mRNA_C-linearis_contig86.16202.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: D8LSE3_ECTSI (DSBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE3_ECTSI) HSP 1 Score: 315 bits (806), Expect = 4.820e-103 Identity = 170/281 (60.50%), Postives = 196/281 (69.75%), Query Frame = 3
Query: 117 LLLGSLLTTCSSLIATNCRLREKLNMS-----------TVQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVRAAGPXXXXXXXXXXXXXXXXXXXXXXXRPAEVVLKGAVGTDELMRAFATVSR 926
L +G LL C L+ CR +L+MS +V+V+V SDFACPWCYVGKARL AA++AFE S+ D GRA +V VSFSPYMID TQP GE+YL YN+RRWGGDGWTAS+KRS+ KDGC+FAKW TWPNSLLAHRLQ A AGKGDQVNSLVFQTIYERGGNASDLETLVSLA EAGL PA+A AYL SREGEED+L++D AKTEL V GVP F+VR G +E+VL GAV D+L+RAF +V R
Sbjct: 11 LCIGFLLNECVGLVLFPCRATLRLDMSAAASSSVRDADSVRVQVVSDFACPWCYVGKARLGAAIEAFER-SSTSDGKGRA-RVQVSFSPYMIDPRTQPGGEEYLVYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEEDVLQDDHTAKTELGVTGVPCFIVRGTGGRESGSGTPDDAVGGGSVGGAGQ---SEIVLNGAVAPDKLLRAFESVRR 286
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A8J9S664_9CHLO (Uncharacterized protein YwbO n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S664_9CHLO) HSP 1 Score: 188 bits (478), Expect = 1.030e-54 Identity = 93/190 (48.95%), Postives = 121/190 (63.68%), Query Frame = 3
Query: 198 TVQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVV 767
T+ +++ SD ACPWCYVGK RLD A+ D GRA V++ PY+ID GT GEDYLAYN+RRWG D WT S++RS DG F W WP++L AHRL +LA K G+ + L+FQ IYERG N SD TL +L +E GL + YL S EG+E++L+ D RAK L ++ VPYF++
Sbjct: 6 TIVIDIWSDLACPWCYVGKRRLDKAI---------DQCRGRA-DFKVNWHPYIIDHGTNRAGEDYLAYNKRRWGSDSWTQSLRRSGLPDGATFKDWKWWPHTLKAHRLVLLAEKKGRAAEAEELLFQAIYERGQNVSDATTLTALGQEVGLTGVEE--YLESAEGQEEVLQEDARAKQVLGIQSVPYFLI 183
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A1Y1IQU1_KLENI (DSBA domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQU1_KLENI) HSP 1 Score: 186 bits (472), Expect = 9.710e-54 Identity = 91/194 (46.91%), Postives = 123/194 (63.40%), Query Frame = 3
Query: 189 NMSTVQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVR 770
N V ++ SD ACPWCYVGKARLD A++ E S AG+ KV V++ PYMID GT P GEDYLAYN+RRWG GWT S++ S +++G +F W WPN+L AHRL LA GKG + ++F+ YE G N S L+ L+ +E LP + YL S +G ++ + DR AK+ + +R VPYFV++
Sbjct: 8 NAVKVHIDAWSDIACPWCYVGKARLDQAIRNVEMRS-----AGKPLKVEVAWHPYMIDLGTNPAGEDYLAYNKRRWGSGGWTQSLRGSGARNGLKFKDWNHWPNTLHAHRLVDLASSVGKGPEAEDVLFRRTYELGQNVSSLDVLIEAGQELDLPGVEE--YLRSDQGLAEVKQQDRDAKSRMQIRSVPYFVLQ 194
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: UPI0009E6346F (uncharacterized protein LOC110051917 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E6346F) HSP 1 Score: 182 bits (462), Expect = 2.280e-52 Identity = 100/243 (41.15%), Postives = 135/243 (55.56%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAG--KAGKGD-QVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVRAAGPXXXXXXXXXXXXXXXXXXXXXXXRPAEVVLKGAVGTDELMRAFATV 920
+ ++V SD +CPWCYVGKARLD A++ F S + V++ PY+ID T PLGEDY+AYN RRWGGDGWT S++++ +DG EF W TWPNSL HRL LAG K +G + L+F IYE G N SD++TL+ A+E GL + YL S + +L D RAK+ + + GVPYFV+ + + V L GA GT+ + AF+ V
Sbjct: 2 INIDVYSDLSCPWCYVGKARLDKAIQKFTDAS-----------ITVNWHPYIIDKNTAPLGEDYMAYNTRRWGGDGWTRSLRQAGQQDGLEFKNWKTWPNSLHGHRLIHLAGIQKGPEGQAKAKDLLFHMIYEDGKNVSDVDTLIEAAKELGLEGG--KNYLKSSHDVDLVLSEDSRAKSHMKISGVPYFVISS-----------------------DDKQKKAVSLSGAQGTERFLAAFSHV 208
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A7S3XRH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRH4_HETAK) HSP 1 Score: 183 bits (464), Expect = 2.390e-52 Identity = 97/247 (39.27%), Postives = 136/247 (55.06%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILA--------GKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREG-EEDILKNDRRAKTELNVRGVPYFVVRAAGPXXXXXXXXXXXXXXXXXXXXXXXRPAEVVLKGAVGTDELMRAFA 914
++++V SDFACPWCYVGKAR++AA+ N +D + V V + PY ID TQP GE+YL+YN RRWGGDGWT S++R+ + G FA W TWPN+L AHRL L G + ++ +F+ IYE GGNAS +E L+ +A G+ R + + +G + + DR AKTEL+V GVP+F+++ G + L GA GTDE + AF+
Sbjct: 10 LKIDVISDFACPWCYVGKARMEAAIAQLR--ENNEDAS-----VEVRWHPYQIDAATQPDGEEYLSYNRRRWGGDGWTHSLRRAGRQSGLGFASWATWPNTLHAHRLMQLVQDLEDDGQGSSDLQGKIKDGIFKCIYEEGGNASTIEQLIQIATSCGMDAEVVRTAMETDDGLTSSVKQRDRYAKTELDVSGVPFFIIQKGGNEEGGSGGR------------------QTALSGAAGTDEFLSAFS 231
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A388LLX2_CHABU (DSBA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLX2_CHABU) HSP 1 Score: 182 bits (461), Expect = 4.380e-52 Identity = 92/189 (48.68%), Postives = 121/189 (64.02%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVV 767
V V+V SD ACPWCYVGKARLD+A+ + EG G+A KV V + YMID+ T+ GE+YLAYN RRWG DGWT S++ SA +DG F W WPN+L AHRL LA K G+G + +FQ YE GGN S ++ + S+A++ GL R L E +++ DRRAK +LN+ VP+F+V
Sbjct: 14 VHVDVWSDIACPWCYVGKARLDSAISSLEG-------EGKA-KVDVRWHAYMIDSRTKSNGEEYLAYNRRRWGSDGWTHSLRSSARRDGLAFGDWKWWPNTLHAHRLVHLAEKVGRGSEAKDRLFQKTYEEGGNVSLVDVVCSIADDMGLEGG--RQALERGEAMAEVIAEDRRAKEKLNIHSVPHFIV 192
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A176WK32_MARPO (DSBA domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WK32_MARPO) HSP 1 Score: 179 bits (454), Expect = 4.550e-51 Identity = 86/187 (45.99%), Postives = 117/187 (62.57%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYF 761
V ++ SD +CPWCYVGK RLD A+ + + + P++ V + PYMID T+P GE+YLAYN+RRWG D WT ++RS +K+G +F W WPN+L AHRL +LA G+G L+ YE G N S L+ L+S+A E GLP A+ YL S +G ED+L D RAK+ L + VP+F
Sbjct: 11 VNIDAWSDISCPWCYVGKTRLDQAILNIQAKT-------QTPRIVVKWHPYMIDKKTRPEGEEYLAYNKRRWGSDSWTQDLRRSGAKNGLKFGNWRWWPNTLNAHRLILLAETYGRGPDAKQLLLLKTYEEGANVSKLDVLISVANELGLPGAEE--YLKSDQGTEDVLAMDSRAKSALGIHSVPHF 188
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: E1ZIP9_CHLVA (DSBA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIP9_CHLVA) HSP 1 Score: 174 bits (442), Expect = 3.140e-49 Identity = 86/193 (44.56%), Postives = 112/193 (58.03%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKAGKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVRAAG 779
V+V+V SD +CPWC+VGK R+D A+ E V + Y+ID T P GE YLAYN RRWGGDGWT ++RS S DG FA WV WP+SL H+L +LA + GKG + L+ + YE+G N SD+ TLV E GL + R +L G +L++D K EL + GVPYF+V G
Sbjct: 7 VRVDVWSDISCPWCWVGKKRMDQALAQLEQVD-----------FEVVYHAYVIDHKTDPGGEQYLAYNRRRWGGDGWTGDLRRSGSPDGATFADWVWWPSSLKGHQLLLLAQEQGKGREAKDLLLRYTYEQGENVSDIGTLVRAGRELGLDEGEVRRHLAEDRGRAAVLRDDETGKRELGISGVPYFIVGPGG 188
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: UPI001CF5FBC5 (uncharacterized protein YwbO-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5FBC5) HSP 1 Score: 168 bits (425), Expect = 7.800e-47 Identity = 96/246 (39.02%), Postives = 134/246 (54.47%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAGKA----GKGDQVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVRAAGPXXXXXXXXXXXXXXXXXXXXXXXRPAEVVLKGAVGTDELMRAFATVSR 926
+ ++V SD +CPWCYVGK RLD A++ F+ S + VS+ PY+ID T GE+Y+AYN RRWG DGWT S++R + G EF W WPNSL HRL LAGK G+G + ++F+ IYE G N SD+ TL+ A+E L A+ YL+S + + I D RAK+E+ + GVPYFV+ + + + L GA GT++ + AF VS+
Sbjct: 3 INIDVYSDLSCPWCYVGKRRLDKAIQQFKTTS-----------ISVSWHPYIIDRKTASNGEEYMAYNTRRWGSDGWTHSLRREGQRLGLEFKNWKIWPNSLHGHRLVHLAGKQKGPHGQG-KAKDVLFRMIYEDGMNISDVGTLIQAAKEISLQGAEE--YLNSTDDVDLIWSEDLRAKSEMGISGVPYFVITNSAD-----------------------KRETISLSGAQGTEQFLAAFNHVSK 211
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Match: A0A3M6TB66_POCDA (DSBA domain-containing protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TB66_POCDA) HSP 1 Score: 167 bits (422), Expect = 9.570e-46 Identity = 96/245 (39.18%), Postives = 133/245 (54.29%), Query Frame = 3
Query: 201 VQVEVTSDFACPWCYVGKARLDAAVKAFEGPSNPDDTAGRAPKVHVSFSPYMIDTGTQPLGEDYLAYNERRWGGDGWTASMKRSASKDGCEFAKWVTWPNSLLAHRLQILAG--KAGKGD-QVNSLVFQTIYERGGNASDLETLVSLAEEAGLPPADARAYLHSREGEEDILKNDRRAKTELNVRGVPYFVVRAAGPXXXXXXXXXXXXXXXXXXXXXXXRPAEVVLKGAVGTDELMRAFATVSR 926
+ V+V SD +CPWCYVGK RLD A++ + AG + V + PY+ID T +GEDY+AYN RRWGGDGWT S++R+ +DG F W TWPNSL HRL LAG K +G + L+ + IYE G N SD TL+ A+E GL A+ YL S + +L D AK++L + GVPYFV+ + + L GA GT++ + AF+ +++
Sbjct: 55 ITVDVYSDLSCPWCYVGKRRLDKAIQQYT-------EAG----ITVHWHPYIIDKNTAEMGEDYMAYNTRRWGGDGWTRSLRRAGQQDGLGFKNWKTWPNSLHGHRLIHLAGMQKGPEGQGKAKDLLLRMIYEDGKNVSDTGTLIEAAKELGLEGAED--YLKSSSDVDLVLSQDSFAKSQLRISGVPYFVISSDNRDKKT-----------------------ISLSGAQGTEQFLAAFSHMTK 263 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16202.1 >prot_C-linearis_contig86.16202.1 ID=prot_C-linearis_contig86.16202.1|Name=mRNA_C-linearis_contig86.16202.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=279bp MLWWNALLLGSLLTTCSSLIATNCRLREKLNMSTVQVEVTSDFACPWCYVback to top mRNA from alignment at C-linearis_contig86:134147..136375- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16202.1 ID=mRNA_C-linearis_contig86.16202.1|Name=mRNA_C-linearis_contig86.16202.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2229bp|location=Sequence derived from alignment at C-linearis_contig86:134147..136375- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:134147..136375- >mRNA_C-linearis_contig86.16202.1 ID=mRNA_C-linearis_contig86.16202.1|Name=mRNA_C-linearis_contig86.16202.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at C-linearis_contig86:134147..136375- (Chordaria linearis ClinC8C monoicous)back to top |