mRNA_C-linearis_contig86.16250.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6H5KL59_9PHAE (Trimethylguanosine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL59_9PHAE) HSP 1 Score: 369 bits (948), Expect = 7.970e-118 Identity = 182/218 (83.49%), Postives = 198/218 (90.83%), Query Frame = 2
Query: 5 TGYRRVYKGSEHGKVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLIA 658
G R++YKGSEHGKVKFLFPNM+PK RNRL+FDEESLWSIT QNTADEM+ IALLLP V+ASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRF+LLKGNVKK+IA+SAHK KT+RFFN +FL VLE E+G I KRP+VFIDPPWGGE YKKKGLVDL LSD PMV+VC RAA AGARHVLLKVPTNFNLRGFR+ VGPAGRVS HDLRKMLL+A
Sbjct: 343 AGRRKIYKGSEHGKVKFLFPNMSPKRRNRLRFDEESLWSITDQNTADEMTKIALLLPGVSASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFDLLKGNVKKAIARSAHKEKTVRFFNADFLQVLETERGGITEKRPIVFIDPPWGGEEYKKKGLVDLSLSDTPMVDVCGRAAKAGARHVLLKVPTNFNLRGFRNAVGPAGRVSSHDLRKMLLVA 560
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: D7FZS8_ECTSI (Trimethylguanosine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS8_ECTSI) HSP 1 Score: 269 bits (688), Expect = 5.100e-88 Identity = 138/178 (77.53%), Postives = 151/178 (84.83%), Query Frame = 2
Query: 68 MTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKG---------LVDLFLSDKPMVEVCRRAANAGARHVLLKVPTN 574
M+PK RNRL+FDEESLWSIT QNTADEM+ IALLLP V+ASTAIVDGTACVGGNAISF SAFDEVWAVEIDPDRF+LLKGNVKK+IA+SAHK KT+RFFN +FL VLE E+G I KRP+VFIDPPWGGE YKKKG LVDL LSD PMV+VC RAA AGARHVLLKV T+
Sbjct: 1 MSPKRRNRLRFDEESLWSITDQNTADEMTKIALLLPGVSASTAIVDGTACVGGNAISFVSAFDEVWAVEIDPDRFDLLKGNVKKAIARSAHKEKTVRFFNADFLRVLETERGGIAEKRPIVFIDPPWGGEEYKKKGXXXXXXXXGLVDLSLSDTPMVDVCGRAAKAGARHVLLKVTTS 178
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A835YTB6_9STRA (Trimethylguanosine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB6_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.240e-26 Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 2
Query: 20 VYKGSEHGKVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACVGGNAISFAS--AFDEVWAVEIDPDRFELLKGNVK 316
+Y GS HGKV FLF M + R+RLQFD SL+S+T Q TAD+++ I L LP V +T I+DGTACVGGN ISFAS F +VWAVE+DP R++LLK NVK
Sbjct: 844 IYTGSTHGKVNFLFAKMDAQRRHRLQFDATSLYSVTDQRTADQITEILLGLPGVDTATPIIDGTACVGGNVISFASHGQFQQVWAVELDPTRYKLLKHNVK 944
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6C0CTX7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTX7_9ZZZZ) HSP 1 Score: 112 bits (280), Expect = 2.480e-26 Identity = 66/184 (35.87%), Postives = 108/184 (58.70%), Query Frame = 2
Query: 44 KVKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMS-NIALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGF 592
K FLF ++ + R +L+ D+E+ +S+T Q TAD +S +I ++P++ I D TAC+GGN SF+ F +V A+E+D R++ L+ N+K +T + + + L + + ++FIDPPWGG YK K +VDLF+S+ + EVC + ++++ LKVPTNFN + F
Sbjct: 4 KKDFLFRFISIEKRRQLKLDDEAFYSVTDQYTADRISKDILRVIPDL---QIITDATACIGGNTYSFSKYFHKVNAIEVDFLRYQYLQHNIK------VLETSNVDIYLSDLLIACHR------LYQDLIFIDPPWGGPEYKSKEVVDLFISEVELSEVCEHIKDT-SKYIALKVPTNFNEKQF 171
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A3F2RVX0_9STRA (Trimethylguanosine synthase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVX0_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.780e-24 Identity = 81/232 (34.91%), Postives = 113/232 (48.71%), Query Frame = 2
Query: 53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL----------------------------PEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
F F N+ ++RN+LQ DE + +S+T A ++S L L V + DGTACVGGN +SF F V AVE D R ++L+ N++ K+ AK H + +LDV+ +G ++ VVF+DPPWGG YK VDLFL P+ E+C R A+ V+LKVP+NF+ F V P V DL+KM L+
Sbjct: 51 FFFRNLDFEIRNQLQVDEVAEFSVTDFEMATKISEAVLGLFDPPKDDDGLEDGNEKHERGEELSPSPVERVKYPLVVTDGTACVGGNVLSFCDFFTHVNAVENDATRVQMLQHNLQVLSKTNAKCIHAS---------YLDVM------LGLQQDVVFLDPPWGGPEYKDLERVDLFLGGVPLHEICTRLQGT-AKCVVLKVPSNFDDEKFAQFV-PGKVVIRRDLKKMHLV 265
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A3M6V8A2_9STRA (Trimethylguanosine synthase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8A2_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.610e-23 Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 2
Query: 53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIAL----LLPEVTASTA---------------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNV---KKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKM 646
F F N+ +LRN+LQ DE + +S+T A ++S L L E T S + + DGTAC+GGN +SF F V A+E + R ++L+ N+ KK+ K H N+LDV+ + ++ VVF+DPPWGG YK VDLFL D P+ E+C R ++ + ++LKVP+NF+ F V P + DL+KM
Sbjct: 325 FFFRNLDYELRNQLQVDEVAEFSVTDFEMATKISQAVLDLFAPLKEDTTSESGNEDHEDGCTAIQERKKYPLVVTDGTACIGGNVLSFCDFFMHVNAIENNATRVQMLRHNLQVLKKTNVKCIHA---------NYLDVM------LELQQDVVFLDPPWGGPEYKDLNKVDLFLGDVPLHEICTRLQSS-TKCIILKVPSNFDDAKFSQQV-PGNVIIRRDLKKM 533
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A6C0IY53_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IY53_9ZZZZ) HSP 1 Score: 104 bits (259), Expect = 3.000e-23 Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 2
Query: 47 VKFLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSN-IALLLPEVTASTAIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVKKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARH-----VLLKVPTNFN 580
+K +FP N+L++D+E LWSI+ N ADE+S I L I+D TA +GGN ISFAS F++V +VE D +RF+LLK N++ + + N +FL +LE+ I + VVF+DPPWGG YK +++ +S+ + +VC N ++ K+P NFN
Sbjct: 8 IKKIFPPDNCNNINKLKYDQEGLWSISRPNDADEISKKIKLFEKTGIIINTILDSTAGLGGNTISFASYFNKVISVEYDKERFKLLKSNIEN------YTYNNIVLHNFDFLQLLEQ----INEQIDVVFVDPPWGGPNYKFDDNLNIEISNTSLSDVCVLLDNYSFNENKIKIIVFKLPYNFN 181
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A329S940_9STRA (Trimethylguanosine synthase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S940_9STRA) HSP 1 Score: 108 bits (271), Expect = 3.170e-23 Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 2
Query: 53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSN--IALLLPEVTASTA-----------------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
F F N+ +LRN+LQ DE + +S+T A ++S + L +P +T+ + DGTACVGGN +SF F V A+E D R +L+ N++ K+ AK H N+LDV+ + ++ VVF+DPPWGG YK VDLFL P+ ++C R + A+ ++LKVP+NF+ F V P V DL+KM L+
Sbjct: 255 FFFRNLDYELRNQLQVDEVAEFSVTDFEMATKISQFILDLFVPPKDDTTSESGIEDQDDGTTTIEERKKYPLVVTDGTACVGGNVLSFCDFFTHVNAIENDSTRVRMLRHNLQVLQKTNAKCIHA---------NYLDVM------LELEQDVVFLDPPWGGPEYKDLDKVDLFLGGSPLHDICMRLQGS-AKCIVLKVPSNFDDTKFSQHV-PGKVVIRRDLKKMHLV 466
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: W2QLX3_PHYPN (Trimethylguanosine synthase n=10 Tax=Phytophthora TaxID=4783 RepID=W2QLX3_PHYPN) HSP 1 Score: 108 bits (269), Expect = 9.370e-23 Identity = 81/229 (35.37%), Postives = 115/229 (50.22%), Query Frame = 2
Query: 53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL-----------------PEVTAST--------AIVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNV---KKSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
F F N+ +LR++L+ DE + +S+T A ++S L L + T +T + DGTACVGGN +SF F V AVE D R E+L+ N+ +K+ A H N+LDV+ + K+ VVF+DPPWGG YK VDLFL P+ E+C R + A+ ++LKVP+NF+ F V P V DL+KM L+
Sbjct: 338 FFFRNLDYELRSQLRVDEVAEFSVTDFEMATKISQFVLELFVPTRDDMTSECDNEDRDDGTTTTEERKKYPLVVTDGTACVGGNVLSFCDFFTHVNAVENDSTRVEMLRHNLHVLQKTNANCIHA---------NYLDVM------LELKQDVVFLDPPWGGPEYKDLDKVDLFLGGLPLHEICTRL-HGSAKCIVLKVPSNFDNAKFSQLV-PGKVVIRRDLKKMHLV 549
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Match: A0A484E7N2_BRELC (Trimethylguanosine synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7N2_BRELC) HSP 1 Score: 107 bits (267), Expect = 1.590e-22 Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 2
Query: 53 FLFPNMTPKLRNRLQFDEESLWSITGQNTADEMSNIALLL--------PEVTASTA-----------------IVDGTACVGGNAISFASAFDEVWAVEIDPDRFELLKGNVK---KSIAKSAHKTKTLRFFNDNFLDVLEKEKGAIGAKRPVVFIDPPWGGEAYKKKGLVDLFLSDKPMVEVCRRAANAGARHVLLKVPTNFNLRGFRDGVGPAGRVSLHDLRKMLLI 655
F F N+ +LRN+LQ D+ + +S+T A ++S++ L L + TA + DGTACVGGN +SF F V A+E D R ++L+ N++ K+ K H N+LDV+ + K+ VVF+DPPWGG YK VDLFL +P+ E+C R + + ++LKVP+NF+ F V P V DL+KM L+
Sbjct: 316 FFFRNLAYELRNQLQVDKVAEFSVTDFEMATKISHVVLNLFVPFQGGIVAESGDTAHEDSNMINSERAKHPLIVTDGTACVGGNVLSFCDFFAHVNAIENDFSRVQMLQHNLQVLQKTNVKCIHA---------NYLDVM------LQLKQDVVFLDPPWGGPEYKDLERVDLFLGGQPLHEICSRLQGS-TKCIVLKVPSNFDEVKFSQNV-PGKVVIRRDLKKMHLV 527 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16250.1 >prot_C-linearis_contig86.16250.1 ID=prot_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp MTPKLRNRLQFDEESLWSITGQNTADEMSNIALLLPEVTASTAIVDGTACback to top mRNA from alignment at C-linearis_contig86:611276..614655+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16250.1 ID=mRNA_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3380bp|location=Sequence derived from alignment at C-linearis_contig86:611276..614655+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:611276..614655+ >mRNA_C-linearis_contig86.16250.1 ID=mRNA_C-linearis_contig86.16250.1|Name=mRNA_C-linearis_contig86.16250.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig86:611276..614655+ (Chordaria linearis ClinC8C monoicous)back to top |