAP---------LHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEEREA 963
MD+QRALLDELMG NR+ D E I DF+D RVCK +LCGLCPHDLF NTK D+G C+ LH +LKV Y+AE++K DYGY+ L L ++ +V+KKI+R+Q+RLEE +GA + + ++E+++I +++++M+ AE G EGEVD + EL Q E L+ K +++A + + P LHL P KLRVCD+CGA LSIFDS+ RLA+HFGGK+H+G++ IR K+ + REA
Sbjct: 1 MDAQRALLDELMGRNRDGDKPEEDISDFRDTRVCKRFLCGLCPHDLFQNTKMDMGECEKLHLPKLKVAYDAEKSKPHSRDYGYENDLLRELERYVSDVEKKIARAQKRLEEQ-EGARPPTLADIESSKEVLEITAEIADLMQKAEDAGNEGEVDLSMELMAQVEVLKLKKNAVQANPSSSDSSGGASAPTPVVNEYDATQLHLMNVLPGNPLAMTNVNNKLRVCDMCGAFLSIFDSDRRLADHFGGKMHLGYMQIRKKIAEMKLAREA 267
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Match: A0A1V9YWW9_9STRA (RNA-binding protein Luc7-like 2-like isoform X1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWW9_9STRA) HSP 1 Score: 207 bits (527), Expect = 5.220e-59 Identity = 123/265 (46.42%), Postives = 173/265 (65.28%), Query Frame = 1
Query: 193 MDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKVQYEAEEAKGA-DYGYDKQLESILVNHIQEVDKKISRSQRRLEEGGQGAMAMDIGSLRKNEEIMKIEVQMSEIMKNAEAKGEEGEVDEAQELFQQAEALQQTKASLEAKALQQSITDAR---------AQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESILEER 957
MD+QRALLDELMG NR+ D + I DF+D RVCK YLCGLCPHDLF NT+ DLG C LH +LK+ YE + A+ DYGY+ +LE LV ++ +V+KKI+++ +RLEE GA + + N+E++++ +++E+M+ AE G EGEVD + +L Q E L+Q KA+++ S + + AQ + + NP A N QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH+G++ IR K++ + E R
Sbjct: 1 MDAQRALLDELMGRNRDGDRPQEDIRDFRDARVCKRYLCGLCPHDLFQNTRLDLGDCPKLHLPKLKLAYEEDRARTKRDYGYEAELERELVRYVTDVEKKIAKALKRLEEQD-GARVTTLIDVENNKEVLQLTAEIAELMQKAEDAGNEGEVDLSLKLMAQIEVLKQKKAAMQGVTPSASASTSGEAIISEYDIAQLNLMQVLPGNPLAMTNVN---QKLRVCDMCGAFLSIFDSDRRLADHFGGKLHLGYMQIRKKIQEMRESR 261 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig87.16291.1 >prot_C-linearis_contig87.16291.1 ID=prot_C-linearis_contig87.16291.1|Name=mRNA_C-linearis_contig87.16291.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=361bp MGKWRDSKPSQMDSQRALLDELMGVNRNLDNEEGVIDDFQDERVCKPYLCback to top mRNA from alignment at C-linearis_contig87:302879..309613- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig87.16291.1 ID=mRNA_C-linearis_contig87.16291.1|Name=mRNA_C-linearis_contig87.16291.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6735bp|location=Sequence derived from alignment at C-linearis_contig87:302879..309613- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig87:302879..309613- >mRNA_C-linearis_contig87.16291.1 ID=mRNA_C-linearis_contig87.16291.1|Name=mRNA_C-linearis_contig87.16291.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at C-linearis_contig87:302879..309613- (Chordaria linearis ClinC8C monoicous)back to top |