mRNA_C-linearis_contig86.16216.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16216.1
Unique NamemRNA_C-linearis_contig86.16216.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: D8LSC7_ECTSI (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC7_ECTSI)

HSP 1 Score: 478 bits (1230), Expect = 1.390e-162
Identity = 241/281 (85.77%), Postives = 260/281 (92.53%), Query Frame = 2 
Query:  110 MESLMQRLKVVLDKITTARARVVTASKSPAWVKPRFLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQMHETKHITVPVYSDAADAQAGESLTAPETKQLAEEGVPESKGERDYPL 952
            ME LMQ++KVVLDKITTARARVV ASKSPAWVKPRFLTHIMGP+IA+IVIASTF+KTE L+LFSLHATCM+LAFVVLMPEGVVAYRNHLLLDSLSPIMSNG KAKKRTIHLTLQVLASMFAALGL FI  NK +HRN+ILP T HGV G +TLLAMVMQ VVGRLKH+SFTSGV+DARNRGK+YRWHGKMGLLLYDLST S +LGLW+FFGLSVVAVVVP++LAYAWLNVNLQMHETKHITVPVYS+  D  AGE LTAPETKQL EEGVPESKGER+YPL
Sbjct:    1 MEGLMQKMKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGKMGLLLYDLSTVSVVLGLWTFFGLSVVAVVVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGEREYPL 281
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A6H5L675_9PHAE (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L675_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.840e-105
Identity = 165/189 (87.30%), Postives = 175/189 (92.59%), Query Frame = 2 
Query:  110 MESLMQRLKVVLDKITTARARVVTASKSPAWVKPRFLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGK 676
            ME LMQ+LKVVLDKITTARARVV A KSPAWVKPRFLTHIMGP+IAVIVIASTF+KTE L+LFSLHATCM+LAFVVLMPEGVVAYRNHLLLDSLSPIMSNG KAKKRTIHLTLQVLASMFAALGL FI  NK +HRN+ILP T HGV G +TLLAMVMQ VVGRLKH+SFTSGV+DARNRGKRYRWHGK
Sbjct:    1 MEGLMQKLKVVLDKITTARARVVAAFKSPAWVKPRFLTHIMGPVIAVIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNRGKRYRWHGK 189
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A836C9M8_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.510e-50
Identity = 106/279 (37.99%), Postives = 163/279 (58.42%), Query Frame = 2 
Query:  107 MMESLMQRLKVVLDKITTARARVVTASKSPAWVKPRFLTHIMGP--LIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGL-SVVAVVVPVLLAYAWLNVNLQMHETKHITVPVYSDAADAQAGESLTAPETKQLAEEGVPESKG 934
            M  ++ + L+  LD+ T  R R+ ++  +P W+KP+++TH++    +I ++VI +   +T    +FS H   MSL F++ M  GV+AYRN  LLD LSPIM +G   K RT+H+T Q  A  F  LGLLFI ++K  H + ++PH+IH V G+  L+A  +Q  VG+LK+ S T      R + ++  WHGKMGLLLYD++  + L GLW+  G+ ++ ++V+ ++L   W+N+N QM E +   V  YS          L   +T   AEE   E  G
Sbjct:    1 MAAAVSENLRAALDETTVRRTRLFSSFTTPKWLKPKYMTHVLAAANVITIVVIVAIHERT--FSVFSFHPLFMSLGFLMCMSLGVIAYRNKFLLDLLSPIMMHGPTTKSRTMHITFQSFAGGFILLGLLFIVASKLKHGSTVVPHSIHAVLGSAVLVATAVQVTVGKLKYDSLT------RRQERKQLWHGKMGLLLYDVAAVTILTGLWALVGVVTLSSLVMMLMLVLLWVNINYQMSEPRPPDVAPYS---------GLNTDDTALAAEESKAEEDG 262
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: W7TJN5_9STRA (Cytochrome b-561 domain containing 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJN5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.120e-28
Identity = 76/226 (33.63%), Postives = 113/226 (50.00%), Query Frame = 2 
Query:  146 DKITTARARVVTASKS-PAWVKPRFLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNR---GKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQM 811
            D +T  R   V   K     V+   + H+    + + +   + A+   L LFS H   MS+  V+ M EG++AYRNH     LSPIM N  + K + IH    +LA++   +G+ FI SNK      ILP +IH   G +    MV+Q + G  K  +  SGV+    R   G  YRWHGK GL+LYD++  +   GL    G  ++  ++ + +   W  V+LQM
Sbjct:   36 DAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQM 261
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A4D9CVZ3_9STRA (Cytochrome b561 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVZ3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.700e-27
Identity = 76/227 (33.48%), Postives = 113/227 (49.78%), Query Frame = 2 
Query:  143 LDKITTARARVVTASKS-PAWVKPRFLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNR---GKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQM 811
            LD +T  R   V   K     V+   + H+    + + +   + A+   L LFS H   MS+  V+ M EG++AYRNH     LSPIM N  + K + IH    +LA++   LG+ FI SNK      ILP +IH   G +    MV+Q + G  K  +  SGV+    R   G  +RWHGK GL+LYD++  +   G+    G  ++   + + +   W  V+LQM
Sbjct:   48 LDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVLGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGIGRDGGGVLHRWHGKAGLILYDVAMATVATGVVKSLGFGLMTFFMVLHVCLVWFMVHLQM 274
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A7S2SRB3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.050e-26
Identity = 71/206 (34.47%), Postives = 112/206 (54.37%), Query Frame = 2 
Query:  215 FLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQ--MHETKH 826
            + THI+   +AV++I +    T    LFS H   M++  VV M EG + YRN  L+ + SPIM    K++ R+IH T+Q+ A +F+ +G++FI +NKA    +  P T+H   GT+ LL M++Q +VG  K          +R+    +RWHG  G + +DL+  + + G  SF     ++  +   LA  WL+  LQ  + E KH
Sbjct:   64 YFTHILAIPLAVLLIVAVLITTRTFSLFSFHPIFMTVGCVVFMSEGFLVYRNGTLVSTFSPIMGGSSKSQARSIHATMQISAVIFSFIGVMFILANKARLGKSFTPATLHSWIGTLALLFMLIQGLVGLAK----------SRSSSPVHRWHGSAGKVTFDLAMLAVISGSISFLPTGFLSTFIVTALAVLWLSSQLQFAISEQKH 259
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A482SE52_9ARCH (Cytochrome b561 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE52_9ARCH)

HSP 1 Score: 84.7 bits (208), Expect = 3.960e-15
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = 2 
Query:  428 RTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQMHETKHI 829
            R IH + Q + + F  LGLLFI +NK  +   I+PHT+H VAGT+ ++A+ +QA +G+ K       +++   R   YRWHG MGL+L+D+   + +LGL SF   S  +++V +L   A   V+LQ+  + ++
Sbjct:    8 RAIHQSSQFIGASFMLLGLLFILANKFDYEKTIIPHTLHSVAGTICIIAVGVQAFIGQSK----IDRLLETHRR--IYRWHGDMGLVLWDILCITTVLGLASFLPFSFFSLLVLMLPLVACTVVHLQLQSSGYL 135
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A7S1CMU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMU4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.310e-10
Identity = 60/193 (31.09%), Postives = 91/193 (47.15%), Query Frame = 2 
Query:  164 RARVVTASKSPAWVKPRFLTHIMGPLIAVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWSFFG 742
            R+R   A + P+W+  R +   +G + A  V A   A      LFS H   M LA  VL     + Y      ++        ++A+ R  H  L + A   A +G+L I  NK      ++P ++H   G  T++A+V+QA VGR+K        ++A  R K YRWHG++G L       + +LG W FFG
Sbjct:   52 RSRSAAAPRGPSWL--RLMAVGVGVVWAACVGAEVVAVVGWATLFSFHPLPM-LAACVLAVAATMTYYGDAKTEA-------DVQAQ-RAQHRVLMMGAVGCAVVGMLAIFGNKVQRGKTLVPTSLHAWVGAATMVAVVVQAAVGRMK--------IEALPR-KVYRWHGQLGALTLAGLLAAAVLGAWKFFG 224
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: A0A6G0WDI2_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDI2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.760e-10
Identity = 58/195 (29.74%), Postives = 102/195 (52.31%), Query Frame = 2 
Query:  245 AVIVIASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAK----KRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAGTVTLLAMVMQAVVG--RLKHVSFTSGVVDARNRGKR-YRWHGKMGLLLYDLSTTSFLLGLW-------SFFGLSVVAV-VVPVLLAY 784
            A + IA        L+LF LHA CMS+ +V    E ++ +R         P  S  +++     +R IH  +   A +F  LGL+ I  ++  +  +++PH IH   G++ +L +++Q V+G  +L  + F         +G+R +R+HGK+G L Y LS  + +LG++       ++   +VVA+ V+PV+ AY
Sbjct:   69 AAVAIAVGVIVHRGLNLFFLHAMCMSIGYVAFATEAMLVFR---------PFPSWNVRSPNQRVQRNIHRFMNQAAGIFTILGLVAICVHRWSNGKSLIPHGIHSWMGSLVILLILVQIVIGHKKLNLLLF---------QGQRSFRFHGKLGRLTYALSILTVILGIFHIYKNYMAYVWTAVVALPVIPVIYAY 245
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BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Match: UPI001B7DFD64 (cytochrome b561 domain-containing protein 1 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DFD64)

HSP 1 Score: 57.8 bits (138), Expect = 1.410e-5
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 2 
Query:  296 FSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMSNGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPH--TIHGVAGTVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLSTTSFLLGLWS 733
            FS H  CM +A    M E ++ +     LDS SP     IKAK R IH  +QV A++F ++GL+FI S+K    +   PH  + H + G  T++A+  Q + G    + F   +++  +  +   +H   GLL Y ++T +  LGL S
Sbjct:   59 FSWHPACMVIAVCFCMTEAILTFS----LDS-SPFFFCSIKAKVR-IHWMMQVFATIFGSIGLVFIVSSKNISES---PHFTSWHSILGVGTVIAVCGQLLCGLC--LLFPK-LINTYSVARLRLYHATCGLLAYLMATATVELGLCS 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LSC7_ECTSI1.390e-16285.77Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A6H5L675_9PHAE2.840e-10587.30Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A836C9M8_9STRA1.510e-5037.99Cytochrome b561 domain-containing protein n=1 Tax=... [more]
W7TJN5_9STRA1.120e-2833.63Cytochrome b-561 domain containing 1 n=1 Tax=Nanno... [more]
A0A4D9CVZ3_9STRA1.700e-2733.48Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A7S2SRB3_9STRA1.050e-2634.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482SE52_9ARCH3.960e-1537.31Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A7S1CMU4_9STRA4.310e-1031.09Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6G0WDI2_9STRA5.760e-1029.74Cytochrome b561 domain-containing protein n=1 Tax=... [more]
UPI001B7DFD641.410e-533.11cytochrome b561 domain-containing protein 1 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:243632..249486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons7
Model size2119
Cds size849
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.0585763-UTR-C-linearis_contig86:243631..2437371622930657.0585763-UTR-C-linearis_contig86:243631..243737Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 243632..243737 +
1690881181.2697024-UTR-C-linearis_contig86:243631..2437371690881181.2697024-UTR-C-linearis_contig86:243631..243737Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 243632..243737 +
1622930657.2043588-UTR-C-linearis_contig86:248322..2494861622930657.2043588-UTR-C-linearis_contig86:248322..249486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 248323..249486 +
1690881181.3688252-UTR-C-linearis_contig86:248322..2494861690881181.3688252-UTR-C-linearis_contig86:248322..249486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 248323..249486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.0775414-CDS-C-linearis_contig86:243737..2438211622930657.0775414-CDS-C-linearis_contig86:243737..243821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 243738..243821 +
1690881181.2822318-CDS-C-linearis_contig86:243737..2438211690881181.2822318-CDS-C-linearis_contig86:243737..243821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 243738..243821 +
1622930657.0932775-CDS-C-linearis_contig86:245074..2451871622930657.0932775-CDS-C-linearis_contig86:245074..245187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 245075..245187 +
1690881181.293462-CDS-C-linearis_contig86:245074..2451871690881181.293462-CDS-C-linearis_contig86:245074..245187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 245075..245187 +
1622930657.10907-CDS-C-linearis_contig86:245683..2458311622930657.10907-CDS-C-linearis_contig86:245683..245831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 245684..245831 +
1690881181.3105834-CDS-C-linearis_contig86:245683..2458311690881181.3105834-CDS-C-linearis_contig86:245683..245831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 245684..245831 +
1622930657.1254294-CDS-C-linearis_contig86:246200..2463111622930657.1254294-CDS-C-linearis_contig86:246200..246311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 246201..246311 +
1690881181.3229642-CDS-C-linearis_contig86:246200..2463111690881181.3229642-CDS-C-linearis_contig86:246200..246311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 246201..246311 +
1622930657.1401865-CDS-C-linearis_contig86:246942..2470561622930657.1401865-CDS-C-linearis_contig86:246942..247056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 246943..247056 +
1690881181.3370936-CDS-C-linearis_contig86:246942..2470561690881181.3370936-CDS-C-linearis_contig86:246942..247056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 246943..247056 +
1622930657.1576211-CDS-C-linearis_contig86:247588..2477201622930657.1576211-CDS-C-linearis_contig86:247588..247720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 247589..247720 +
1690881181.3499482-CDS-C-linearis_contig86:247588..2477201690881181.3499482-CDS-C-linearis_contig86:247588..247720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 247589..247720 +
1622930657.1767142-CDS-C-linearis_contig86:248175..2483221622930657.1767142-CDS-C-linearis_contig86:248175..248322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 248176..248322 +
1690881181.3602273-CDS-C-linearis_contig86:248175..2483221690881181.3602273-CDS-C-linearis_contig86:248175..248322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 248176..248322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16216.1prot_C-linearis_contig86.16216.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 243738..248322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16216.1

>prot_C-linearis_contig86.16216.1 ID=prot_C-linearis_contig86.16216.1|Name=mRNA_C-linearis_contig86.16216.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MMESLMQRLKVVLDKITTARARVVTASKSPAWVKPRFLTHIMGPLIAVIV
IASTFAKTEKLDLFSLHATCMSLAFVVLMPEGVVAYRNHLLLDSLSPIMS
NGIKAKKRTIHLTLQVLASMFAALGLLFITSNKAFHRNNILPHTIHGVAG
TVTLLAMVMQAVVGRLKHVSFTSGVVDARNRGKRYRWHGKMGLLLYDLST
TSFLLGLWSFFGLSVVAVVVPVLLAYAWLNVNLQMHETKHITVPVYSDAA
DAQAGESLTAPETKQLAEEGVPESKGERDYPL*
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mRNA from alignment at C-linearis_contig86:243632..249486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16216.1 ID=mRNA_C-linearis_contig86.16216.1|Name=mRNA_C-linearis_contig86.16216.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5855bp|location=Sequence derived from alignment at C-linearis_contig86:243632..249486+ (Chordaria linearis ClinC8C monoicous)
TTTAATTTTACTCTTGTTCTCGCAGCTGGAGCAGGAGCTCAGGCGACGCA
GCCGGCGCAGCCGCGAATCAGTTCGCGCTCGCTGCGTATTCTCCGGGGCC
GAGACGATGATGGAGAGCCTCATGCAAAGACTCAAGGTCGTGCTGGACAA
GATCACGACGGCGAGGGCCCGGGTGGTGACCGCTTCCAAGGTATGCTAAG
TCGATGGTTACAGACAGTAGGTGGATGCCGCACCGGCAAAAGCTGCTGCA
ACAGCAGGAGTGGTGTGCTATGTGCAATTTTGTGGAATGATGGTGGGATG
CGTTGTGGCGCTTGCGTGAAACACGTTACAGACCGGCCCGGTTGTTCAAC
AACACCCGTGTCGATACCCATAGTTTAGTGTCTAGTCCAGAAGGAAGCCT
TCATTCATAAACTGCTGTGCAGACAGATGTCTACCCCGTTCGCAGAAATC
ATACATTCCACGAGACGCTAAGCAGGGTCCTACCCCTGCTGTGCGCGCTT
GCAACCACCAAAGAACCAGTGCACCCCCCCCCAGCTCGGGTAGGATGAAA
GCAACTAGTGTGTTTTCCCTTTTTTTCAATGTACAACTCCAGCGGTAGAG
AGCCAGCACAAGGGTACGTAGACTCTACTGCTGTAGACAATTTGATTCGC
AAGAAAACGAGCGAACGCGCGGCCGTTGCCGCTTGTCCGCGTCTGGCTGT
TTGGTGGGAACCCCCCCACACTCACAGCCCACAGCCATTCGCGTTGAATG
TTGTTTCCTCGTCCAATGCTGTCGGCTGGTTTTGGATTCCTATTCCTTCT
TGCACGACGTTCTTTGTTTCTTGTTTTTTGCTGCTCCTGGTGGCGTGGGT
GCCTTCTCTCGCTCCCCCCCCCCCGCGAACCGCGAACCGTCAATCTTTCT
ACATAAATTTACACTGTTTCTACATAATATGTTGTATGCATCTATTCCGT
GCAGTGTGTCGGCTGCTGGTTGGTCGGAAAAAAATCGCGAAGTTCCTCTT
GTTGATTTCTTAGATTTCTAGACGAGTCTCCTCGAAATGATATCAAAACC
CTCATCTATCAAACCCACTGGTCGTGGGTCCATTAAACACAATCCAAGCG
GTTGTAGATTGACTCATTCATACTGGGCAACGGCCGTTTTTGTGCCCCGT
GCGCGTTTCTTTTGGTGTGCGCGAAGTGGAGGTCTAGAATATTCGATGCA
AGCAAGTCGCTACGACGTGCAGGACTTGCTTCCTCGGTCACGCGTACTGC
TGTACAGAACAGCAGTATTACTCAAAAGCTTTTTCCCAATAATTGGCAAC
GCCCCTAGTGTCTACAGCAGTACGCCTAAAACATATTTCTCAACGTTGCC
GTATCTTTTAAACCCAGCACCTAATCCAACACAGCATTATTCTTGTGGGG
AAATATTTGTGACCCTTGCGTCTTTTTGCTTTGCTCTCTGCAGAGCCCCG
CATGGGTGAAACCGAGGTTCCTGACGCACATCATGGGGCCGCTGATCGCG
GTGATTGTGATCGCATCCACCTTCGCCAAGACGGAGAAGCTGGATCTCTT
CAGCTTGTGAGTGTGGAATTACAGATCGCTGTTCGTCCCTCTCGCACTGC
CGTGCGTTTGTTTCTTTTTTCTTCCCGTGAGCATTCCAGGATGCTACCCG
TTTGTCTTGCCTGCTCTTCGCAGCATGCAACGATTTTGTCAGCCCGGAAA
GTTTCGTACACAGTAGCGGGTAGACAGGCTACGTGTAACACTTTTGGGGG
ACAGCAGTAAACTGAACAGCCCCCAAAACTAACCAGTAGACTACTACCAC
CCTGCTACATTTCTACTCCTGACCCATGATGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTATGCACACTACCGCTTCCACCACTG
CTACTGCTGCTTCTGACCCAAGCTCTCGCCCACGCTCCGACAACCATTTT
CTCTTTTTTTCCCTCCCCGCATCCGACGATGTCGATCGAACCAACTTTTT
TTCAAACCCCCAAAAACGTGTCAAAAACATCAACATGGAAAACAAAAAAA
AGGCACGCAACGTGCATGTCCCTGGCCTTCGTGGTGCTCATGCCGGAGGG
CGTCGTGGCGTACCGGAATCACCTGCTGCTGGATTCTCTCAGCCCCATCA
TGTCGAATGGCATCAAGGCCAAGAAACGTACCATCCACTTGACGCTTCAG
GTACATGGATACGTAATAAGGCCCAAAAGAGAAAAGAGGGCGGGGGGGGG
GTAGGGTATACGAAGTATGTATCGTACACATACATGTACATGGGCGATTG
TGCCAAGAAGTTTGTGTACCCGCGCGTCTGTGGAACGCAGTGGCGAAGAG
CATGAAGAGCTCGCTCCCGCGCGCCGGTGACGCCCCTGATTAGGTGGCAA
ATATGCTCCGGCTCGAAGGGGGTGCGAGATGGTCAATGGTTACGTACTTC
AGGACCTCTTAGTCAAGCAGCGATTGAGTACCACAGAAAATACTTGAGTA
CACGCCCCCCCTATCACCTGCCTTTGTCTTTCCCGCGCTATTCGTTCGTT
CCCCCTTTGACCCTATTAGGTCCTCGCCTCCATGTTTGCGGCGTTAGGCC
TGCTCTTCATCACGAGCAACAAGGCTTTCCATCGGAACAACATCCTGCCG
CACACGATACACGGCGTGGCCGGCACCGTCGTGAGTTTTTTTGGCAAGCG
CCCCCCCCCCCCCGCAAGCAACCCCGCGTTCTCTCTCTTTTTTTTTTGCT
CTTCCGACGTAGGTAGGTATGGTCTTGTAGGTGAAAAAATATTTTTTGGA
AAGTTTGATGTCGGTGGGCTCGGCTGGACCGTTCTAATGTAGTGTTACTT
TCGCTTCTTCTTTGCTTGGCAGCTTGATGGTGCGTATCTACGTTCGCGAT
GCTCTGGAAGCAAAGAGTCTGTTGGTCCCGCCGCCCGAGTGGAGTGAAGT
TTGGCGCAGTTCAGACAGGGGGCGGGGGGCTCTCGTCCCCGGTGCATCGG
TGAAAAAGCTTGGCGAGGTCGGCTTTCTAAAAAAAAAACATAAACCTTGA
AGTTCGTTCATTCTGTTAAAAGGCTCACTCACTATTTAGCTTACGTACAT
CGGAAAAGTGCCGGCTTTTCTCCGCCGTTTCTTTTTCTGCTGGTCTTCTC
GTGTAATCTTGACGGTGGCATTCAACTCTTGTGTGTTTCTGTTGCCGCAC
TTTTTTCTTGCGCTGATACTGGTGGCCCCTTCTAGTGCGGCTTGCTGCCG
CTGCCGCTGCCGCCGCCGTGCTGATATTTTGCGTCCCGTGATTGATGATC
GGTCAATGCAGACGCTGCTGGCGATGGTGATGCAAGCGGTGGTAGGCCGG
CTAAAGCACGTGAGCTTTACGAGCGGTGTAGTGGACGCGAGAAACAGGGG
CAAGAGATACCGCTGGCATGGAAAGGTGAGTTCGGCGTGAAGTATTCAGT
CTGAAGATCATGTGTATGTAGTTCAATCCCCGTTTTGGAAAGCAAACGCC
TACTTCAGTTTTTCAGGTTCCTATACTTCGAATTATGAACTTATTCCTTC
CCATTCCAGCCCGTTCTTTGCTAAGCTATGTCGACACACTCCATCTTCGA
GATTTAAATCTCTCGTGGCTGGTGCCCCAAGTGAGGGGGCTGAAGTCGCC
CCTCAACTAAGCTGTTACATAGGGGGGCCGTGGAAGATTGGAATTAAGGA
AGCGGGGTCCCTGGCCCTTAACCCGGTCGGCGGGGCCGTACGGATGCCGT
AGACGGAGAAAATCGCTACATCCAACATACGTCACCGTTTTAAGTATGAT
GTTGGTTGGTGGTGCGTGGCTACATTCTGGCTCTGACTTTCTCCCTCTCT
GTGTGTCTCCGTGTGCCTCTGTGTTGTGTATGTGTCTTCTCTCTCGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTGCAAATTTCTCTTGTCTCTTCGTGTT
CCACCAGATGGGTCTCCTGCTGTACGATTTGTCGACGACGTCGTTCTTGC
TGGGCCTGTGGTCCTTCTTCGGCCTATCGGTCGTGGCGGTCGTCGTCCCG
GTTTTGCTGGCGTACGCCTGGCTCAACGTTAACCTGCAGGTGAGCTTTGA
GAGGTCGCTGCTGTTCTAGTGGTGGTGGGGTTGATTCCTGCCTGTGGTTG
TTGTTGTTGGTGGTGGTGGTGGTGGTGTGGGTGTTGATGGTGTTTTGGTT
GGGTTTGGTAGCGGGGGTCCTGCTGAGCGAGCAGAAATAGTGGGCTTCTT
CAATGTGTGTGCTACTTCACACCTCGCGCCATCTGGTCTCGCAAAAGTCA
GTGCGTGGAAACCCAACAGCCTGGCTCAGCTTGCAAGAAAAGGGTCCAAA
GAACGCCTCTCTTAATGGGAAACCAACGGCGCCCCCCCTGGGAGGGGACA
CGCCCGCGTGCGCAATACCAATAATAGTGGTCAAAATGACCCCGGGGCAC
GAAGCAACGAAAAATATGCCCCTTCCTCCTCCCCCCACCGATTCACCGCA
CCCCTTATTTTTTCCGTCTTCCCTATAAATACCCGCGCGCACAGATGCAC
GAAACGAAGCACATCACGGTCCCGGTATACAGCGACGCGGCGGACGCGCA
GGCCGGGGAGAGCTTAACGGCGCCGGAGACCAAGCAGCTAGCAGAAGAGG
GGGTTCCGGAGTCGAAGGGGGAGAGGGATTACCCCTTGTGAGGACGGTTC
AAAGTTCAAAGCTTGCCCATGGCTGCTGTCCTGATCGGAGCTCGGATTTT
TTTTTTTTTTTCAATGGGTGTCGGGTTCAGGAAAAAAAAATGATCGTGGA
TAGGGCGTGGCTGGCCCGCCCCGTGTCGAAGAAATTCCTGCGTGACCGGC
GCTCTACTGCTGCAGGCGTAGTTTATTTTACACCACCGCCGTGTCCTTAT
CCTGCGGACTTGTGTGTCTCTTTGTAAATACTACCTGGTACTTCGTATGT
GAAATGGCGTATTTTGTGGTGAAGCGGCAGCGCGTCTTGTGTGCTTTCGA
ATCTCGTGTTTTGCCTGTTTCAACGATACTTGGGGGCGAAGGTGGATCTA
TCACCCGCACCACATGCGCCATAGCGGGCTATCCTGGGAAGGCGTGTTGG
CACATGCAGGGTTTCTTCTCTCTTCTTTTTCTTTTTCGGAACACCGCAGC
TCAGTTCCGACAGCAAAATGGTGTCGCGTGCTTTCTTCCTTCGCGTTGGG
CAGTCCTGTTACGAACGGGCTCAGCAGCTTGCCCTCCAGAGCTTTCGTTT
CTCAGCAAACATTCATGCATGATTTTTGCGTAAGTATCTTTACAGAACGC
CCCGATATTTTTGTTTAACTTGTAAATTTACTTGTGTTGAGTGCTGTGTT
GCGGCTTTGCCCTTTTTTTCCTCACCTCACTAAAGGGCCCAGGCTGAGGT
GCGCACTCGTACAGTCAGCTGTGGGTCTGTTTCCACCCCCTACTCCTGGT
GCGCTAGCGCGGTCAAGGGCAGCTTGGTTTGACCTTTTTCTGCAGGGCAG
ATGGGTGGGGTTTTTTTTTCGCGACCGGATGCCGGTGGCAGTATGTATCT
GCTACCGCGGGCTGGCACGAAAGGATCAGCGGTAGGGTTGCGTGTACGAA
TATGACACCCCCCCCCCATCCCAGCGCACTCAAATGCGGTGAAAAATTCG
TCCTTCTCTCGGCGATGGTTGTCGTAGGATTTCGGTTGTACTTTGGAGTG
TGCTTGGTTCGTCTGTCTGCTGCACCGCGGCAGGTAGTTTGCTTGGGAGT
TAAAAGTGGGTTGTGGTTTGTGGTTTGTGGTGCTGTCCACGAAAAACACT
CGCGTCGATGTTCCTTCCGTCTCTTCTCCTCGACACCGTGTTGCACCCCA
GAATC
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Coding sequence (CDS) from alignment at C-linearis_contig86:243632..249486+

>mRNA_C-linearis_contig86.16216.1 ID=mRNA_C-linearis_contig86.16216.1|Name=mRNA_C-linearis_contig86.16216.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig86:243632..249486+ (Chordaria linearis ClinC8C monoicous)
ATGATGGAGAGCCTCATGCAAAGACTCAAGGTCGTGCTGGACAAGATCAC
GACGGCGAGGGCCCGGGTGGTGACCGCTTCCAAGATGATGGAGAGCCTCA
TGCAAAGACTCAAGGTCGTGCTGGACAAGATCACGACGGCGAGGGCCCGG
GTGGTGACCGCTTCCAAGAGCCCCGCATGGGTGAAACCGAGGTTCCTGAC
GCACATCATGGGGCCGCTGATCGCGGTGATTGTGATCGCATCCACCTTCG
CCAAGACGGAGAAGCTGGATCTCTTCAGCTTAGCCCCGCATGGGTGAAAC
CGAGGTTCCTGACGCACATCATGGGGCCGCTGATCGCGGTGATTGTGATC
GCATCCACCTTCGCCAAGACGGAGAAGCTGGATCTCTTCAGCTTGCACGC
AACGTGCATGTCCCTGGCCTTCGTGGTGCTCATGCCGGAGGGCGTCGTGG
CGTACCGGAATCACCTGCTGCTGGATTCTCTCAGCCCCATCATGTCGAAT
GGCATCAAGGCCAAGAAACGTACCATCCACTTGACGCTTCAGGCACGCAA
CGTGCATGTCCCTGGCCTTCGTGGTGCTCATGCCGGAGGGCGTCGTGGCG
TACCGGAATCACCTGCTGCTGGATTCTCTCAGCCCCATCATGTCGAATGG
CATCAAGGCCAAGAAACGTACCATCCACTTGACGCTTCAGGTCCTCGCCT
CCATGTTTGCGGCGTTAGGCCTGCTCTTCATCACGAGCAACAAGGCTTTC
CATCGGAACAACATCCTGCCGCACACGATACACGGCGTGGCCGGCACCGT
CGTCCTCGCCTCCATGTTTGCGGCGTTAGGCCTGCTCTTCATCACGAGCA
ACAAGGCTTTCCATCGGAACAACATCCTGCCGCACACGATACACGGCGTG
GCCGGCACCGTCACGCTGCTGGCGATGGTGATGCAAGCGGTGGTAGGCCG
GCTAAAGCACGTGAGCTTTACGAGCGGTGTAGTGGACGCGAGAAACAGGG
GCAAGAGATACCGCTGGCATGGAAAGACGCTGCTGGCGATGGTGATGCAA
GCGGTGGTAGGCCGGCTAAAGCACGTGAGCTTTACGAGCGGTGTAGTGGA
CGCGAGAAACAGGGGCAAGAGATACCGCTGGCATGGAAAGATGGGTCTCC
TGCTGTACGATTTGTCGACGACGTCGTTCTTGCTGGGCCTGTGGTCCTTC
TTCGGCCTATCGGTCGTGGCGGTCGTCGTCCCGGTTTTGCTGGCGTACGC
CTGGCTCAACGTTAACCTGCAGATGGGTCTCCTGCTGTACGATTTGTCGA
CGACGTCGTTCTTGCTGGGCCTGTGGTCCTTCTTCGGCCTATCGGTCGTG
GCGGTCGTCGTCCCGGTTTTGCTGGCGTACGCCTGGCTCAACGTTAACCT
GCAGATGCACGAAACGAAGCACATCACGGTCCCGGTATACAGCGACGCGG
CGGACGCGCAGGCCGGGGAGAGCTTAACGGCGCCGGAGACCAAGCAGCTA
GCAGAAGAGGGGGTTCCGGAGTCGAAGGGGGAGAGGGATTACCCCTTGTG
AATGCACGAAACGAAGCACATCACGGTCCCGGTATACAGCGACGCGGCGG
ACGCGCAGGCCGGGGAGAGCTTAACGGCGCCGGAGACCAAGCAGCTAGCA
GAAGAGGGGGTTCCGGAGTCGAAGGGGGAGAGGGATTACCCCTTGTGA
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