mRNA_C-linearis_contig87.16279.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16279.1
Unique NamemRNA_C-linearis_contig87.16279.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Match: G0S8T1_CHATD (Uncharacterized protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0S8T1_CHATD)

HSP 1 Score: 57.0 bits (136), Expect = 7.780e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:   11 TVVTPLGCFQDALDFRIFSVEQPSSLTEMSAAFCMASCDGQGFDYYGTQWARECWCGSGTP 193
            T  TPLGCF D+ + RIF     SS  +M+AA C  +C+G  +DY+GTQW+ EC+CGS  P
Sbjct:   36 TPYTPLGCFVDSGE-RIFPHRVISS-PDMTAAKCAENCEG--YDYFGTQWSSECYCGSVAP 92
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BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Match: B2ACF9_PODAN (Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 1 n=2 Tax=Podospora TaxID=5144 RepID=B2ACF9_PODAN)

HSP 1 Score: 50.1 bits (118), Expect = 2.200e-5
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 2 
Query:   20 TPLGCFQDA----LDFRIFSVEQPSSLTEMSAAFCMASCDGQGFDYYGTQWARECWCGSGTPAE 199
            T LGCF D     L  ++ S        +M+A  C A+C  +G+DY+GTQW+ EC+CGS  P +
Sbjct:   40 TVLGCFVDTGSRVLPSKVISTH------DMTAEKCAANC--RGYDYFGTQWSSECYCGSNKPTD 95
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BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Match: A0A067NYP8_PLEOS (Glycoside hydrolase family 71 protein n=1 Tax=Pleurotus ostreatus PC15 TaxID=1137138 RepID=A0A067NYP8_PLEOS)

HSP 1 Score: 49.7 bits (117), Expect = 3.010e-5
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:   29 GCFQDALDFRIFSVEQPSSLTEMSAAFCMASCDGQGFDYYGTQWARECWCGS 184
            GC+ D+ + RI +    +S T +S   C++SC  +GF Y GT++ +ECWCGS
Sbjct:  477 GCYVDSSNARILNGGSTTSST-LSVNSCISSCSARGFVYAGTEYGKECWCGS 527
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BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Match: A0A8H7DVE5_PLEOS (Uncharacterized protein n=1 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A8H7DVE5_PLEOS)

HSP 1 Score: 49.7 bits (117), Expect = 3.030e-5
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:   29 GCFQDALDFRIFSVEQPSSLTEMSAAFCMASCDGQGFDYYGTQWARECWCGS 184
            GC+ D+ + RI +    +S T +S   C++SC  +GF Y GT++ +ECWCGS
Sbjct:  734 GCYVDSSNARILNGGSTTSST-LSVNSCISSCSARGFVYAGTEYGKECWCGS 784
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BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Match: A0A139HLX6_9PEZI (Uncharacterized protein n=1 Tax=Pseudocercospora eumusae TaxID=321146 RepID=A0A139HLX6_9PEZI)

HSP 1 Score: 48.5 bits (114), Expect = 7.770e-5
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 2 
Query:   26 LGCFQDALDF--RIFSVEQPSSL---TEMSAAFCMASCDGQGFDYYGTQWARECWCGS 184
            LGC  D L+   R+ + +  +SL   T +  AFC A+  GQG+ YYGT++ REC+CG+
Sbjct:  509 LGCATDNLNGAGRVLTGDSTNSLGMNTAVCQAFCAAANKGQGYQYYGTEYGRECYCGN 566
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
G0S8T1_CHATD7.780e-850.82Uncharacterized protein n=1 Tax=Chaetomium thermop... [more]
B2ACF9_PODAN2.200e-540.63Podospora anserina S mat+ genomic DNA chromosome 3... [more]
A0A067NYP8_PLEOS3.010e-542.31Glycoside hydrolase family 71 protein n=1 Tax=Pleu... [more]
A0A8H7DVE5_PLEOS3.030e-542.31Uncharacterized protein n=1 Tax=Pleurotus ostreatu... [more]
A0A139HLX6_9PEZI7.770e-543.10Uncharacterized protein n=1 Tax=Pseudocercospora e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:125429..125902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930665.525991-CDS-C-linearis_contig87:125428..1255291622930665.525991-CDS-C-linearis_contig87:125428..125529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 125429..125529 -
1690881185.60982-CDS-C-linearis_contig87:125428..1255291690881185.60982-CDS-C-linearis_contig87:125428..125529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 125429..125529 -
1622930665.548181-CDS-C-linearis_contig87:125796..1259021622930665.548181-CDS-C-linearis_contig87:125796..125902Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 125797..125902 -
1690881185.620022-CDS-C-linearis_contig87:125796..1259021690881185.620022-CDS-C-linearis_contig87:125796..125902Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 125797..125902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16279.1prot_C-linearis_contig87.16279.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 125429..125902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16279.1

>prot_C-linearis_contig87.16279.1 ID=prot_C-linearis_contig87.16279.1|Name=mRNA_C-linearis_contig87.16279.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=69bp
AHSHSRYSPWVLPGRLGLSNLLRRAALLAHGNERRVLHGFLRRPRLRLLR
NSMGEGVLVRQRDAGRDL*
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mRNA from alignment at C-linearis_contig87:125429..125902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16279.1 ID=mRNA_C-linearis_contig87.16279.1|Name=mRNA_C-linearis_contig87.16279.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at C-linearis_contig87:125429..125902- (Chordaria linearis ClinC8C monoicous)
GCACACTCCCACAGTCGTTACTCCCCTTGGGTGCTTCCAGGACGCCTTGG
ACTTTCGAATCTTCTCCGTCGAGCAGCCCTCCTCGCTCACGGAAATGAGC
GCCGCGGTAAGGGAGAAAAGAGCGGCCTTGACCTACTGCTGTTGTAGGCT
TTGCCACAGTTTTGGGCCGAACACTGTTGTTTTGGCTGGCTTTTTCAAAA
GTTTAGCAAATAATTCCCTGTTCGCTTTGCTCTGCCTTGGTTCGCCCTTG
CGCCAATTCGCCGTTCGACACGTTTCTTGCGCCACTTTTGACTTGCGCCG
GTGGTGCCTCCGTTCGCCTTCTACCCGCTTGGACCCGTTACCTCCGCCTT
CCTTGGCGGGAAACCGTCGACAGTTCTGCATGGCTTCCTGCGACGGCCAA
GGCTTCGACTACTACGGAACTCAATGGGCGAGGGAGTGCTGGTGCGGCAG
CGGGACGCCGGCAGAGACCTATGA
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Coding sequence (CDS) from alignment at C-linearis_contig87:125429..125902-

>mRNA_C-linearis_contig87.16279.1 ID=mRNA_C-linearis_contig87.16279.1|Name=mRNA_C-linearis_contig87.16279.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at C-linearis_contig87:125429..125902- (Chordaria linearis ClinC8C monoicous)
GCACACTCCCACAGTCGTTACTCCCCTTGGGTGCTTCCAGGACGCCTTGG
ACTTTCGAATCTTCTCCGTCGAGCAGCCCTCCTCGCTCACGGAAATGAGC
GCCGCGGCACACTCCCACAGTCGTTACTCCCCTTGGGTGCTTCCAGGACG
CCTTGGACTTTCGAATCTTCTCCGTCGAGCAGCCCTCCTCGCTCACGGAA
ATGAGCGCCGCGTTCTGCATGGCTTCCTGCGACGGCCAAGGCTTCGACTA
CTACGGAACTCAATGGGCGAGGGAGTGCTGGTGCGGCAGCGGGACGCCGG
CAGAGACCTATGATTCTGCATGGCTTCCTGCGACGGCCAAGGCTTCGACT
ACTACGGAACTCAATGGGCGAGGGAGTGCTGGTGCGGCAGCGGGACGCCG
GCAGAGACCTATGA
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