mRNA_C-linearis_contig86.16189.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI) HSP 1 Score: 380 bits (975), Expect = 3.540e-123 Identity = 218/386 (56.48%), Postives = 247/386 (63.99%), Query Frame = 2
Query: 260 AKPKLVTAACDFETFFDRYRVRPRGASDSVGHAEGNRLLVSSGREED-----------IAASLRSGGEFGR-GEPNGVLVVEDLQADDVGNILGFCGAIDSPKATSSTTTAAAAARDLSTYISLREGREIDELTASLLARALHSWL-------------------GQEEAGGGAGWQAEELAQGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQP--LPASLRYRGECLVQTELNRCVVSVFDYRVAPGETVRWQEEEVDWGSYLPWHEVVSKVSGGDWEFVPDGLQVWRHYLEWE 1318
A P+LV A DFETFF YR+RPR S+S+ A +LV G++E AA++ G G N VL+VEDL+AD G++LGF GA+DSP AT T L TYI +R GRE+D T LL RALH WL G EEAG A EE EGE+VDWVDT+G VICALPRPVVHS NVLHRGAGVMIR+ KGEVYCHRRTSTKRVFPSMYDMFIGGVSGT+EP TTALRELGEELGLGP S +G S+RYRGECLVQT NRC VSVFDYRV GETV+WQE+EV+WGSY+PW EVVSKVS G+WEFVPDGLQVW+HYL+WE
Sbjct: 17 APPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEAD--GDVLGFFGALDSPTATGPT---------LDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPA--NEEE----EGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRD----------AKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGS-------SPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWE 368
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA) HSP 1 Score: 148 bits (373), Expect = 2.120e-35 Identity = 92/243 (37.86%), Postives = 131/243 (53.91%), Query Frame = 2
Query: 614 DELTASLLARALHSWLGQEEAGGGAGWQAEELAQGEGEMVDWVDTKGSVIC-----ALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG--ETVRWQEEEVDWGSYLPWHEVVSKV----SGGDWEFVPDGLQVWRHYL 1309
DE +L+ RAL + + + Q E + E V WV+ G + LPRP++H NVLH+GAG+++R+ ++R V+ H+R++ KR+FPS+YDMF+GGVS +E TTA REL EELG GP + + +EE R+ + LV+T NRC V V++Y VA G E+ EEV WG ++P EV +V G+W FVPDGL VW +L
Sbjct: 152 DEEVCNLILRALEKNPVRHSS---SATQCEADGDEKVERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSR----------VFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGPAA----------CAAQEES----TDFRFLFDVLVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFL 367
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.000e-33 Identity = 87/242 (35.95%), Postives = 119/242 (49.17%), Query Frame = 2
Query: 725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPK-------GEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVA-PGETVRWQEEEVDWGSYLPWHEVVSKV------------------SGGD----------------WEFVPDGLQVWRHYLEWEKE 1324
E+V+ VD G+ + +PR +VH N+LHRG GVM+ + + DG VY HRRT KRVFPS+YDMF+GGVSG EP TA REL EELGL ++ ++ + + +R C V T NRCVVS+F Y + + + WQEEEV WG+++P+ V S GD W+FVPDGL VW + +W ++
Sbjct: 8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGL---------VRVLRTTNGDDTHQQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 238
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA) HSP 1 Score: 143 bits (361), Expect = 7.820e-33 Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 2
Query: 725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRV-APGETVRWQEEEVDWGSYL--PWHEVVSKVS------GGDW-----------------------EFVPDGLQVWRHYLEW 1315
E+V+ VD+ G+ + +PR +VH N+LHRG G+++ D G +VY H+RTSTKR+FPS+YDMF+GGVS E TA RE+ EELGL D +PL +C++ T NRC+V+VF YR A E ++WQEEEV WG Y+ P E +++S GG W +FVPDGL VW + EW
Sbjct: 303 ELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL------------QRGLDGALSEPL-------FKCVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA) HSP 1 Score: 139 bits (349), Expect = 9.200e-32 Identity = 92/244 (37.70%), Postives = 122/244 (50.00%), Query Frame = 2
Query: 725 EMVDWVDTKGS-VICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDR--EEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPGE--TVRWQEEEVDWGSYLPWHEVVSKVS---------GGDW-------------------------------EFVPDGLQVWRHYLEWEK 1321
E V+ VD GS ++ LPR +VH N+LHRG GV++ +D D VY HRRT TKR+FPS+YDMF+GGVS E TA RE+ EE+GL S G D E+ Q L L +C++ T NRCVV+VF Y E +++WQEEEV WG ++P ++VV K + GG W ++VPDGL VW +L W+K
Sbjct: 200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSD---HDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGL---SKGLQQQLEGGNDDAIDEKTQILSNELF---KCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVP-YDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWKK 433
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.730e-31 Identity = 90/245 (36.73%), Postives = 120/245 (48.98%), Query Frame = 2
Query: 716 GEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPK-------GEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG-ETVRWQEEEVDWGSYLPWHEVVSKV------------------SGGD----------------WEFVPDGLQVWRHYLEWEKE 1324
G E+V+ VD G+ + +PR +VH N+LHRG GVM+ + + DG VY HRRT KRVFPS+YDMF+GGVSG EP TA REL EELGL SD E+ P + + +R C V T NRCVVS+F Y + + + WQ+EEV WG+++ + V S GD W+FVPDGL VW + +W ++
Sbjct: 214 GTSELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGL------VRVLRDGSGSDDEK-TPQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 449
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC) HSP 1 Score: 135 bits (339), Expect = 1.760e-30 Identity = 87/243 (35.80%), Postives = 118/243 (48.56%), Query Frame = 2
Query: 725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRND----KARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG-ETVRWQEEEVDWGSYLPWHEVVS--------------------------------------KVSGGD-WEFVPDGL---QVWRHYLE 1312
E+VD V + G V+ ++PR +VH N+LHRG G++I D + + G P +VYCH+RT TKRVFPS+YDMF+GGVS + E TA RE+ EELG+ ++ PL L +C + T NRCVVS F Y E++ WQEEEV WG ++P+ V K G + W++VPDGL Q W+ YLE
Sbjct: 197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLP---QVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGM-------KRALNLMEEGLDDESPLSQELF---QCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQAWKKYLE 426
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A1Z5JA98_FISSO (Nudix hydrolase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA98_FISSO) HSP 1 Score: 134 bits (338), Expect = 2.620e-30 Identity = 84/238 (35.29%), Postives = 117/238 (49.16%), Query Frame = 2
Query: 722 GEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRV-APGETVRWQEEEVDWGSYLPWHEV----------------------------VSKVSGGD-------------WEFVPDGLQVWRHYL 1309
GEMV+ VD G+V+ +PR +VH N+LHRG G+ + D + P ++Y HRRT TKR+FPS+YDMF+GGVS E TA RE+ EELGL S R+ +P +C+V T NRCVV +F Y + E+++WQ+EEV WGS++P+ + + K+ D W+FVPDGL VW +L
Sbjct: 214 GEMVEMVDRTGAVLGHVPRKLVHQHNILHRGIGIFVTKDDPMEGNQRP---DLYTHRRTETKRIFPSLYDMFVGGVSLAGEDAFITAQREVEEELGL---------------SCRDHLRPERLL-----QCVVCTAYNRCVVDLFVYLMNTKEESIKWQDEEVAWGSFVPYKTIEAAADRSIHRLAERGEWPGRYPPIQSSRMGKLDPEDETIRFEGAMEWTSWDFVPDGLLVWEAWL 428
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE) HSP 1 Score: 138 bits (348), Expect = 3.630e-30 Identity = 84/149 (56.38%), Postives = 97/149 (65.10%), Query Frame = 2
Query: 440 GEPNGVLVVEDLQADDVGNILGFCGAIDSPKATSSTTTAAAAARDLSTYISLREGREIDELTASLLARALHSWL----------GQEEAGGGAGWQAEELA---QGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKAR 847
G N VLVVEDL+AD G+ILGF GA+DSP AT T L TYI +R GRE+D T LL RALH WL G++ GG AG +A + EGE+VDWVDT+G VICALPRPVVHS NVLHRGAGVM+R+ KAR
Sbjct: 43 GVDNRVLVVEDLEAD--GDILGFFGALDSPTATGPT---------LDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGRDWLGGLAGAEAAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMVRDAKAR 180
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT) HSP 1 Score: 125 bits (314), Expect = 1.220e-29 Identity = 78/203 (38.42%), Postives = 104/203 (51.23%), Query Frame = 2
Query: 704 ELAQGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPGETVRWQEEEVDWGSYLPWHEVVSKVSGGDWEFVPDGLQVWRHYLE 1312
E+ E+VD +D + V+ R + N+LHRG G++ + P G +Y HRRT TK VFP MYDMF+GGV G E A RE+ EELG+ E QP P RY L LNR +V+V Y+V +R Q EEV+WGSY+ E+ +K+ G+W FVPDGL++W H E
Sbjct: 3 EMMDPREELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLD----------PDGRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGI------------------EGPQPEPIC-RY----LYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKI--GEWNFVPDGLEIWNHIRE 168 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16189.1 >prot_C-linearis_contig86.16189.1 ID=prot_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=432bp MIRITSATAFFTTVGAALVMMSTSGTAFVATRTASPRLATGSTTARHSPAback to top mRNA from alignment at C-linearis_contig86:65486..69202+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16189.1 ID=mRNA_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3717bp|location=Sequence derived from alignment at C-linearis_contig86:65486..69202+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:65486..69202+ >mRNA_C-linearis_contig86.16189.1 ID=mRNA_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at C-linearis_contig86:65486..69202+ (Chordaria linearis ClinC8C monoicous)back to top |