mRNA_C-linearis_contig86.16252.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: D8LRE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE1_ECTSI) HSP 1 Score: 134 bits (336), Expect = 1.060e-36 Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query: 58 NRAGQGRIETSAGPVHFERGQGQQGRAWDCSLVLAKYLEKHPEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEG 297
NR GQG IET+AGP+HFERGQGQQGRAWDCSLVLAKYLE+ PEEVR + VLELGCG+GLPGVAAAV+GA EV LTDM G
Sbjct: 12 NRNGQGVIETAAGPIHFERGQGQQGRAWDCSLVLAKYLEQRPEEVRGKRVLELGCGVGLPGVAAAVVGATEVILTDMGYG 91
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A662YJ32_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ32_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.410e-24 Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 79 IETSAGP-VHFERGQGQQGRAWDCSLVLAKYLEKHPEEVRA----RGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNP---DVADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
IE S G V F+ QGQQ + WDC+LVLAK+L + V+ELGCG+G+PG+AAAVLGAEEV LTDM +P I+ I+ N +A+ + L+WG++ R++R V+LCSDL+YG+
Sbjct: 73 IELSPGKSVVFQEKQGQQAKVWDCALVLAKFLTNDAYFPHGFFENKRVVELGCGIGVPGLAAAVLGAEEVLLTDMPMAIPWIQANIDRNQTAGQIANTVCADALMWGEQEH------RDQRAFDVILCSDLVYGE 201
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A6A3LU63_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LU63_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.210e-24 Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPD---VADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
V F+ QGQQ + WDC+LVL+K+L P+ + V+ELGCG+G+PG+AAA LGA+EV LTDM +P I+ IE N ++D + L+WG+ A L V+LCSDL+YG+
Sbjct: 80 VVFQEKQGQQAKVWDCALVLSKFLTNDAYFPPDFFVNKRVIELGCGIGVPGLAAAALGAKEVVLTDMDVAIPWIKANIERNQTLGCISDNVRAEALMWGENAPLESLQ------FDVILCSDLVYGE 200
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: H3H395_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H395_PHYRM) HSP 1 Score: 99.4 bits (246), Expect = 6.840e-23 Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH---PEEVRA-RGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPD---VADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
V F+ QGQQ + WDC+LVLAK+L P++ + V+ELGCG+G+PG+AAA LGA++V LTDM+ +P I+ IELN ++ + L+WG+ A V+LCSDL+YG+
Sbjct: 15 VVFQEKQGQQAKVWDCALVLAKFLANDAYFPQDFFLNKRVIELGCGVGVPGLAAAALGAKKVVLTDMSVAIPWIQANIELNQTRNYISSDVRAESLMWGENEAL------EMHQFDVILCSDLVYGE 135
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: W4H380_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H380_9STRA) HSP 1 Score: 100 bits (249), Expect = 7.400e-23 Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPDVADR--LEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
VHF+ GQQ R WDC+LV++K+L P + ++ELGCG+G+PG++AA+LGA++V LTDM + +P I+ I N A+ + L+WG +A + P V+LCSDL+YGD
Sbjct: 71 VHFQEELGQQRRVWDCALVVSKFLANPLYFPPGSFNGKQIIELGCGIGVPGLSAALLGAKQVVLTDMAQAIPWIDINIAKNTFDANMTTVSSMPLMWGPDATTS-----IAGPFDVILCSDLIYGD 191
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A6H5KNW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW3_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.620e-22 Identity = 50/63 (79.37%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 286 MTEGLPAIERTIELNPDVADRLEGRVLLWGDEAAAAQLLARNR--RPVSVVLCSDLLYGDGPP 468
M GLPAIERTIELNP VADRL GRVLLWGDE AA QLLA R PVSV+LCSDLLYGDG P
Sbjct: 1 MAIGLPAIERTIELNPGVADRLSGRVLLWGDEEAAVQLLATGRYHHPVSVILCSDLLYGDGAP 63
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A485L749_9STRA (Aste57867_17165 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L749_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.090e-22 Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPDVADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
V F+ GQQ R WDC+LVL+K+L P+ + V+ELGCG+G+PG++AA+LGA++V LTDM +P I+ I N + D + L+WG +AA P V+LCSDL+YGD
Sbjct: 71 VLFQEELGQQRRVWDCALVLSKFLTHPDYFAPDFFHGKHVIELGCGIGVPGLSAALLGAKQVLLTDMAIAVPWIQVNITKNR-LDDTVRAAGLMWGPQAACIT----GDTPFDVILCSDLIYGD 189
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A6G0XV44_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV44_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.910e-22 Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPDVADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
V F+ GQQ R WDC+LVL+K+L P + + V+ELGCG+G+PG++AA LGA++V LTDM +P I+ I N +++D +E L+WG ++ + P ++LCSDL+YGD
Sbjct: 72 VVFQEELGQQRRVWDCALVLSKFLTHSEYFPPGFFQGKRVIELGCGIGVPGLSAARLGAKQVVLTDMDLAVPWIQVNIAKN-NLSDTVEAMGLMWGPDSCT-----KAGGPFDIILCSDLIYGD 189
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: G5AF57_PHYSP (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AF57_PHYSP) HSP 1 Score: 98.2 bits (243), Expect = 2.470e-21 Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPD---VADRLEGRVLLWGDEAAAAQLLARNRRPVSVVLCSDLLYGD 459
V F+ QGQQ + WDC+LVL+K+L P+ + V+ELGCG+G+PG+AAA LGA+EV LTDM +P I+ IE N ++ + L+WG+ A V+LCSDL+YG+
Sbjct: 76 VVFQEKQGQQAKVWDCALVLSKFLTNDAYFAPDFFVNKHVIELGCGIGVPGLAAAALGAKEVMLTDMDMAIPWIQVNIERNQTLGCISGDVRAEALMWGENAPL------ESHQFDVILCSDLVYGE 196
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Match: A0A0W8CG62_PHYNI (Lysine methyltransferase METTL21D protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CG62_PHYNI) HSP 1 Score: 96.7 bits (239), Expect = 3.060e-21 Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 100 VHFERGQGQQGRAWDCSLVLAKYLEKH----PEEVRARGVLELGCGLGLPGVAAAVLGAEEVTLTDMTEGLPAIERTIELNPD---VADRLEGRVLLWG--DEAAAAQLLARNRRPVSVVLCSDLLYG 456
V F+ QGQQ + WDC+LVLAK+L P + V+ELGCG+G+PG+AAA LGA+EV LTDM +P I+ +E N ++ + + L+WG DE + Q V+LCSDL+YG
Sbjct: 80 VVFQEKQGQQAKVWDCALVLAKFLSNDAYFSPSFFINKRVIELGCGIGVPGLAAAALGAKEVVLTDMPMAVPWIQVNVERNQKLGCISGNVRAQGLMWGEGDELESHQF--------DVILCSDLVYG 199 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16252.1 >prot_C-linearis_contig86.16252.1 ID=prot_C-linearis_contig86.16252.1|Name=mRNA_C-linearis_contig86.16252.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=162bp MFWQDAPRGKAPLRTLEINRAGQGRIETSAGPVHFERGQGQQGRAWDCSLback to top mRNA from alignment at C-linearis_contig86:637857..641550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16252.1 ID=mRNA_C-linearis_contig86.16252.1|Name=mRNA_C-linearis_contig86.16252.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3694bp|location=Sequence derived from alignment at C-linearis_contig86:637857..641550+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:637857..641550+ >mRNA_C-linearis_contig86.16252.1 ID=mRNA_C-linearis_contig86.16252.1|Name=mRNA_C-linearis_contig86.16252.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at C-linearis_contig86:637857..641550+ (Chordaria linearis ClinC8C monoicous)back to top |