mRNA_C-linearis_contig86.16250.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16250.1
Unique NamemRNA_C-linearis_contig86.16250.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6H5KL59_9PHAE (Trimethylguanosine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL59_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 7.970e-118
Identity = 182/218 (83.49%), Postives = 198/218 (90.83%), Query Frame = 2
Query:    5 TGYRRVYKGSEHGKVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLIA 658
             G R++YKGSEHGKVKFLFPNM+PK RNRL+FDEESLWSIT QNTADEM+ IALLLP V+ASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRF+LLKGNVKK+IA+SAHK KT+RFFN +FL VLE E+G I  KRP+VFIDPPWGGE YKKKGLVDL LSD PMV+VC RAA AGARHVLLKVPTNFNLRGFR+ VGPAGRVS HDLRKMLL+A
Sbjct:  343 AGRRKIYKGSEHGKVKFLFPNMSPKRRNRLRFDEESLWSITDQNTADEMTKIALLLPGVSASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFDLLKGNVKKAIARSAHKEKTVRFFNADFLQVLETERGGITEKRPIVFIDPPWGGEEYKKKGLVDLSLSDTPMVDVCGRAAKAGARHVLLKVPTNFNLRGFRNAVGPAGRVSSHDLRKMLLVA 560          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: D7FZS8_ECTSI (Trimethylguanosine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS8_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 5.100e-88
Identity = 138/178 (77.53%), Postives = 151/178 (84.83%), Query Frame = 2
Query:   68 MTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKG---------LVDLFLSDKPMVEVCRRAANAGARHVLLKVPTN 574
            M+PK RNRL+FDEESLWSIT QNTADEM+ IALLLP V+ASTAIVDGTACVGGNAISF SAFDEVWAVEIDPDRF+LLKGNVKK+IA+SAHK KT+RFFN +FL VLE E+G I  KRP+VFIDPPWGGE YKKKG         LVDL LSD PMV+VC RAA AGARHVLLKV T+
Sbjct:    1 MSPKRRNRLRFDEESLWSITDQNTADEMTKIALLLPGVSASTAIVDGTACVGGNAISFVSAFDEVWAVEIDPDRFDLLKGNVKKAIARSAHKEKTVRFFNADFLRVLETERGGIAEKRPIVFIDPPWGGEEYKKKGXXXXXXXXGLVDLSLSDTPMVDVCGRAAKAGARHVLLKVTTS 178          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A835YTB6_9STRA (Trimethylguanosine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.240e-26
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 2
Query:   20 VYKGSEHGKVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFAS--AFDEVWAVEIDPDRFELLKGNVK 316
            +Y GS HGKV FLF  M  + R+RLQFD  SL+S+T Q TAD+++ I L LP V  +T I+DGTACVGGN ISFAS   F +VWAVE+DP R++LLK NVK
Sbjct:  844 IYTGSTHGKVNFLFAKMDAQRRHRLQFDATSLYSVTDQRTADQITEILLGLPGVDTATPIIDGTACVGGNVISFASHGQFQQVWAVELDPTRYKLLKHNVK 944          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6C0CTX7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTX7_9ZZZZ)

HSP 1 Score: 112 bits (280), Expect = 2.480e-26
Identity = 66/184 (35.87%), Postives = 108/184 (58.70%), Query Frame = 2
Query:   44 KVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMS-NIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGF 592
            K  FLF  ++ + R +L+ D+E+ +S+T Q TAD +S +I  ++P++     I D TAC+GGN  SF+  F +V A+E+D  R++ L+ N+K        +T  +  +  + L    +        + ++FIDPPWGG  YK K +VDLF+S+  + EVC    +  ++++ LKVPTNFN + F
Sbjct:    4 KKDFLFRFISIEKRRQLKLDDEAFYSVTDQYTADRISKDILRVIPDL---QIITDATACIGGNTYSFSKYFHKVNAIEVDFLRYQYLQHNIK------VLETSNVDIYLSDLLIACHR------LYQDLIFIDPPWGGPEYKSKEVVDLFISEVELSEVCEHIKDT-SKYIALKVPTNFNEKQF 171          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A3F2RVX0_9STRA (Trimethylguanosine synthase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVX0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.780e-24
Identity = 81/232 (34.91%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL----------------------------PEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
            F F N+  ++RN+LQ DE + +S+T    A ++S   L L                              V     + DGTACVGGN +SF   F  V AVE D  R ++L+ N++   K+ AK  H +         +LDV+      +G ++ VVF+DPPWGG  YK    VDLFL   P+ E+C R     A+ V+LKVP+NF+   F   V P   V   DL+KM L+
Sbjct:   51 FFFRNLDFEIRNQLQVDEVAEFSVTDFEMATKISEAVLGLFDPPKDDDGLEDGNEKHERGEELSPSPVERVKYPLVVTDGTACVGGNVLSFCDFFTHVNAVENDATRVQMLQHNLQVLSKTNAKCIHAS---------YLDVM------LGLQQDVVFLDPPWGGPEYKDLERVDLFLGGVPLHEICTRLQGT-AKCVVLKVPSNFDDEKFAQFV-PGKVVIRRDLKKMHLV 265          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A3M6V8A2_9STRA (Trimethylguanosine synthase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8A2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.610e-23
Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 2
Query:   53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIAL----LLPEVTASTA---------------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNV---KKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKM 646
            F F N+  +LRN+LQ DE + +S+T    A ++S   L     L E T S +                     + DGTAC+GGN +SF   F  V A+E +  R ++L+ N+   KK+  K  H          N+LDV+      +  ++ VVF+DPPWGG  YK    VDLFL D P+ E+C R  ++  + ++LKVP+NF+   F   V P   +   DL+KM
Sbjct:  325 FFFRNLDYELRNQLQVDEVAEFSVTDFEMATKISQAVLDLFAPLKEDTTSESGNEDHEDGCTAIQERKKYPLVVTDGTACIGGNVLSFCDFFMHVNAIENNATRVQMLRHNLQVLKKTNVKCIHA---------NYLDVM------LELQQDVVFLDPPWGGPEYKDLNKVDLFLGDVPLHEICTRLQSS-TKCIILKVPSNFDDAKFSQQV-PGNVIIRRDLKKM 533          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6C0IY53_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IY53_9ZZZZ)

HSP 1 Score: 104 bits (259), Expect = 3.000e-23
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 2
Query:   47 VKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSN-IALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARH-----VLLKVPTNFN 580
            +K +FP       N+L++D+E LWSI+  N ADE+S  I L          I+D TA +GGN ISFAS F++V +VE D +RF+LLK N++       +    +   N +FL +LE+    I  +  VVF+DPPWGG  YK    +++ +S+  + +VC    N          ++ K+P NFN
Sbjct:    8 IKKIFPPDNCNNINKLKYDQEGLWSISRPNDADEISKKIKLFEKTGIIINTILDSTAGLGGNTISFASYFNKVISVEYDKERFKLLKSNIEN------YTYNNIVLHNFDFLQLLEQ----INEQIDVVFVDPPWGGPNYKFDDNLNIEISNTSLSDVCVLLDNYSFNENKIKIIVFKLPYNFN 181          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A329S940_9STRA (Trimethylguanosine synthase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S940_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.170e-23
Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSN--IALLLPEVTASTA-----------------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
            F F N+  +LRN+LQ DE + +S+T    A ++S   + L +P    +T+                       + DGTACVGGN +SF   F  V A+E D  R  +L+ N++   K+ AK  H          N+LDV+      +  ++ VVF+DPPWGG  YK    VDLFL   P+ ++C R   + A+ ++LKVP+NF+   F   V P   V   DL+KM L+
Sbjct:  255 FFFRNLDYELRNQLQVDEVAEFSVTDFEMATKISQFILDLFVPPKDDTTSESGIEDQDDGTTTIEERKKYPLVVTDGTACVGGNVLSFCDFFTHVNAIENDSTRVRMLRHNLQVLQKTNAKCIHA---------NYLDVM------LELEQDVVFLDPPWGGPEYKDLDKVDLFLGGSPLHDICMRLQGS-AKCIVLKVPSNFDDTKFSQHV-PGKVVIRRDLKKMHLV 466          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: W2QLX3_PHYPN (Trimethylguanosine synthase n=10 Tax=Phytophthora TaxID=4783 RepID=W2QLX3_PHYPN)

HSP 1 Score: 108 bits (269), Expect = 9.370e-23
Identity = 81/229 (35.37%), Postives = 115/229 (50.22%), Query Frame = 2
Query:   53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL-----------------PEVTAST--------AIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNV---KKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
            F F N+  +LR++L+ DE + +S+T    A ++S   L L                  + T +T         + DGTACVGGN +SF   F  V AVE D  R E+L+ N+   +K+ A   H          N+LDV+      +  K+ VVF+DPPWGG  YK    VDLFL   P+ E+C R  +  A+ ++LKVP+NF+   F   V P   V   DL+KM L+
Sbjct:  338 FFFRNLDYELRSQLRVDEVAEFSVTDFEMATKISQFVLELFVPTRDDMTSECDNEDRDDGTTTTEERKKYPLVVTDGTACVGGNVLSFCDFFTHVNAVENDSTRVEMLRHNLHVLQKTNANCIHA---------NYLDVM------LELKQDVVFLDPPWGGPEYKDLDKVDLFLGGLPLHEICTRL-HGSAKCIVLKVPSNFDNAKFSQLV-PGKVVIRRDLKKMHLV 549          
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A484E7N2_BRELC (Trimethylguanosine synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7N2_BRELC)

HSP 1 Score: 107 bits (267), Expect = 1.590e-22
Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL--------PEVTASTA-----------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
            F F N+  +LRN+LQ D+ + +S+T    A ++S++ L L           +  TA                 + DGTACVGGN +SF   F  V A+E D  R ++L+ N++   K+  K  H          N+LDV+      +  K+ VVF+DPPWGG  YK    VDLFL  +P+ E+C R   +  + ++LKVP+NF+   F   V P   V   DL+KM L+
Sbjct:  316 FFFRNLAYELRNQLQVDKVAEFSVTDFEMATKISHVVLNLFVPFQGGIVAESGDTAHEDSNMINSERAKHPLIVTDGTACVGGNVLSFCDFFAHVNAIENDFSRVQMLQHNLQVLQKTNVKCIHA---------NYLDVM------LQLKQDVVFLDPPWGGPEYKDLERVDLFLGGQPLHEICSRLQGS-TKCIVLKVPSNFDEVKFSQNV-PGKVVIRRDLKKMHLV 527          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL59_9PHAE7.970e-11883.49Trimethylguanosine synthase n=1 Tax=Ectocarpus sp.... [more]
D7FZS8_ECTSI5.100e-8877.53Trimethylguanosine synthase n=1 Tax=Ectocarpus sil... [more]
A0A835YTB6_9STRA2.240e-2660.40Trimethylguanosine synthase n=1 Tax=Tribonema minu... [more]
A0A6C0CTX7_9ZZZZ2.480e-2635.87Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3F2RVX0_9STRA3.780e-2434.91Trimethylguanosine synthase n=3 Tax=Phytophthora k... [more]
A0A3M6V8A2_9STRA2.610e-2334.51Trimethylguanosine synthase n=2 Tax=Peronospora ef... [more]
A0A6C0IY53_9ZZZZ3.000e-2336.41Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A329S940_9STRA3.170e-2334.50Trimethylguanosine synthase n=1 Tax=Phytophthora c... [more]
W2QLX3_PHYPN9.370e-2335.37Trimethylguanosine synthase n=10 Tax=Phytophthora ... [more]
A0A484E7N2_BRELC1.590e-2234.50Trimethylguanosine synthase n=1 Tax=Bremia lactuca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:611276..614655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.0
Seed ortholog evalue1.1e-69
Seed eggNOG ortholog2880.D7FZS8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA cap guanine-N2 methyltransferase
EggNOG OGs2D0B1@1,2SDHB@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-21_003020.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size891
Cds size765
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930663.5326357-UTR-C-linearis_contig86:611275..6113211622930663.5326357-UTR-C-linearis_contig86:611275..611321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 611276..611321 +
1690881184.6137738-UTR-C-linearis_contig86:611275..6113211690881184.6137738-UTR-C-linearis_contig86:611275..611321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 611276..611321 +
1622930663.5480351-UTR-C-linearis_contig86:612119..6121401622930663.5480351-UTR-C-linearis_contig86:612119..612140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 612120..612140 +
1690881184.624826-UTR-C-linearis_contig86:612119..6121401690881184.624826-UTR-C-linearis_contig86:612119..612140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 612120..612140 +
1622930663.6757722-UTR-C-linearis_contig86:614596..6146551622930663.6757722-UTR-C-linearis_contig86:614596..614655Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 614597..614655 +
1690881184.7105868-UTR-C-linearis_contig86:614596..6146551690881184.7105868-UTR-C-linearis_contig86:614596..614655Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 614597..614655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930663.5654497-CDS-C-linearis_contig86:612140..6122211622930663.5654497-CDS-C-linearis_contig86:612140..612221Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 612141..612221 +
1690881184.6342294-CDS-C-linearis_contig86:612140..6122211690881184.6342294-CDS-C-linearis_contig86:612140..612221Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 612141..612221 +
1622930663.5818748-CDS-C-linearis_contig86:612975..6130911622930663.5818748-CDS-C-linearis_contig86:612975..613091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 612976..613091 +
1690881184.6443915-CDS-C-linearis_contig86:612975..6130911690881184.6443915-CDS-C-linearis_contig86:612975..613091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 612976..613091 +
1622930663.5941117-CDS-C-linearis_contig86:613502..6137101622930663.5941117-CDS-C-linearis_contig86:613502..613710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 613503..613710 +
1690881184.655446-CDS-C-linearis_contig86:613502..6137101690881184.655446-CDS-C-linearis_contig86:613502..613710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 613503..613710 +
1622930663.6068797-CDS-C-linearis_contig86:613875..6139651622930663.6068797-CDS-C-linearis_contig86:613875..613965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 613876..613965 +
1690881184.6670074-CDS-C-linearis_contig86:613875..6139651690881184.6670074-CDS-C-linearis_contig86:613875..613965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 613876..613965 +
1622930663.6241698-CDS-C-linearis_contig86:614309..6144031622930663.6241698-CDS-C-linearis_contig86:614309..614403Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 614310..614403 +
1690881184.678077-CDS-C-linearis_contig86:614309..6144031690881184.678077-CDS-C-linearis_contig86:614309..614403Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 614310..614403 +
1622930663.6470108-CDS-C-linearis_contig86:614420..6145961622930663.6470108-CDS-C-linearis_contig86:614420..614596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 614421..614596 +
1690881184.6872668-CDS-C-linearis_contig86:614420..6145961690881184.6872668-CDS-C-linearis_contig86:614420..614596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 614421..614596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16250.1prot_C-linearis_contig86.16250.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 612141..614596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16250.1

>prot_C-linearis_contig86.16250.1 ID=prot_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTAC
VGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFN
DNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEV
CRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLIAPPL
LLLLLLLVLLRLPVLLPVPVLRPGLAEEASLGIVRRRQEPERGRSCKRSC
CGRW*
back to top

mRNA from alignment at C-linearis_contig86:611276..614655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16250.1 ID=mRNA_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3380bp|location=Sequence derived from alignment at C-linearis_contig86:611276..614655+ (Chordaria linearis ClinC8C monoicous)
CGAGACCGGGTATCGCAGGGTGTACAAGGGTTCCGAGCACGGGAAGGTGG GTCGTCGGCACGTCACGTCCCTGTCCTGTGTACCTCCGAGAAGCGGGTGC CGTGCACCCGTCTAGTGTTGGATCAGTACGGACAAAGGGGGGTACTGAGT GGAGAGATCGGGGTGGTTTTCAATGTGAAGACAACAACAACAACAACAAC AACAACAACAAGTCCGTCTTTCATCACGACGACGCAAATACTTCGTATGT AGCTTTCCAACACCCGTGTGTACGTCTTGCTCTCCTTCCTCCCATGCTCG TGTCGGCAAACGACGTTTTTATTTTATTTTATTTTCGTCTTCACATTTAT TTCCAGAGTTCGCAGGGGCACCTTGCCATGCGGGGAATCTTACCAGAACA TCTGAACCGTGGTCACACAGAAGGCTCCTCTCCCTGAGGCCCCCACCCAC CTTCTGCGGTGCTTGCCTGGTAATTTTTAACGCGAGAGAGTTTCAGCCGT CTCTCCCTCAAGTGTACACACGAACTAAGCGCTTTCCACTGACAGGAACG AAAGCGAGAGGAAAAACTCACTTTGTGTGAGAAAAAGTCGCTTGCGCCGG GATTCGAACCCGTGAACCTGCATGCTAGATGGTTGTGGTGAGACCACTAG ACCACCGGGGCGACCGGCTTACGTGTCGTACATCGTACATCGTACATCGA GGTTTTCTTCCTTCTTCCTTCCTTGTGTAACAAGACTTGATCGAGCCTTG GCGAAGGCGAAACCACGCGATGATCCTGCCGCCGCCTTCTTTCCGCCGCC CGCCTAGATTACCCGCCTTCCTCTGCCATGCCCCGCCCTCGCAGGTGAAG TTTTTGTTCCCCAACATGACCCCCAAGCTGCGAAACCGATTGCAGTTCGA CGAGGAATCTCTGTGGAGCATCACCGGCCAGAATACCGCAGACGAGGTAG GTGGTGGGCGAGGTAGTTGCGGGCGGTACGTGCACGTACATAGGTGGAGG CACGCCGCGTTCGGTAGATGGTTTGCGGGGTCGGTCGGGTCCAGGGACAC CACTCCGGCGCGCGCGTGCGCAGTCGGGGGGGGGGGTCTTTAGGGAGCCG ATGCCGCTTGTTGGTGGGTTGTTGTTGGTGATGTTGTTGCTTGGGCGTTG GGGGGTTCTTGATGTAGAGTACGACGAAGACGTCCTCGAGAGCTCTCTCC CAAGAGGATGGTGTTGGTGATGTTGTTGCTTGGGCGTTGGGGGGTTCTTG ATGTAGAGTACGACGAAGACGTCCTCGAGAGCTCTCTCCCAAGAGGATGG TGTTGGTGATGTTGTTGCTTGGGCGTTGGGGGGTTCTTGATGTAGAGTAC GACGAAGACGTCCTCGAGAGCTCTCTCCCAAGAGAATGGTGGTGGCGGTG GTGGCGTCTTGGAAGAGACTGGACACCGCCATGATGTCCATAAGATATGC GATTGCCTAGATAACGTTCTAGACGGCCGAAGCGTTGACTCCCCCTCCCC TCCTCGCCTCAGCGTTTCTTCCCGTGGCTTGTGTTTGTGGATGTGAACGC TTCGCTATTTTTTCTTTGTTCGCGTGTTTTTTTTTTTAATACAGCCAGCA TGGAGTGAAGCAGTGAAGCATTATCGTTACACTTGCTGGTGTCATATTAT ATTCTCCCTGCCTATACGTGGCCGTTTGTTTACTGGTGTTTTTTTGTCAG ATGAGTAACATCGCCCTCCTCCTGCCGGAGGTGACGGCTTCTACGGCGAT CGTGGACGGAACGGCGTGTGTGGGCGGCAACGCCATTTCGTTCGCCTCGG CTTTCGATGAAGTCTGGTGAGAAACAAAAGACGTGCATGAAAGAGAGGAG CCTAAATAGCGTAGTGTAGCGTAGCGTAGTGTAGCGTGGTGTAGCGTAGT CTACCGTAGTCTAGCGTAGTGTAGCGTAGGGTAGTGTAGCTGCTATTTTT TGTGTTCTTCGGACGTAGCCGTAAAAAGGTAGGTGTACGAAGCAGCGGAA ACACAAGCACGCCCAACAGCTCGGGGAGGTATCTACATACGAAGATGCTG CGTTTCGGGGGAGGAACACTTGTGGTCTTCGCACAACGGATCGTTCAGGG TTTTTGACGCGGCATTCGGTAGTTGGCGTGGGAAAATCGGTGACGTTTTG GCCTCTTCGCGTCTTTCGGGGTCGAGAAACTACGACCGTCGTTGCTCTTT TTCGCAACCTCTTCACAACCACACCAGGGCGGTGGAGATCGACCCGGACA GGTTCGAGCTCCTCAAGGGGAACGTGAAGAAATCGATCGCGAAGTCGGCG CACAAGACCAAGACATTACGGTTTTTCAATGACAACTTCCTGGACGTGCT GGAGAAGGAGAAGGGGGCGATCGGGGCGAAGCGTCCGGTCGTGTTTATCG ACCCGCCGTGGGGGGGAGAGGCCTACAAGAAGAAGGTGCGTGCATACCAC GACCGCACCGCAAGTTTGTGGGGGCATCGGGTAGACAAGGCCGACGATAC ACACTCTGGAGCATTGGTGTAATGAATGAAGCCTTGTGGCGGTATTTTCC TGTTTTATCCTCGTTTTTTTTCTGAATTCTTTTTCTGTTGTCGCTCGCAG GGCCTGGTGGACTTGTTTCTGTCCGACAAGCCGATGGTGGAGGTGTGCCG TCGCGCGGCGAACGCGGGAGCGAGACACGTCCTCCTCAAGGTGTGGTTAA TGACATGTATGCGCCATGTTATACAACAGGGTCAAAAATATAGGGGCGTT GGAGGTGCGCGAGGTCGCAGGACGAGGGCGCGAGGCACATGCACCTTTGT GTGAACCAAAAGAGCATTTTTTGGTTGTTTGTTCGTCATGTTTCGTTTTC ATGTGTCGAACTGATTTTTTTTGCCGCCACGCGTGCGCAAGCAAGACTTT CGCCGGGGTGTGAGGCACACATAACTTTCATCACCAACAAGGGACTGTCA ACAACAACAACAACAACAACGACGAGAAATGCAACTCGCCCTACCCCCCC CCCTATTACTGTACGCGCTCGTTTCGCTCCCAAGGTCCCGACGAACTTCA ACCTCCGAGGCTTCCGCGACGGCGTCGGTCCCGCGGGACGCGTCTCACTC CATGACCTACGCAAGATGCTGCTCATCGCCGTCGACTACGACCCCCCCCC CCCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTGCGCCTCCCCGTCCT TCTCCCCGTCCCCGTCCTCCGGCCCGGCCTCGCCGAAGAGGCGTCACTCG GCATCGTCCGTCGACGGCAAGAACCGGAGCGCGGCCGCTCCTGTAAACGC TCCTGTTGCGGACGGTGGTGATGGCGGCGGCGGCGGCGGCGGCGGCGGCG GCGGCGATGGGTCCGATGAGGCAGCGGGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig86:611276..614655+

>mRNA_C-linearis_contig86.16250.1 ID=mRNA_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig86:611276..614655+ (Chordaria linearis ClinC8C monoicous)
ATGACCCCCAAGCTGCGAAACCGATTGCAGTTCGACGAGGAATCTCTGTG
GAGCATCACCGGCCAGAATACCGCAGACGAGATGACCCCCAAGCTGCGAA
ACCGATTGCAGTTCGACGAGGAATCTCTGTGGAGCATCACCGGCCAGAAT
ACCGCAGACGAGATGAGTAACATCGCCCTCCTCCTGCCGGAGGTGACGGC
TTCTACGGCGATCGTGGACGGAACGGCGTGTGTGGGCGGCAACGCCATTT
CGTTCGCCTCGGCTTTCGATGAAGTCTGATGAGTAACATCGCCCTCCTCC
TGCCGGAGGTGACGGCTTCTACGGCGATCGTGGACGGAACGGCGTGTGTG
GGCGGCAACGCCATTTCGTTCGCCTCGGCTTTCGATGAAGTCTGGGCGGT
GGAGATCGACCCGGACAGGTTCGAGCTCCTCAAGGGGAACGTGAAGAAAT
CGATCGCGAAGTCGGCGCACAAGACCAAGACATTACGGTTTTTCAATGAC
AACTTCCTGGACGTGCTGGAGAAGGAGAAGGGGGCGATCGGGGCGAAGCG
TCCGGTCGTGTTTATCGACCCGCCGTGGGGGGGAGAGGCCTACAAGAAGA
AGGGCGGTGGAGATCGACCCGGACAGGTTCGAGCTCCTCAAGGGGAACGT
GAAGAAATCGATCGCGAAGTCGGCGCACAAGACCAAGACATTACGGTTTT
TCAATGACAACTTCCTGGACGTGCTGGAGAAGGAGAAGGGGGCGATCGGG
GCGAAGCGTCCGGTCGTGTTTATCGACCCGCCGTGGGGGGGAGAGGCCTA
CAAGAAGAAGGGCCTGGTGGACTTGTTTCTGTCCGACAAGCCGATGGTGG
AGGTGTGCCGTCGCGCGGCGAACGCGGGAGCGAGACACGTCCTCCTCAAG
GGCCTGGTGGACTTGTTTCTGTCCGACAAGCCGATGGTGGAGGTGTGCCG
TCGCGCGGCGAACGCGGGAGCGAGACACGTCCTCCTCAAGGTCCCGACGA
ACTTCAACCTCCGAGGCTTCCGCGACGGCGTCGGTCCCGCGGGACGCGTC
TCACTCCATGACCTACGCAAGATGCTGCTCATCGGTCCCGACGAACTTCA
ACCTCCGAGGCTTCCGCGACGGCGTCGGTCCCGCGGGACGCGTCTCACTC
CATGACCTACGCAAGATGCTGCTCATCGCCCCCCCCCTCCTCCTCCTCCT
CCTCCTCCTCGTCCTCCTGCGCCTCCCCGTCCTTCTCCCCGTCCCCGTCC
TCCGGCCCGGCCTCGCCGAAGAGGCGTCACTCGGCATCGTCCGTCGACGG
CAAGAACCGGAGCGCGGCCGCTCCTGTAAACGCTCCTGTTGCGGACGGTG
GTGACCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTGCGCCT
CCCCGTCCTTCTCCCCGTCCCCGTCCTCCGGCCCGGCCTCGCCGAAGAGG
CGTCACTCGGCATCGTCCGTCGACGGCAAGAACCGGAGCGCGGCCGCTCC
TGTAAACGCTCCTGTTGCGGACGGTGGTGA
back to top