mRNA_C-linearis_contig86.16235.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16235.1
Unique NamemRNA_C-linearis_contig86.16235.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:514298..515262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.3750398-CDS-C-linearis_contig86:514297..5144281622930649.3750398-CDS-C-linearis_contig86:514297..514428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514298..514428 -
1690881178.145726-CDS-C-linearis_contig86:514297..5144281690881178.145726-CDS-C-linearis_contig86:514297..514428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514298..514428 -
1622930649.3897293-CDS-C-linearis_contig86:514970..5152621622930649.3897293-CDS-C-linearis_contig86:514970..515262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514971..515262 -
1690881178.1740472-CDS-C-linearis_contig86:514970..5152621690881178.1740472-CDS-C-linearis_contig86:514970..515262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514971..515262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16235.1prot_C-linearis_contig86.16235.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 514298..515262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16235.1

>prot_C-linearis_contig86.16235.1 ID=prot_C-linearis_contig86.16235.1|Name=mRNA_C-linearis_contig86.16235.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
LIVSVTAPSVCFLREGAMVCRKDVLVAAAAASWPEAVLVNAFVDLSLSSS
RPASSSATARRHHHQHSRHASELPRAHRCTSLLATRPSRRSTTRLWDGPG
GAADNVGGSSSSGSSGGGGGDETNPAGEGTGGDQEGAAGTG
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mRNA from alignment at C-linearis_contig86:514298..515262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16235.1 ID=mRNA_C-linearis_contig86.16235.1|Name=mRNA_C-linearis_contig86.16235.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=965bp|location=Sequence derived from alignment at C-linearis_contig86:514298..515262- (Chordaria linearis ClinC8C monoicous)
CTGATTGTCTCTGTCACAGCGCCTTCTGTATGCTTTCTGCGTGAGGGGGC
GATGGTGTGTAGAAAGGACGTGCTCGTAGCTGCAGCAGCCGCTTCGTGGC
CCGAGGCTGTCCTGGTGAACGCTTTCGTGGACTTGTCTTTGTCGTCGTCA
AGACCAGCATCGTCATCTGCTACTGCCCGAAGACACCACCACCAGCATAG
CAGGCACGCAAGCGAGCTGCCGCGGGCACACCGATGCACAAGCCTCTTGG
CAACAAGACCATCTCGACGAAGCACGACGCGTCTGTGGGACGGTGAGAGG
AGTCCGGTGGCCGTGCGGTTGGTCAGCTCTGTTGAAGAAGCAGTAAAAAG
GCAACGACAGAAGTCGGTGCACAGCATTGACCCACGCGCGCACACATGCG
TGAGCGGACCTCGAACATGTTATTGTTGCAGGGGTGTCCAACACCCCTGC
CCGAATCGTTCCCTTCCTATGCTCGTCTGCAGCCTCTCTATTGCTGCCGC
CTTCGCACATCTCACGTCGCGAAAAATCCGATGTTGTGCTGCTCTGACGG
AACCCATAAAGATCCATCCACAGCACACTCTTGTGTAGACGTGTAGACTA
CACCTCACATGATGACGCTAAACTACATACTCCGAGTACTGACGTTTGAA
GTTTCAAACCGGTTCGATCGACCCTGCCATGTATGATAATACAACATTTA
CATGCATGCATTTGTTTGATCGCAACAAGAGCACCGACCGAAGCAAACTC
AACTTCGCTTCTCGTCCCTCCCCACCCCGCTCGCATCCCGACACTCCCGC
GCGCCGTTCTCCGCAAACCACCTATTTACCCCAGGTCCGGGAGGCGCCGC
CGACAACGTAGGCGGGAGCAGCAGCAGCGGAAGCAGCGGCGGCGGCGGCG
GCGATGAGACTAACCCCGCCGGCGAAGGCACGGGCGGAGACCAGGAGGGG
GCGGCGGGCACTGGG
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Coding sequence (CDS) from alignment at C-linearis_contig86:514298..515262-

>mRNA_C-linearis_contig86.16235.1 ID=mRNA_C-linearis_contig86.16235.1|Name=mRNA_C-linearis_contig86.16235.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig86:514298..515262- (Chordaria linearis ClinC8C monoicous)
CTGATTGTCTCTGTCACAGCGCCTTCTGTATGCTTTCTGCGTGAGGGGGC
GATGGTGTGTAGAAAGGACGTGCTCGTAGCTGCAGCAGCCGCTTCGTGGC
CCGAGGCTGTCCTGGTGAACGCTTTCGTGGACTTGTCTTTGTCGTCGTCA
AGACCAGCATCGTCATCTGCTACTGCCCGAAGACACCACCACCAGCATAG
CAGGCACGCAAGCGAGCTGCCGCGGGCACACCGATGCACAAGCCTCTTGG
CAACAAGACCATCTCGACGAAGCACGACGCGTCTGTGGGACGCTGATTGT
CTCTGTCACAGCGCCTTCTGTATGCTTTCTGCGTGAGGGGGCGATGGTGT
GTAGAAAGGACGTGCTCGTAGCTGCAGCAGCCGCTTCGTGGCCCGAGGCT
GTCCTGGTGAACGCTTTCGTGGACTTGTCTTTGTCGTCGTCAAGACCAGC
ATCGTCATCTGCTACTGCCCGAAGACACCACCACCAGCATAGCAGGCACG
CAAGCGAGCTGCCGCGGGCACACCGATGCACAAGCCTCTTGGCAACAAGA
CCATCTCGACGAAGCACGACGCGTCTGTGGGACGGTCCGGGAGGCGCCGC
CGACAACGTAGGCGGGAGCAGCAGCAGCGGAAGCAGCGGCGGCGGCGGCG
GCGATGAGACTAACCCCGCCGGCGAAGGCACGGGCGGAGACCAGGAGGGG
GCGGCGGGCACTGGGGTCCGGGAGGCGCCGCCGACAACGTAGGCGGGAGC
AGCAGCAGCGGAAGCAGCGGCGGCGGCGGCGGCGATGAGACTAACCCCGC
CGGCGAAGGCACGGGCGGAGACCAGGAGGGGGCGGCGGGCACTGGG
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