mRNA_C-linearis_contig86.16205.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: D8LSE1_ECTSI (Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE1_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 3.540e-150 Identity = 244/336 (72.62%), Postives = 272/336 (80.95%), Query Frame = 2
Query: 5 MLGITKIAFALVALTASXXXXXXXXXXGSLRWVKTRSA-AAAPGAGAIARVGG---DELKPVDAVLLAARGGVVKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
M G+ KI+ A V L AS GS WV+ RS AA+ GA G LKPV+AVL A RGG+VK PPGLYANAV++GA+KA P D +LLGI+SGFHIGFGGLLA+TVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAAL+EGKAT+ + NW SW GNL+GSVLLAKLV+ AGINAAPGTA AIAVSKV++P TFLKGI+CNWMVCMAVWVA+GA+SLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLG+FSGAS +V W D+F+KNILPVTLGNI GG + QT+PYAAVYGSLLK
Sbjct: 1 MFGLAKISVAAVVLVASTAAAGPSP--GS-HWVQQRSTPAASAGAAXXXNAGALRAGVLKPVEAVLQAPRGGLVKPPPGLYANAVDLGARKAAASPVDIVLLGILSGFHIGFGGLLAVTVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATV----ANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVSSPFLPTFLKGIVCNWMVCMAVWVAAGATSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDLFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 329
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A835ZQ31_9STRA (Formate/nitrite transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ31_9STRA) HSP 1 Score: 317 bits (813), Expect = 6.470e-100 Identity = 160/260 (61.54%), Postives = 192/260 (73.85%), Query Frame = 2
Query: 221 PPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
P LYANAV +G KKA PA L +VSG HI FG LLA+ VG ++ +K+ NPGLQKL FG FGLPFGLFMVLVAGGELFTGN A+V+AA EGKA++ +W S+IGN +G++L+ KL++ AG+ P AT IAV+KVA P TFL+GI+CNWMVCMAVWVASG S+L EKYLAM+LPVSAFVAFGAEHS+ANM L+PLGM GA V+W D KN+LPVTLGNI GG + Q PY +VYG+L K
Sbjct: 3 PAALYANAVAIGEKKAAAAPATIFKLSVVSGAHIAFGALLALVVGANVANMKTLNPGLQKLFFGAFGLPFGLFMVLVAGGELFTGNVAMVSAAFFEGKASLE----GLLKSWSISFIGNFIGTILVCKLIVAAGMLTVPAIATEIAVAKVAKPFLTTFLRGIVCNWMVCMAVWVASGCSTLGEKYLAMVLPVSAFVAFGAEHSIANMALIPLGMAGGAK--VKWIDFLTKNLLPVTLGNIVGGALCQAAPYGSVYGTLGK 256
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: D7G4R6_ECTSI (Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R6_ECTSI) HSP 1 Score: 292 bits (747), Expect = 6.540e-89 Identity = 151/281 (53.74%), Postives = 192/281 (68.33%), Query Frame = 2
Query: 155 GGDELKPVDAVLLAARGGVVKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLL 997
GG PV AV A VK PP +Y NAV++G KKA+G A L+GI+SG HIGFG LLA+++GG+ P + + NPGLQK++FG FGLPFGLFM +V GGELFTGNTA+VTAA+IEGKA+I NW FS++GN VGS+LL L + G+ PG+A IA +K + Q F +GI+CNW+VCMAVW++ AS K+ A+ LP+SAFVA G +HSVANMFL+PLGM GA V W+ + N+LPVTLGNI GG V Y+ +GSL
Sbjct: 69 GGSTTAPVSAVASAPS---VKPPPQMYQNAVDIGQKKASGSVAKLFLMGIISGCHIGFGALLAVSIGGNCPGLLATNPGLQKIIFGAFGLPFGLFMTVVGGGELFTGNTAVVTAAVIEGKASIG----GLLKNWVFSYLGNFVGSLLLVFLAVQGGVVVNPGSAMGIATAKTSLTFVQAFARGILCNWLVCMAVWMSVSASDAAGKFFAIFLPISAFVALGLDHSVANMFLIPLGMALGAG--VTWSQFLLANLLPVTLGNIVGGAVAVCGLYSGAFGSLF 340
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A6S9B5G3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9B5G3_9STRA) HSP 1 Score: 274 bits (700), Expect = 1.630e-82 Identity = 144/263 (54.75%), Postives = 177/263 (67.30%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+K P LY AV GA KA G LGIVSG HIGFG LA+TVGG+ PAI SANPGLQK++ G FGLPFGL M LV GGELFTGNTALVTAA+ EGKAT + D NW S+ GN VGS+LLA L +G A A+A +K + P F++GI+CNW+VCMAV++ASG +SL K A+ P+SAFVA G +HSVANMF++PL + GA TV+ D+F+KN++PVTLGNI GG F P+ +G K
Sbjct: 48 LKPPAALYEGAVAAGAAKAAGSWEKIFKLGIVSGCHIGFGAYLALTVGGACPAIASANPGLQKIILGAFGLPFGLIMTLVTGGELFTGNTALVTAAVAEGKATKQ----DLAKNWIASYAGNFVGSLLLAYLAFKSGTLGDAPAAVAVATAKCSLPFDVAFVRGILCNWLVCMAVYMASGCTSLVGKMTAVWFPISAFVALGLDHSVANMFMIPLAILRGAEITVK--DMFVKNLIPVTLGNIVGGAFFVMAPFGTTFGKWFK 304
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A7S0GAY3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY3_9STRA) HSP 1 Score: 270 bits (689), Expect = 7.400e-81 Identity = 144/263 (54.75%), Postives = 173/263 (65.78%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+KAPP LYA AV G KA LGIVSG HI FG LA+ VGG+ P I +ANPGLQK++FG FGLPFGL M LV G ELFTGNTALVTAA +EGK T + D +W S++GN VGS+LLA L G A AIA +K + P F++GI+CNW+VCMAV +ASG SS+ K A+ P+SAFVA G +HSVANMFL+PLGM GA T+ D+FIKN++PVTLGNI GG V PY +GS
Sbjct: 51 LKAPPALYAGAVAAGTAKALAPAEKIFTLGIVSGAHIAFGAFLALAVGGACPEIAAANPGLQKIIFGAFGLPFGLIMTLVTGAELFTGNTALVTAARMEGKITTK----DLIKSWVSSYLGNFVGSLLLAYLAFNGGTLGNGPAAAAIATAKCSLPFKVAFIRGILCNWLVCMAVLMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFLIPLGMMRGAEITIA--DMFIKNLIPVTLGNIVGGAVCVMAPYGKTFGSWFS 307
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A7S2UWW2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWW2_9STRA) HSP 1 Score: 268 bits (684), Expect = 4.130e-80 Identity = 140/264 (53.03%), Postives = 181/264 (68.56%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAG-INAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+K PP LY AV GA KA+G A LGIVSG HIGFG LAI++GG+ P I +ANPG+QK++ G FGLPFGL M L GGELFTGNTALVTAA++EGK T + D NW S++GN VGS++LA L +G + PG A IA +KV+ P F++GI+CNW+VCMAV++ASG SS+ K A+ P+SAFVA G +HSVANMF++PLGM GA T+ +F+KN++PVTLGNI GG + P+ +G +
Sbjct: 52 LKPPPALYEGAVAAGAAKASGSWAKIFKLGIVSGCHIGFGAYLAISIGGACPQIAAANPGVQKMILGAFGLPFGLIMTLATGGELFTGNTALVTAAVLEGKTTKK----DLAKNWISSYLGNFVGSLILAYLAFKSGTLGDLPG-AVNIATAKVSLPFTVAFVRGILCNWLVCMAVYMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFIIPLGMLRGADITIG--QMFLKNLIPVTLGNIVGGALCVMAPFGTTFGKWFQ 308
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A7S2AA06_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AA06_TRICV) HSP 1 Score: 267 bits (683), Expect = 5.970e-80 Identity = 139/263 (52.85%), Postives = 176/263 (66.92%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+K PP LY AV G KA+G LG+VSG HIGFG LAITVGG+ P I +ANPGLQK++ G FGLPFGL M LV GGELFTGNTALV AA +EGK T + D NW S+IGN VGS++LA L +G + AIA +K + P F++GI+CNW+VCMAV++ASG S++ K A+ P+SAFVA G +HSVANMF++PL M GA T+ D+F+KN++PVTLGNI GG++ P+ GS K
Sbjct: 53 LKPPPALYQGAVAAGVAKASGSWEKIFKLGVVSGCHIGFGAYLAITVGGACPQIAAANPGLQKIILGAFGLPFGLIMTLVTGGELFTGNTALVGAARLEGKTTTK----DLVKNWVASYIGNFVGSLILAYLAFKSGTLGNAPASVAIATAKCSLPFDVAFVRGILCNWLVCMAVYMASGCSTMIGKMTAVWFPISAFVALGLDHSVANMFMIPLAMMRGAEITIA--DMFVKNLIPVTLGNIVGGLLCVMAPFGTTMGSWFK 309
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: B8BXN4_THAPS (Formate/nitrite transporter family member n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXN4_THAPS) HSP 1 Score: 263 bits (672), Expect = 6.510e-79 Identity = 139/263 (52.85%), Postives = 175/263 (66.54%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+KAPP +Y AV GA KA+ LGI +G HIGFG LAITVGG+ P I ANPGLQK++FG FGLPFGL M LV G ELFTGNTALVTAA++EGK T + D NW S+ GN+VGS++LA L +G + AIA +K + P F++GI+CNW+VCMAV++ASG +SL K +A+ P+SAFVA G +HSVANMF++PLGM GA TV D KN++PVTLGNI GG + Y + +G K
Sbjct: 11 LKAPPAIYEGAVAAGAAKASASWEKIFKLGIAAGCHIGFGSYLAITVGGACPQIAEANPGLQKIIFGAFGLPFGLIMTLVTGAELFTGNTALVTAAVMEGKTTTK----DLIKNWVASYAGNVVGSLILAYLAFKSGTLGNAPASVAIATAKCSLPFETAFVRGILCNWLVCMAVYMASGCASLAGKMVAVWFPISAFVALGLDHSVANMFIIPLGMMRGAQITVG--DFITKNLIPVTLGNIVGGALCVMGIYGSAFGKWFK 267
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A448ZQ46_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ46_9STRA) HSP 1 Score: 263 bits (673), Expect = 1.790e-78 Identity = 141/263 (53.61%), Postives = 176/263 (66.92%), Query Frame = 2
Query: 212 VKAPPGLYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
+K PP LY AV G KA+ D LGIVSG HI FG LAITVGG+ I + NPGLQK++FG FGLPFGL M LV GGELFTGNTALVTAA EGK + D NW S+ GNLVGS+LLA L +G AA + AIA +K + P F++GI+CNW+VCMAV++ASG +S+ K A+ P+SAFVA G +HSVANMF++PLGM GA T++ +KN++PVTLGNI GG + P+ +V+GS K
Sbjct: 54 LKPPPSLYQGAVAAGVGKASKTWGDIFKLGIVSGCHIAFGAYLAITVGGACSGIAAENPGLQKIIFGSFGLPFGLIMTLVTGGELFTGNTALVTAAYKEGKIS----GKDLIKNWVSSYTGNLVGSLLLAYLAYKSGTLAASPASAAIATAKCSLPWDVAFVRGILCNWLVCMAVYMASGCASMAGKMTAVYFPISAFVALGLDHSVANMFIIPLGMLRGADITIK--AFLMKNLIPVTLGNIVGGALCVMAPFGSVFGSWGK 310
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Match: A0A7S2DZW8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZW8_9STRA) HSP 1 Score: 260 bits (664), Expect = 3.070e-77 Identity = 136/257 (52.92%), Postives = 173/257 (67.32%), Query Frame = 2
Query: 230 LYANAVEVGAKKATGKPADTLLLGIVSGFHIGFGGLLAITVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALIEGKATIRRDATDATDNWCFSWIGNLVGSVLLAKLVMLAGINAAPGTATAIAVSKVATPCCQTFLKGIICNWMVCMAVWVASGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGMFSGASDTVRWTDIFIKNILPVTLGNIFGGVVFQTLPYAAVYGSLLK 1000
LY AV GA KA+G LG+VSG HI FG LA+TVGG+ P I +NPGLQK++ G FGLPFGL M LV+GGELFTGNTALVTAA+ EGKAT + D NW S++GN VGS+LLA L + A A+A +K + P F++GI+CNW+VCMAV++ASG SS+ K A+ P+SAFVA G +HSVANMF++PLG+ GA T+ D+F KN++PVTLGNI GG + P+ +GS K
Sbjct: 53 LYQGAVAAGAAKASGSFEKIFKLGVVSGCHIAFGAYLALTVGGACPQIAQSNPGLQKIILGAFGLPFGLIMTLVSGGELFTGNTALVTAAVNEGKATKK----DLAKNWIASYLGNFVGSLLLAFLAYKSQTLGTGPAAVAVATAKCSLPFEVAFVRGILCNWLVCMAVYMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFMIPLGIMRGAEITIA--DMFTKNLIPVTLGNIVGGALCVMAPFGTTFGSWFK 303 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16205.1 >prot_C-linearis_contig86.16205.1 ID=prot_C-linearis_contig86.16205.1|Name=mRNA_C-linearis_contig86.16205.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=334bp MMLGITKIAFALVALTASPAAAAAPAAPGSLRWVKTRSAAAAPGAGAIARback to top mRNA from alignment at C-linearis_contig86:177846..184366+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16205.1 ID=mRNA_C-linearis_contig86.16205.1|Name=mRNA_C-linearis_contig86.16205.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6521bp|location=Sequence derived from alignment at C-linearis_contig86:177846..184366+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:177846..184366+ >mRNA_C-linearis_contig86.16205.1 ID=mRNA_C-linearis_contig86.16205.1|Name=mRNA_C-linearis_contig86.16205.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at C-linearis_contig86:177846..184366+ (Chordaria linearis ClinC8C monoicous)back to top |