mRNA_C-linearis_contig86.16192.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16192.1
Unique NamemRNA_C-linearis_contig86.16192.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.070e-14
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = -3 
Query:  869 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRPKRD 991
            KLYIKQYYCVEAAVHQRIVRSRSAE RRNRD PVRHRPKRD
Sbjct:   66 KLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = -3 
Query:  869 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRPKRD 991
            KLYIKQYYCVEAAVHQRIVRSRSAE RRNR+ P R RPKR+
Sbjct:   66 KLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A7S2DH20_9EUKA (40S ribosomal protein S26 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DH20_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 9.220e-8
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  878 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRP 991
            K+YIKQYYCVEAA+HQR+VR RS E R+NR+ P R+RP
Sbjct:   73 KIYIKQYYCVEAAIHQRVVRVRSVESRKNREPPQRNRP 110
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A485LRR7_9STRA (40S ribosomal protein S26 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRR7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = -3 
Query:  872 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRPKR 991
            K+YIK YYC+EAA+HQRIVR RS E RRNR+ P R RPK+
Sbjct:   97 KIYIKNYYCIEAAIHQRIVRVRSVEGRRNREPPARIRPKK 136
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.180e-7
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = -3 
Query:  887 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVR 991
            K+YIKQYYC+EAAVHQRIVRSRS E RRNR+ P R
Sbjct:   89 KIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPAR 123
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.550e-7
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = -3 
Query:  878 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRP 991
            KLYIKQYYC+EAAVHQRIVR RSA  R+NR  PVR RP
Sbjct:   66 KLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103
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BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.310e-7
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  881 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHR 991
            KLYIKQYY VEAAVHQRIVRSRS E RRNR+ P R R
Sbjct:   80 KLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116
[Close]
BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A8J5XGW0_DIALT (40S ribosomal protein S26 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGW0_DIALT)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-7
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = -3 
Query:  872 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRPKR 991
            K+YIK YYC+EAA+HQR+VR RS E RR R+ PVR RP R
Sbjct:   66 KIYIKNYYCIEAAIHQRVVRVRSREARRIREPPVRPRPPR 105
[Close]
BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A418B0B4_9STRA (40S ribosomal protein S26 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B0B4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.130e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = -3 
Query:  872 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRPKR 991
            K+YIK YY +EAA+HQRIVR RSAE RRNR+ P R RPK+
Sbjct:  104 KIYIKNYYSIEAAIHQRIVRVRSAEGRRNREPPARIRPKK 143
[Close]
BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Match: A0A7S0HCR9_9EUKA (40S ribosomal protein S26 (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCR9_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.000e-6
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  878 KLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDAPVRHRP 991
            K+YIKQYY VEAA+HQR+VR RS E+R+NR+ P R+RP
Sbjct:   76 KIYIKQYYSVEAAIHQRVVRVRSVELRKNREPPQRNRP 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF3_ECTSI1.070e-1495.1240S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=... [more]
A0A835YLU3_9STRA1.830e-1185.3740S ribosomal protein S26 n=1 Tax=Tribonema minus ... [more]
A0A7S2DH20_9EUKA9.220e-871.0540S ribosomal protein S26 n=1 Tax=Haptolina brevif... [more]
A0A485LRR7_9STRA1.070e-770.0040S ribosomal protein S26 n=1 Tax=Aphanomyces stel... [more]
A0A7S2MQP1_9STRA1.180e-780.0040S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID... [more]
A0A7S3MCB3_9STRA2.550e-778.9540S ribosomal protein S26 n=1 Tax=Spumella elongat... [more]
A0A7S2SUN8_9STRA3.310e-781.0840S ribosomal protein S26 n=1 Tax=Rhizochromulina ... [more]
A0A8J5XGW0_DIALT4.790e-767.5040S ribosomal protein S26 n=1 Tax=Diacronema luthe... [more]
A0A418B0B4_9STRA8.130e-770.0040S ribosomal protein S26 n=1 Tax=Aphanomyces inva... [more]
A0A7S0HCR9_9EUKA1.000e-668.4240S ribosomal protein S26 (Fragment) n=1 Tax=Phaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:92802..93794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size993
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16192.1prot_C-linearis_contig86.16192.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 93114..93782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.5943737-UTR-C-linearis_contig86:92801..931131622930651.5943737-UTR-C-linearis_contig86:92801..93113Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 92802..93113 +
1690881178.4497414-UTR-C-linearis_contig86:92801..931131690881178.4497414-UTR-C-linearis_contig86:92801..93113Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 92802..93113 +
1622930651.6295228-UTR-C-linearis_contig86:93782..937941622930651.6295228-UTR-C-linearis_contig86:93782..93794Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 93783..93794 +
1690881178.4713085-UTR-C-linearis_contig86:93782..937941690881178.4713085-UTR-C-linearis_contig86:93782..93794Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 93783..93794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.6174738-CDS-C-linearis_contig86:93113..937821622930651.6174738-CDS-C-linearis_contig86:93113..93782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 93114..93782 +
1690881178.460867-CDS-C-linearis_contig86:93113..937821690881178.460867-CDS-C-linearis_contig86:93113..93782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 93114..93782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16192.1

>prot_C-linearis_contig86.16192.1 ID=prot_C-linearis_contig86.16192.1|Name=mRNA_C-linearis_contig86.16192.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp
MFIALASIGARYGLLNHQAHKTRREGVRSRRAFSTAFFLFFLPDPPVYDG
PAFLALLHINTQQCQPSQQIHRSPIITTSDAITTEAKNRARGQPAPTPGR
KNQTQSTAPTSYGSKHHVCRRQPRCATTPNPPTTKIGRGGRGGGHDRVRS
HVHTGPKKAALVYGNHENSASYCLDRAVRLSGGRPSRAWGGAARGRRGSS
ASRRCGSARSAGAPRPPRSSTA*
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mRNA from alignment at C-linearis_contig86:92802..93794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16192.1 ID=mRNA_C-linearis_contig86.16192.1|Name=mRNA_C-linearis_contig86.16192.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at C-linearis_contig86:92802..93794+ (Chordaria linearis ClinC8C monoicous)
TGAAAGGATCTCACGTCTGTGGTTTTGTTCATGTTCGCCCAGCGCTCGGG
TAAAAAAGCAAGCACGCCACCCATTCCTTCCGCGCAGATGAGGTTTGGGA
ACCAAAACCGCCCCGAAAAAGCAAGTGAAAGCAAGTGAAAGTTGACGTGT
CCTGGAGTGACCATCGACCAAAGAAAAGGAATCCGCCCGTGCAAACACGT
GGTCGAGGCTCCAAACCGTACCGCACATGAACCTAGAAGGTAGGTGGGTG
GGTGGAGGTCTAGGCCGAATATTGCACAGACTCGCATGCTCATCTAGGGC
CTCCCAGAGAACATGTTCATTGCGCTTGCGAGTATTGGAGCACGATACGG
CTTGTTAAACCACCAAGCCCACAAGACACGGAGAGAAGGCGTGCGATCGC
GTAGAGCTTTCAGCACAGCTTTTTTTTTATTTTTCTTGCCGGACCCACCA
GTGTACGATGGGCCGGCTTTCCTGGCACTGCTGCATATCAATACACAGCA
GTGCCAGCCATCTCAGCAGATACACAGATCACCAATCATTACGACCTCTG
ACGCCATCACGACAGAAGCGAAAAACCGCGCACGCGGCCAGCCAGCGCCC
ACGCCAGGGCGAAAAAATCAAACCCAAAGCACAGCACCAACCAGCTACGG
CAGCAAGCACCACGTCTGCAGACGCCAACCCCGGTGCGCTACGACCCCCA
ACCCCCCTACAACAAAAATAGGGAGGGGGGGAAGGGGGGGCGGACACGAC
CGCGTGCGTTCACACGTACACACAGGCCCGAAAAAGGCCGCATTGGTGTA
CGGCAACCACGAAAACTCAGCTAGCTACTGCTTGGATCGCGCGGTCCGTC
TCAGTGGTGGTCGGCCTAGTCGCGCTTGGGGCGGTGCCGCACGGGGGCGT
CGCGGTTCCTCCGCATCTCGGCGCTGCGGGAGCGCACGATCCGCTGGTGC
ACCGCGGCCTCCACGCAGTAGTACTGCTTGATGTACAGCTTGG
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Coding sequence (CDS) from alignment at C-linearis_contig86:92802..93794+

>mRNA_C-linearis_contig86.16192.1 ID=mRNA_C-linearis_contig86.16192.1|Name=mRNA_C-linearis_contig86.16192.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at C-linearis_contig86:92802..93794+ (Chordaria linearis ClinC8C monoicous)
ATGTTCATTGCGCTTGCGAGTATTGGAGCACGATACGGCTTGTTAAACCA
CCAAGCCCACAAGACACGGAGAGAAGGCGTGCGATCGCGTAGAGCTTTCA
GCACAGCTTTTTTTTTATTTTTCTTGCCGGACCCACCAGTGTACGATGGG
CCGGCTTTCCTGGCACTGCTGCATATCAATACACAGCAGTGCCAGCCATC
TCAGCAGATACACAGATCACCAATCATTACGACCTCTGACGCCATCACGA
CAGAAGCGAAAAACCGCGCACGCGGCCAGCCAGCGCCCACGCCAGGGCGA
AAAAATCAAACCCAAAGCACAGCACCAACCAGCTACGGCAGCAAGCACCA
CGTCTGCAGACGCCAACCCCGGTGCGCTACGACCCCCAACCCCCCTACAA
CAAAAATAGGGAGGGGGGGAAGGGGGGGCGGACACGACCGCGTGCGTTCA
CACGTACACACAGGCCCGAAAAAGGCCGCATTGGTGTACGGCAACCACGA
AAACTCAGCTAGCTACTGCTTGGATCGCGCGGTCCGTCTCAGTGGTGGTC
GGCCTAGTCGCGCTTGGGGCGGTGCCGCACGGGGGCGTCGCGGTTCCTCC
GCATCTCGGCGCTGCGGGAGCGCACGATCCGCTGGTGCACCGCGGCCTCC
ACGCAGTAGTACTGCTTGAATGTTCATTGCGCTTGCGAGTATTGGAGCAC
GATACGGCTTGTTAAACCACCAAGCCCACAAGACACGGAGAGAAGGCGTG
CGATCGCGTAGAGCTTTCAGCACAGCTTTTTTTTTATTTTTCTTGCCGGA
CCCACCAGTGTACGATGGGCCGGCTTTCCTGGCACTGCTGCATATCAATA
CACAGCAGTGCCAGCCATCTCAGCAGATACACAGATCACCAATCATTACG
ACCTCTGACGCCATCACGACAGAAGCGAAAAACCGCGCACGCGGCCAGCC
AGCGCCCACGCCAGGGCGAAAAAATCAAACCCAAAGCACAGCACCAACCA
GCTACGGCAGCAAGCACCACGTCTGCAGACGCCAACCCCGGTGCGCTACG
ACCCCCAACCCCCCTACAACAAAAATAGGGAGGGGGGGAAGGGGGGGCGG
ACACGACCGCGTGCGTTCACACGTACACACAGGCCCGAAAAAGGCCGCAT
TGGTGTACGGCAACCACGAAAACTCAGCTAGCTACTGCTTGGATCGCGCG
GTCCGTCTCAGTGGTGGTCGGCCTAGTCGCGCTTGGGGCGGTGCCGCACG
GGGGCGTCGCGGTTCCTCCGCATCTCGGCGCTGCGGGAGCGCACGATCCG
CTGGTGCACCGCGGCCTCCACGCAGTAGTACTGCTTGA
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