mRNA_C-linearis_contig86.16224.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16224.1
Unique NamemRNA_C-linearis_contig86.16224.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:337770..338422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16224.1prot_C-linearis_contig86.16224.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 337950..338399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.9795353-UTR-C-linearis_contig86:337769..3379491622930651.9795353-UTR-C-linearis_contig86:337769..337949Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 337770..337949 +
1690881178.6047828-UTR-C-linearis_contig86:337769..3379491690881178.6047828-UTR-C-linearis_contig86:337769..337949Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 337770..337949 +
1622930652.0101202-UTR-C-linearis_contig86:338399..3384221622930652.0101202-UTR-C-linearis_contig86:338399..338422Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 338400..338422 +
1690881178.6307719-UTR-C-linearis_contig86:338399..3384221690881178.6307719-UTR-C-linearis_contig86:338399..338422Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 338400..338422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.9960678-CDS-C-linearis_contig86:337949..3383991622930651.9960678-CDS-C-linearis_contig86:337949..338399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 337950..338399 +
1690881178.6168084-CDS-C-linearis_contig86:337949..3383991690881178.6168084-CDS-C-linearis_contig86:337949..338399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 337950..338399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16224.1

>prot_C-linearis_contig86.16224.1 ID=prot_C-linearis_contig86.16224.1|Name=mRNA_C-linearis_contig86.16224.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=150bp
MAAVKPKLLPCPAYQDHASRTDCPHAVSKIARSAPKQFAQAKPEQFHALF
AYSTHVLQPNSCTLTTSPTKARKRARSPDKLEHVPQKKKPQSTPSRPVNT
HQPHKKDITTQLPRKRKRDKNSTPVADAKKNSWPNATRTHGAHAPPPPC*
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mRNA from alignment at C-linearis_contig86:337770..338422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16224.1 ID=mRNA_C-linearis_contig86.16224.1|Name=mRNA_C-linearis_contig86.16224.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at C-linearis_contig86:337770..338422+ (Chordaria linearis ClinC8C monoicous)
GGCGCCATTCGGCCTCGGGTGTTGTCGATGCCGCTCGTCGTGCAGGCTGT
GACGCGAATCCTTTAAGCCGGCCGGGTGGACGACGGCAGCAGCACGTTTT
GAGGGTGGAGGGGGGCAGCAGGGAGAGGGGAGAGAGAGAGAGAGAGAGAG
TAGGGCGATTCGCGCGATCTTTTACATGCTATGGCGGCGGTGAAACCTAA
GCTGCTCCCTTGTCCGGCGTACCAGGACCACGCAAGCAGAACTGACTGCC
CCCATGCGGTTTCCAAAATTGCCAGATCAGCTCCAAAGCAGTTTGCACAA
GCCAAGCCAGAACAATTCCATGCGCTTTTCGCCTATTCAACGCATGTTCT
GCAACCGAACTCATGCACACTGACAACCAGCCCCACCAAGGCTCGGAAGC
GCGCGCGCAGCCCAGACAAGCTCGAACATGTTCCACAGAAAAAGAAACCC
CAAAGTACACCCTCACGGCCTGTGAACACACACCAGCCCCACAAGAAAGA
CATCACGACGCAACTCCCACGAAAGAGAAAGCGTGACAAAAACAGCACTC
CTGTTGCCGACGCCAAAAAAAACTCTTGGCCAAACGCCACACGCACGCAT
GGCGCGCACGCACCTCCCCCTCCATGCTGAGGCCGACGTCGCCCGCCCTC
TCC
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Coding sequence (CDS) from alignment at C-linearis_contig86:337770..338422+

>mRNA_C-linearis_contig86.16224.1 ID=mRNA_C-linearis_contig86.16224.1|Name=mRNA_C-linearis_contig86.16224.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at C-linearis_contig86:337770..338422+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGCGGTGAAACCTAAGCTGCTCCCTTGTCCGGCGTACCAGGACCA
CGCAAGCAGAACTGACTGCCCCCATGCGGTTTCCAAAATTGCCAGATCAG
CTCCAAAGCAGTTTGCACAAGCCAAGCCAGAACAATTCCATGCGCTTTTC
GCCTATTCAACGCATGTTCTGCAACCGAACTCATGCACACTGACAACCAG
CCCCACCAAGGCTCGGAAGCGCGCGCGCAGCCCAGACAAGCTCGAACATG
TTCCACAGAAAAAGAAACCCCAAAGTACACCCTCACGGCCTGTGAACACA
CACCAGCCCCACAAGAAAGACATCACGACGCAACTCCCACGAAAGAGAAA
GCGTGACAAAAACAGCACTCCTGTTGCCGACGCCAAAAAAAACTCTTGGC
CAAACGCCACACGCACGCATGGCGCGCACGCACCTCCCCCTCCATGCTGA
ATGGCGGCGGTGAAACCTAAGCTGCTCCCTTGTCCGGCGTACCAGGACCA
CGCAAGCAGAACTGACTGCCCCCATGCGGTTTCCAAAATTGCCAGATCAG
CTCCAAAGCAGTTTGCACAAGCCAAGCCAGAACAATTCCATGCGCTTTTC
GCCTATTCAACGCATGTTCTGCAACCGAACTCATGCACACTGACAACCAG
CCCCACCAAGGCTCGGAAGCGCGCGCGCAGCCCAGACAAGCTCGAACATG
TTCCACAGAAAAAGAAACCCCAAAGTACACCCTCACGGCCTGTGAACACA
CACCAGCCCCACAAGAAAGACATCACGACGCAACTCCCACGAAAGAGAAA
GCGTGACAAAAACAGCACTCCTGTTGCCGACGCCAAAAAAAACTCTTGGC
CAAACGCCACACGCACGCATGGCGCGCACGCACCTCCCCCTCCATGCTGA
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