mRNA_C-linearis_contig86.16196.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16196.1
Unique NamemRNA_C-linearis_contig86.16196.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:118563..119033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.6782851-CDS-C-linearis_contig86:118562..1190091622930651.6782851-CDS-C-linearis_contig86:118562..119009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 118563..119009 +
1690881178.481982-CDS-C-linearis_contig86:118562..1190091690881178.481982-CDS-C-linearis_contig86:118562..119009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 118563..119009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.6992753-UTR-C-linearis_contig86:119009..1190331622930651.6992753-UTR-C-linearis_contig86:119009..119033Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 119010..119033 +
1690881178.4956386-UTR-C-linearis_contig86:119009..1190331690881178.4956386-UTR-C-linearis_contig86:119009..119033Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 119010..119033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16196.1prot_C-linearis_contig86.16196.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 118563..119009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16196.1

>prot_C-linearis_contig86.16196.1 ID=prot_C-linearis_contig86.16196.1|Name=mRNA_C-linearis_contig86.16196.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=149bp
SPSRPSSALLCLRGRRDPILVRKRKHAAGDFLPEGGGGSQADRPLSLPAV
HLSLLGPSDVCRLQPTAGPTVSPVNVFPLLFHKEIIKTCCQAIISSHHTR
QTNINHKKNPTSSSTYPHEHSSQTFHASTRFARHPTSNARGLAQKHTQ*
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mRNA from alignment at C-linearis_contig86:118563..119033+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16196.1 ID=mRNA_C-linearis_contig86.16196.1|Name=mRNA_C-linearis_contig86.16196.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at C-linearis_contig86:118563..119033+ (Chordaria linearis ClinC8C monoicous)
TCCCCCTCCCGCCCATCATCGGCGCTCCTCTGCTTGAGAGGGAGAAGAGA
CCCAATACTTGTGAGGAAACGGAAACACGCCGCCGGCGACTTTCTACCGG
AAGGGGGCGGGGGTTCACAGGCCGATCGACCTCTGTCTCTGCCCGCCGTC
CATCTATCGCTGTTGGGCCCGAGTGACGTCTGTCGCCTACAGCCTACAGC
AGGGCCGACGGTTTCACCCGTTAATGTATTCCCACTCCTCTTCCACAAAG
AAATAATCAAAACTTGCTGCCAAGCAATCATATCATCACATCACACACGG
CAGACAAACATAAACCACAAAAAAAATCCAACCTCTAGCTCTACCTATCC
TCACGAACATTCCTCTCAAACGTTCCATGCCAGCACTCGTTTTGCACGAC
ACCCTACTTCTAACGCGCGCGGGCTTGCTCAAAAACACACGCAATAGGCT
GCCTGGTTTCGCCACGTCACG
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Coding sequence (CDS) from alignment at C-linearis_contig86:118563..119033+

>mRNA_C-linearis_contig86.16196.1 ID=mRNA_C-linearis_contig86.16196.1|Name=mRNA_C-linearis_contig86.16196.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at C-linearis_contig86:118563..119033+ (Chordaria linearis ClinC8C monoicous)
TCCCCCTCCCGCCCATCATCGGCGCTCCTCTGCTTGAGAGGGAGAAGAGA
CCCAATACTTGTGAGGAAACGGAAACACGCCGCCGGCGACTTTCTACCGG
AAGGGGGCGGGGGTTCACAGGCCGATCGACCTCTGTCTCTGCCCGCCGTC
CATCTATCGCTGTTGGGCCCGAGTGACGTCTGTCGCCTACAGCCTACAGC
AGGGCCGACGGTTTCACCCGTTAATGTATTCCCACTCCTCTTCCACAAAG
AAATAATCAAAACTTGCTGCCAAGCAATCATATCATCACATCACACACGG
CAGACAAACATAAACCACAAAAAAAATCCAACCTCTAGCTCTACCTATCC
TCACGAACATTCCTCTCAAACGTTCCATGCCAGCACTCGTTTTGCACGAC
ACCCTACTTCTAACGCGCGCGGGCTTGCTCAAAAACACACGCAATAGTCC
CCCTCCCGCCCATCATCGGCGCTCCTCTGCTTGAGAGGGAGAAGAGACCC
AATACTTGTGAGGAAACGGAAACACGCCGCCGGCGACTTTCTACCGGAAG
GGGGCGGGGGTTCACAGGCCGATCGACCTCTGTCTCTGCCCGCCGTCCAT
CTATCGCTGTTGGGCCCGAGTGACGTCTGTCGCCTACAGCCTACAGCAGG
GCCGACGGTTTCACCCGTTAATGTATTCCCACTCCTCTTCCACAAAGAAA
TAATCAAAACTTGCTGCCAAGCAATCATATCATCACATCACACACGGCAG
ACAAACATAAACCACAAAAAAAATCCAACCTCTAGCTCTACCTATCCTCA
CGAACATTCCTCTCAAACGTTCCATGCCAGCACTCGTTTTGCACGACACC
CTACTTCTAACGCGCGCGGGCTTGCTCAAAAACACACGCAATAG
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