mRNA_C-linearis_contig86.16231.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16231.1
Unique NamemRNA_C-linearis_contig86.16231.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:482761..483184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size426
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930652.0583086-UTR-C-linearis_contig86:482760..4828511622930652.0583086-UTR-C-linearis_contig86:482760..482851Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 482761..482851 +
1690881178.6412492-UTR-C-linearis_contig86:482760..4828511690881178.6412492-UTR-C-linearis_contig86:482760..482851Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 482761..482851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930652.0798428-CDS-C-linearis_contig86:482851..4831841622930652.0798428-CDS-C-linearis_contig86:482851..483184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 482852..483184 +
1690881178.6589272-CDS-C-linearis_contig86:482851..4831841690881178.6589272-CDS-C-linearis_contig86:482851..483184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 482852..483184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16231.1prot_C-linearis_contig86.16231.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 482852..483184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16231.1

>prot_C-linearis_contig86.16231.1 ID=prot_C-linearis_contig86.16231.1|Name=mRNA_C-linearis_contig86.16231.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MACTLHTAAIVLFIVPITTRDTPHPTSLQAGGRASQAPEPLQLGPCPQRP
RQRHLRCPPATTTTITTAIATTNTTTQRCKRVSPFRPDNTNVAPRRRWQR
QRLLLLCRELL
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mRNA from alignment at C-linearis_contig86:482761..483184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16231.1 ID=mRNA_C-linearis_contig86.16231.1|Name=mRNA_C-linearis_contig86.16231.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=424bp|location=Sequence derived from alignment at C-linearis_contig86:482761..483184+ (Chordaria linearis ClinC8C monoicous)
GAGCGGACGCGGACGCAGCCTACAGGTATGCTATCAGTCCTTTCGATGGA
CGGTGCATGACTTGGCTACATACGAAGCATGATATAACTAGATGGCGTGT
ACGCTGCACACAGCAGCAATAGTTCTTTTTATCGTGCCAATCACAACAAG
AGACACCCCACACCCCACGTCACTTCAGGCGGGCGGGCGGGCCTCACAAG
CGCCAGAACCGTTGCAGCTTGGTCCCTGCCCGCAGCGGCCGCGACAGCGG
CATCTGCGGTGCCCCCCCGCCACCACTACCACAATCACTACCGCTATCGC
CACCACCAATACCACTACCCAACGCTGCAAGAGGGTGTCCCCCTTCCGCC
CGGACAACACCAACGTCGCCCCGCGGCGGCGGTGGCAGCGGCAGCGGTTG
TTGCTGCTCTGCCGCGAGTTGCTG
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Coding sequence (CDS) from alignment at C-linearis_contig86:482761..483184+

>mRNA_C-linearis_contig86.16231.1 ID=mRNA_C-linearis_contig86.16231.1|Name=mRNA_C-linearis_contig86.16231.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig86:482761..483184+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTGTACGCTGCACACAGCAGCAATAGTTCTTTTTATCGTGCCAAT
CACAACAAGAGACACCCCACACCCCACGTCACTTCAGGCGGGCGGGCGGG
CCTCACAAGCGCCAGAACCGTTGCAGCTTGGTCCCTGCCCGCAGCGGCCG
CGACAGCGGCATCTGCGGTGCCCCCCCGCCACCACTACCACAATCACTAC
CGCTATCGCCACCACCAATACCACTACCCAACGCTGCAAGAGGGTGTCCC
CCTTCCGCCCGGACAACACCAACGTCGCCCCGCGGCGGCGGTGGCAGCGG
CAGCGGTTGTTGCTGCTCTGCCGCGAGTTGCTGATGGCGTGTACGCTGCA
CACAGCAGCAATAGTTCTTTTTATCGTGCCAATCACAACAAGAGACACCC
CACACCCCACGTCACTTCAGGCGGGCGGGCGGGCCTCACAAGCGCCAGAA
CCGTTGCAGCTTGGTCCCTGCCCGCAGCGGCCGCGACAGCGGCATCTGCG
GTGCCCCCCCGCCACCACTACCACAATCACTACCGCTATCGCCACCACCA
ATACCACTACCCAACGCTGCAAGAGGGTGTCCCCCTTCCGCCCGGACAAC
ACCAACGTCGCCCCGCGGCGGCGGTGGCAGCGGCAGCGGTTGTTGCTGCT
CTGCCGCGAGTTGCTG
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