mRNA_C-linearis_contig86.16212.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16212.1
Unique NamemRNA_C-linearis_contig86.16212.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:213441..213771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.909766-UTR-C-linearis_contig86:213440..2134501622930651.909766-UTR-C-linearis_contig86:213440..213450Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 213441..213450 +
1690881178.572617-UTR-C-linearis_contig86:213440..2134501690881178.572617-UTR-C-linearis_contig86:213440..213450Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 213441..213450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.926091-CDS-C-linearis_contig86:213450..2137711622930651.926091-CDS-C-linearis_contig86:213450..213771Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 213451..213771 +
1690881178.5906367-CDS-C-linearis_contig86:213450..2137711690881178.5906367-CDS-C-linearis_contig86:213450..213771Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 213451..213771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16212.1prot_C-linearis_contig86.16212.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 213451..213771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16212.1

>prot_C-linearis_contig86.16212.1 ID=prot_C-linearis_contig86.16212.1|Name=mRNA_C-linearis_contig86.16212.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
MQPYLCLTHTALRTGRQKGMPKHQNAYCGRFDSKRLSEGRGGLGYFTSDS
AGKVHTGIYKHSSIRHGLQAERMSDDNPQSFLPRFDVGRWSPLPRAVLTT
LARTRF*
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mRNA from alignment at C-linearis_contig86:213441..213771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16212.1 ID=mRNA_C-linearis_contig86.16212.1|Name=mRNA_C-linearis_contig86.16212.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=331bp|location=Sequence derived from alignment at C-linearis_contig86:213441..213771+ (Chordaria linearis ClinC8C monoicous)
CCGTTTTGAGATGCAGCCCTACCTATGCCTGACTCACACGGCTTTGAGAA
CGGGGCGTCAGAAAGGTATGCCAAAACATCAAAATGCCTACTGCGGGAGG
TTTGACTCAAAGAGACTCTCGGAAGGACGGGGTGGCCTAGGATACTTCAC
ATCGGATAGTGCAGGCAAAGTGCACACTGGCATATACAAACATAGCTCAA
TCAGACACGGTTTACAAGCGGAACGAATGAGCGACGACAATCCTCAATCT
TTTTTGCCGCGCTTCGATGTTGGCCGCTGGTCGCCGTTGCCACGAGCCGT
GCTTACCACTTTGGCGAGAACCAGGTTCTAA
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Coding sequence (CDS) from alignment at C-linearis_contig86:213441..213771+

>mRNA_C-linearis_contig86.16212.1 ID=mRNA_C-linearis_contig86.16212.1|Name=mRNA_C-linearis_contig86.16212.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig86:213441..213771+ (Chordaria linearis ClinC8C monoicous)
ATGCAGCCCTACCTATGCCTGACTCACACGGCTTTGAGAACGGGGCGTCA
GAAAGGTATGCCAAAACATCAAAATGCCTACTGCGGGAGGTTTGACTCAA
AGAGACTCTCGGAAGGACGGGGTGGCCTAGGATACTTCACATCGGATAGT
GCAGGCAAAGTGCACACTGGCATATACAAACATAGCTCAATCAGACACGG
TTTACAAGCGGAACGAATGAGCGACGACAATCCTCAATCTTTTTTGCCGC
GCTTCGATGTTGGCCGCTGGTCGCCGTTGCCACGAGCCGTGCTTACCACT
TTGGCGAGAACCAGGTTCTAAATGCAGCCCTACCTATGCCTGACTCACAC
GGCTTTGAGAACGGGGCGTCAGAAAGGTATGCCAAAACATCAAAATGCCT
ACTGCGGGAGGTTTGACTCAAAGAGACTCTCGGAAGGACGGGGTGGCCTA
GGATACTTCACATCGGATAGTGCAGGCAAAGTGCACACTGGCATATACAA
ACATAGCTCAATCAGACACGGTTTACAAGCGGAACGAATGAGCGACGACA
ATCCTCAATCTTTTTTGCCGCGCTTCGATGTTGGCCGCTGGTCGCCGTTG
CCACGAGCCGTGCTTACCACTTTGGCGAGAACCAGGTTCTAA
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