mRNA_C-linearis_contig86.16189.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16189.1
Unique NamemRNA_C-linearis_contig86.16189.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 3.540e-123
Identity = 218/386 (56.48%), Postives = 247/386 (63.99%), Query Frame = 2
Query:  260 AKPKLVTAACDFETFFDRYRVRPRGASDSVGHAEGNRLLVSSGREED-----------IAASLRSGGEFGR-GEPNGVLVVEDLQADDVGNILGFCGAIDSPKATSSTTTAAAAARDLSTYISLREGREIDELTASLLARALHSWL-------------------GQEEAGGGAGWQAEELAQGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQP--LPASLRYRGECLVQTELNRCVVSVFDYRVAPGETVRWQEEEVDWGSYLPWHEVVSKVSGGDWEFVPDGLQVWRHYLEWE 1318
            A P+LV  A DFETFF  YR+RPR  S+S+  A    +LV  G++E             AA++   G     G  N VL+VEDL+AD  G++LGF GA+DSP AT  T         L TYI +R GRE+D  T  LL RALH WL                   G EEAG  A    EE    EGE+VDWVDT+G VICALPRPVVHS NVLHRGAGVMIR+           KGEVYCHRRTSTKRVFPSMYDMFIGGVSGT+EP  TTALRELGEELGLGP             S   +G       S+RYRGECLVQT  NRC VSVFDYRV  GETV+WQE+EV+WGSY+PW EVVSKVS G+WEFVPDGLQVW+HYL+WE
Sbjct:   17 APPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEAD--GDVLGFFGALDSPTATGPT---------LDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPA--NEEE----EGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRD----------AKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGS-------SPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWE 368          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.120e-35
Identity = 92/243 (37.86%), Postives = 131/243 (53.91%), Query Frame = 2
Query:  614 DELTASLLARALHSWLGQEEAGGGAGWQAEELAQGEGEMVDWVDTKGSVIC-----ALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG--ETVRWQEEEVDWGSYLPWHEVVSKV----SGGDWEFVPDGLQVWRHYL 1309
            DE   +L+ RAL     +  +   +  Q E     + E V WV+  G  +       LPRP++H  NVLH+GAG+++R+ ++R          V+ H+R++ KR+FPS+YDMF+GGVS  +E   TTA REL EELG GP +           + +EE        R+  + LV+T  NRC V V++Y VA G  E+     EEV WG ++P  EV  +V      G+W FVPDGL VW  +L
Sbjct:  152 DEEVCNLILRALEKNPVRHSS---SATQCEADGDEKVERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSR----------VFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGPAA----------CAAQEES----TDFRFLFDVLVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFL 367          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.000e-33
Identity = 87/242 (35.95%), Postives = 119/242 (49.17%), Query Frame = 2
Query:  725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPK-------GEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVA-PGETVRWQEEEVDWGSYLPWHEVVSKV------------------SGGD----------------WEFVPDGLQVWRHYLEWEKE 1324
            E+V+ VD  G+ +  +PR +VH  N+LHRG GVM+ + +   DG              VY HRRT  KRVFPS+YDMF+GGVSG  EP   TA REL EELGL               ++ ++     + + +R  C V T  NRCVVS+F Y +    + + WQEEEV WG+++P+  V                      S GD                W+FVPDGL VW  + +W ++
Sbjct:    8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGL---------VRVLRTTNGDDTHQQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 238          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.820e-33
Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 2
Query:  725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRV-APGETVRWQEEEVDWGSYL--PWHEVVSKVS------GGDW-----------------------EFVPDGLQVWRHYLEW 1315
            E+V+ VD+ G+ +  +PR +VH  N+LHRG G+++  D     G      +VY H+RTSTKR+FPS+YDMF+GGVS   E    TA RE+ EELGL                D    +PL        +C++ T  NRC+V+VF YR  A  E ++WQEEEV WG Y+  P  E  +++S      GG W                       +FVPDGL VW  + EW
Sbjct:  303 ELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL------------QRGLDGALSEPL-------FKCVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.200e-32
Identity = 92/244 (37.70%), Postives = 122/244 (50.00%), Query Frame = 2
Query:  725 EMVDWVDTKGS-VICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDR--EEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPGE--TVRWQEEEVDWGSYLPWHEVVSKVS---------GGDW-------------------------------EFVPDGLQVWRHYLEWEK 1321
            E V+ VD  GS ++  LPR +VH  N+LHRG GV++ +D    D        VY HRRT TKR+FPS+YDMF+GGVS   E    TA RE+ EE+GL   S G          D   E+ Q L   L    +C++ T  NRCVV+VF Y     E  +++WQEEEV WG ++P ++VV K +         GG W                               ++VPDGL VW  +L W+K
Sbjct:  200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSD---HDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGL---SKGLQQQLEGGNDDAIDEKTQILSNELF---KCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVP-YDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWKK 433          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.730e-31
Identity = 90/245 (36.73%), Postives = 120/245 (48.98%), Query Frame = 2
Query:  716 GEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPK-------GEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG-ETVRWQEEEVDWGSYLPWHEVVSKV------------------SGGD----------------WEFVPDGLQVWRHYLEWEKE 1324
            G  E+V+ VD  G+ +  +PR +VH  N+LHRG GVM+ + +   DG              VY HRRT  KRVFPS+YDMF+GGVSG  EP   TA REL EELGL               SD E+  P  + + +R  C V T  NRCVVS+F Y +    + + WQ+EEV WG+++ +  V                      S GD                W+FVPDGL VW  + +W ++
Sbjct:  214 GTSELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGL------VRVLRDGSGSDDEK-TPQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 449          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC)

HSP 1 Score: 135 bits (339), Expect = 1.760e-30
Identity = 87/243 (35.80%), Postives = 118/243 (48.56%), Query Frame = 2
Query:  725 EMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRND----KARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPG-ETVRWQEEEVDWGSYLPWHEVVS--------------------------------------KVSGGD-WEFVPDGL---QVWRHYLE 1312
            E+VD V + G V+ ++PR +VH  N+LHRG G++I  D    +  + G  P   +VYCH+RT TKRVFPS+YDMF+GGVS + E    TA RE+ EELG+                  ++  PL   L    +C + T  NRCVVS F Y      E++ WQEEEV WG ++P+  V                                        K  G + W++VPDGL   Q W+ YLE
Sbjct:  197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLP---QVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGM-------KRALNLMEEGLDDESPLSQELF---QCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQAWKKYLE 426          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A1Z5JA98_FISSO (Nudix hydrolase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA98_FISSO)

HSP 1 Score: 134 bits (338), Expect = 2.620e-30
Identity = 84/238 (35.29%), Postives = 117/238 (49.16%), Query Frame = 2
Query:  722 GEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRV-APGETVRWQEEEVDWGSYLPWHEV----------------------------VSKVSGGD-------------WEFVPDGLQVWRHYL 1309
            GEMV+ VD  G+V+  +PR +VH  N+LHRG G+ +  D   +    P   ++Y HRRT TKR+FPS+YDMF+GGVS   E    TA RE+ EELGL               S R+  +P         +C+V T  NRCVV +F Y +    E+++WQ+EEV WGS++P+  +                            + K+   D             W+FVPDGL VW  +L
Sbjct:  214 GEMVEMVDRTGAVLGHVPRKLVHQHNILHRGIGIFVTKDDPMEGNQRP---DLYTHRRTETKRIFPSLYDMFVGGVSLAGEDAFITAQREVEEELGL---------------SCRDHLRPERLL-----QCVVCTAYNRCVVDLFVYLMNTKEESIKWQDEEVAWGSFVPYKTIEAAADRSIHRLAERGEWPGRYPPIQSSRMGKLDPEDETIRFEGAMEWTSWDFVPDGLLVWEAWL 428          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.630e-30
Identity = 84/149 (56.38%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  440 GEPNGVLVVEDLQADDVGNILGFCGAIDSPKATSSTTTAAAAARDLSTYISLREGREIDELTASLLARALHSWL----------GQEEAGGGAGWQAEELA---QGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKAR 847
            G  N VLVVEDL+AD  G+ILGF GA+DSP AT  T         L TYI +R GRE+D  T  LL RALH WL          G++  GG AG +A       + EGE+VDWVDT+G VICALPRPVVHS NVLHRGAGVM+R+ KAR
Sbjct:   43 GVDNRVLVVEDLEAD--GDILGFFGALDSPTATGPT---------LDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGRDWLGGLAGAEAAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMVRDAKAR 180          
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT)

HSP 1 Score: 125 bits (314), Expect = 1.220e-29
Identity = 78/203 (38.42%), Postives = 104/203 (51.23%), Query Frame = 2
Query:  704 ELAQGEGEMVDWVDTKGSVICALPRPVVHSRNVLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPCSGGXXXXXXXXXSDREEGQPLPASLRYRGECLVQTELNRCVVSVFDYRVAPGETVRWQEEEVDWGSYLPWHEVVSKVSGGDWEFVPDGLQVWRHYLE 1312
            E+     E+VD +D +  V+    R  +   N+LHRG G++  +          P G +Y HRRT TK VFP MYDMF+GGV G  E     A RE+ EELG+                  E  QP P   RY    L    LNR +V+V  Y+V     +R Q EEV+WGSY+   E+ +K+  G+W FVPDGL++W H  E
Sbjct:    3 EMMDPREELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLD----------PDGRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGI------------------EGPQPEPIC-RY----LYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKI--GEWNFVPDGLEIWNHIRE 168          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF1_ECTSI3.540e-12356.48Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A4D9D9L5_9STRA2.120e-3537.86Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S0GKM9_9STRA2.000e-3335.95Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2NSK3_9STRA7.820e-3337.99Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4T0F2_9STRA9.200e-3237.70Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0CKQ7_9STRA2.730e-3136.73Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0R8X5_THAOC1.760e-3035.80Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5JA98_FISSO2.620e-3035.29Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A6H5K4I0_9PHAE3.630e-3056.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E3A4P0_9BACT1.220e-2938.42NUDIX hydrolase n=2 Tax=Planctomycetes bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:65486..69202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue1.3e-102
Seed eggNOG ortholog2880.D8LSF1
Hectar predicted targeting categorychloroplast
EggNOG free text desc.m7G(5')pppN diphosphatase activity
EggNOG OGs2S4X7@2759,COG0494@1
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003460.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2043
Cds size1296
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16189.1prot_C-linearis_contig86.16189.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 65535..68504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.2853432-UTR-C-linearis_contig86:65485..655341622930653.2853432-UTR-C-linearis_contig86:65485..65534Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 65486..65534 +
1690881179.30911-UTR-C-linearis_contig86:65485..655341690881179.30911-UTR-C-linearis_contig86:65485..65534Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 65486..65534 +
1622930653.4152858-UTR-C-linearis_contig86:68504..692021622930653.4152858-UTR-C-linearis_contig86:68504..69202Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 68505..69202 +
1690881179.3981233-UTR-C-linearis_contig86:68504..692021690881179.3981233-UTR-C-linearis_contig86:68504..69202Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 68505..69202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.297226-CDS-C-linearis_contig86:65534..657971622930653.297226-CDS-C-linearis_contig86:65534..65797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 65535..65797 +
1690881179.3239436-CDS-C-linearis_contig86:65534..657971690881179.3239436-CDS-C-linearis_contig86:65534..65797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 65535..65797 +
1622930653.32085-CDS-C-linearis_contig86:66032..661571622930653.32085-CDS-C-linearis_contig86:66032..66157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 66033..66157 +
1690881179.3400195-CDS-C-linearis_contig86:66032..661571690881179.3400195-CDS-C-linearis_contig86:66032..66157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 66033..66157 +
1622930653.3369453-CDS-C-linearis_contig86:66374..668081622930653.3369453-CDS-C-linearis_contig86:66374..66808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 66375..66808 +
1690881179.3545866-CDS-C-linearis_contig86:66374..668081690881179.3545866-CDS-C-linearis_contig86:66374..66808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 66375..66808 +
1622930653.353049-CDS-C-linearis_contig86:67059..672551622930653.353049-CDS-C-linearis_contig86:67059..67255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 67060..67255 +
1690881179.3665366-CDS-C-linearis_contig86:67059..672551690881179.3665366-CDS-C-linearis_contig86:67059..67255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 67060..67255 +
1622930653.37868-CDS-C-linearis_contig86:67810..679801622930653.37868-CDS-C-linearis_contig86:67810..67980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 67811..67980 +
1690881179.3763337-CDS-C-linearis_contig86:67810..679801690881179.3763337-CDS-C-linearis_contig86:67810..67980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 67811..67980 +
1622930653.398366-CDS-C-linearis_contig86:68396..685041622930653.398366-CDS-C-linearis_contig86:68396..68504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 68397..68504 +
1690881179.3866568-CDS-C-linearis_contig86:68396..685041690881179.3866568-CDS-C-linearis_contig86:68396..68504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 68397..68504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16189.1

>prot_C-linearis_contig86.16189.1 ID=prot_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=432bp
MIRITSATAFFTTVGAALVMMSTSGTAFVATRTASPRLATGSTTARHSPA
HARAEETCHDLPGAAAAATTAKPKLVTAACDFETFFDRYRVRPRGASDSV
GHAEGNRLLVSSGREEDIAASLRSGGEFGRGEPNGVLVVEDLQADDVGNI
LGFCGAIDSPKATSSTTTAAAAARDLSTYISLREGREIDELTASLLARAL
HSWLGQEEAGGGAGWQAEELAQGEGEMVDWVDTKGSVICALPRPVVHSRN
VLHRGAGVMIRNDKARQDGAYPPKGEVYCHRRTSTKRVFPSMYDMFIGGV
SGTLEPVATTALRELGEELGLGPCSGGGGGGGGGGGSDREEGQPLPASLR
YRGECLVQTELNRCVVSVFDYRVAPGETVRWQEEEVDWGSYLPWHEVVSK
VSGGDWEFVPDGLQVWRHYLEWEKEAAPPSR*
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mRNA from alignment at C-linearis_contig86:65486..69202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16189.1 ID=mRNA_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3717bp|location=Sequence derived from alignment at C-linearis_contig86:65486..69202+ (Chordaria linearis ClinC8C monoicous)
AATGGCCACCGCCTACAAAACAGCAGTATAGGACGGCCGCCTCTCCCTGA TGATAAGAATAACCTCGGCAACAGCCTTTTTTACCACCGTAGGAGCAGCC CTTGTCATGATGTCGACCTCAGGGACGGCATTTGTGGCTACCAGAACCGC AAGCCCGCGCTTAGCCACGGGTAGCACCACCGCAAGGCACTCTCCGGCAC ACGCCAGAGCGGAGGAAACATGTCATGATTTGCCAGGAGCGGCAGCAGCA GCAACCACTGCCAAGCCCAAGCTCGTCACAGCGGCGTGCGACTTCGAGAC CTTCTTCGACAGGTACCTTTGCACGTCGCCATTGAATTCTCGCCCAGCTC TTTTCTGCATGTGGCACTTGTAGCCACAACCTCGCTGAACATATACATAT AACCCATGCGCACGACGGAACCTGCCATCTCCGTAGAAACGCAGAGCAAT CATCCATTGGCAGCGGAACACTGCCACATGTTTTGCAGTGGAATGTGCTC CTGACTACGCGTGCGCGTGCGCCATTTCCGTATTCCGTTCAACACAGGTA CAGGGTCAGGCCGAGGGGCGCTTCCGACAGCGTCGGGCATGCGGAAGGAA ACCGGTTGTTGGTTTCTAGTGGGCGGGAGGAAGATATTGCCGCTTCCCTT CGGAGTGGTGGTGAGTTCGGACGTCAAAAAGCAGCATGATACACTACGTA GAACGTGTGTGCTGCTCTGCGTTTTAGCTCTTGGACATCTTCCGGAGGCT GTGTGCGTTGGAGCACGGGCACATGGGCAAGTGCGCTTGCCCTTCACTCG GTTCGAATTGGCGTAGACAGCCGTATGTTTCCCATATCGATGCGCGCCGG ATCCCTCTCTCTCGCTCCTTGTGTCACTTCGAACGTCAGGTGGGGAGCCT AACGGCGTGCTGGTTGTCGAGGACCTGCAAGCAGACGACGTTGGTAACAT TCTCGGCTTTTGTGGAGCAATCGACTCGCCAAAGGCCACTTCTTCCACCA CCACCGCCGCCGCCGCCGCCCGAGATCTGAGCACCTACATCTCTCTCCGA GAAGGGCGGGAGATTGATGAGCTAACCGCAAGCCTTCTCGCTCGAGCGCT TCACAGCTGGTTAGGTCAAGAGGAGGCGGGGGGCGGTGCAGGGTGGCAGG CAGAGGAGCTGGCGCAGGGAGAGGGAGAGATGGTGGACTGGGTTGACACG AAGGGGAGTGTCATCTGCGCGCTGCCGAGGCCGGTGGTTCACTCTCGAAA CGTTCTCCATCGCGGCGCGGGGGTCATGATCCGCAACGATAAGGCAAGAC AAGACGGTGCTTACCCGCCTAAAGTTCATCGTATAGTGTACTTTCAGGTG CCGTTTGCACAAGCCTCACACATCTACAGGTGGTTTTGTACCTGGTTTGC CAGCCCCATGTTTCTTGTCCGGCGGGTTGCCCGCCCTATAGCACCGCCCT CAAGGTATGCCGTAGACCAAGTTGCTAGACTACGTCCTTGTTTACTTCCC GTGCACCCGGCCCGGCCAGCAAAACCCGACTTCGCGGCGCTTTCCTCCTA CTGCATGCACCCCCGGACAAGCAGGGGGAGGTGTACTGCCACCGGCGGAC GTCGACGAAGAGGGTGTTCCCTTCCATGTACGACATGTTCATCGGAGGGG TCTCGGGGACCTTGGAGCCGGTGGCAACGACCGCTCTCCGAGAGCTTGGC GAGGAGCTAGGGCTAGGCCCGTGCAGCGGCGGCGGCGGCGGCGGCGGCGG CGGCGGCGGCTCCGATCGCGGTACGCTGGGTTGAGATTGTTCGTATGAGC TTCTTTATTTTATTTTTTCGTGGCGGTAAAAGCGACGAAAGGTGCTATAA TAGCCAGTGGAGTGTGCGGGCAACCTGTTTCACTGGGTCGGGATTGATGA TTGAGTTGAGACGACACGATGGTGTCAGGGGACGGGTGGGATCCTTCGAA GTGAGCGCGTGAGCTTCCTTCCACGTTATTAGTGCCAGCATTCTGGTAAT TTGGCGGAGGTGTTTATCGCCAACTTGCCCTCTCAGCGTTTACCTAGCCA ATCTGGTCAGGGTGCAGGGCGTTCAGTTGATGCACAAGGTCGCGCCCGCG GGGATCGTTGGGGTTCGGTCAGAACAGAACACATGAGGGTTTGCTACGCT GAGGCTGGGTGTTGAGTGGAGGAGCGAGGACGAACGCGGAGAGACGTCAC GTCATCTCGACTTGCCTTGTTTTCGCAGAGAGCGGGGGACAGGCAGGCCC AAACCGGCAGGGCCCCGACAGCCCGCCTGCCTGAAAATGAAACTGCTCTT GTCTTTACGCTGTCGATCAACACAGAGGAGGGCCAGCCGCTGCCGGCATC CCTGCGCTACCGCGGGGAGTGCCTGGTGCAGACGGAGCTCAACCGCTGCG TGGTGTCGGTGTTCGACTACCGCGTGGCTCCGGGGGAAACCGTCCGGTGG CAGGAGGAAGAGGTGGACTGGGGGAGCTATCTGCCGTGGCACGAGGTTAG TGCAATAACTCCTTCAGGTTGACTGGGGGCAGGAAGAAGCTGCAACAACG AGGCGGAGGCGGCTGATTCTTCTAGAGTGCACAAGATACGGTCATGGGGA AAGGCGGAAGCAGCCTGGTGTCCTTTTTTTTTCAGCTGGGGTGGTGATGA GTTTCCGGGCAAACAACAACGTCTCGTGCGCAGTCTTTTTTTATGCTCTT CCGCCAGGCGGACGCGGCTGCTGTAATGATCTGTTTGAGCTGCAGCGTGG CCCAGTTTTGGGCATCAGAAGCGTTGTGCAGACGAACGACGGATTTCCTC CCACGTGTCTCGCCGCGAGAGTGTGCCGTGTGCAGAAGGTTCTTCTTGAC ATGTGTGACGAGCAACCGCGGCCCCAAAACCCGCGACTTTTTTACCACCC CGCACAAACAGGTTGTTTCCAAGGTGTCTGGGGGGGACTGGGAATTCGTC CCCGATGGTCTACAGGTGTGGCGACACTATCTCGAATGGGAAAAGGAAGC GGCACCGCCATCGCGCTAAGGGAAAGGCGGGGGGTTGCTTTCCGTTCCCC ACCGGCTCGGCTCGCATAAATAGTGGGACTTTTTCGCGCTCCGAAAACAT TCCGGGCCAATTGAAAGGGTTAGTATTGCGAGAGGGTAGACTGCTCTTGC TTGGAAGGCAGGATTCGGTTGTGAACGTCTCGCGTGTCGCCACTACCGCT GTTGTTGTGATGGGGTGTCGAGCTTTTGACGACGTTGCGAGTCCAGGCAG TACTTCAGGGGCAAAGCAACCGCGTACATGCGGGCGAACGAAGCGCAACC TTCGCAAAGTTGGTCGAGACAAAATGTTGTCGTGTGGGTCGTGTTGTGTT GTGTTGTGGTGTTTTGTGTCTCTCTTCCTCGCCTTATGTCCTTCCTCTCA CCTCTGGGTTGCCTCGACAACCTACGTTACCCCCCCTGCCGAACCAAGAG AAAACACGAGAGGTTGTTCTGAGGAAACTCGAGGCTTCTTTTTTACGAAG AAACCTTGAGTTTTTTTATCTGGCTCGTCGTGAAATAGGTTTGCGTTGTA AAACTAAGTGATGACCTGATTTTGTCACTACTGTTGTCGCCTCGCGAGAG CGAAGGCAGTCCGTCGTCTTGTGCGGAAGATATTTGGTTTTTGGCGACCG AACCAACCCCGAACCCCCCCCCCAAAAAACAAAATACACAATGGGGCAGG ACAGGACTGCTGGCGAG
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Coding sequence (CDS) from alignment at C-linearis_contig86:65486..69202+

>mRNA_C-linearis_contig86.16189.1 ID=mRNA_C-linearis_contig86.16189.1|Name=mRNA_C-linearis_contig86.16189.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at C-linearis_contig86:65486..69202+ (Chordaria linearis ClinC8C monoicous)
ATGATAAGAATAACCTCGGCAACAGCCTTTTTTACCACCGTAGGAGCAGC
CCTTGTCATGATGTCGACCTCAGGGACGGCATTTGTGGCTACCAGAACCG
CAAGCCCGCGCTTAGCCACGGGTAGCACCACCGCAAGGCACTCTCCGGCA
CACGCCAGAGCGGAGGAAACATGTCATGATTTGCCAGGAGCGGCAGCAGC
AGCAACCACTGCCAAGCCCAAGCTCGTCACAGCGGCGTGCGACTTCGAGA
CCTTCTTCGACAGATGATAAGAATAACCTCGGCAACAGCCTTTTTTACCA
CCGTAGGAGCAGCCCTTGTCATGATGTCGACCTCAGGGACGGCATTTGTG
GCTACCAGAACCGCAAGCCCGCGCTTAGCCACGGGTAGCACCACCGCAAG
GCACTCTCCGGCACACGCCAGAGCGGAGGAAACATGTCATGATTTGCCAG
GAGCGGCAGCAGCAGCAACCACTGCCAAGCCCAAGCTCGTCACAGCGGCG
TGCGACTTCGAGACCTTCTTCGACAGGTACAGGGTCAGGCCGAGGGGCGC
TTCCGACAGCGTCGGGCATGCGGAAGGAAACCGGTTGTTGGTTTCTAGTG
GGCGGGAGGAAGATATTGCCGCTTCCCTTCGGAGTGGTGGTGAGTTCGGA
CGTACAGGGTCAGGCCGAGGGGCGCTTCCGACAGCGTCGGGCATGCGGAA
GGAAACCGGTTGTTGGTTTCTAGTGGGCGGGAGGAAGATATTGCCGCTTC
CCTTCGGAGTGGTGGTGAGTTCGGACGTGGGGAGCCTAACGGCGTGCTGG
TTGTCGAGGACCTGCAAGCAGACGACGTTGGTAACATTCTCGGCTTTTGT
GGAGCAATCGACTCGCCAAAGGCCACTTCTTCCACCACCACCGCCGCCGC
CGCCGCCCGAGATCTGAGCACCTACATCTCTCTCCGAGAAGGGCGGGAGA
TTGATGAGCTAACCGCAAGCCTTCTCGCTCGAGCGCTTCACAGCTGGTTA
GGTCAAGAGGAGGCGGGGGGCGGTGCAGGGTGGCAGGCAGAGGAGCTGGC
GCAGGGAGAGGGAGAGATGGTGGACTGGGTTGACACGAAGGGGAGTGTCA
TCTGCGCGCTGCCGAGGCCGGTGGTTCACTCTCGAAACGTTCTCCATCGC
GGCGCGGGGGTCATGATCCGCAACGATAAGGCAAGACAAGACGGTGCTTA
CCCGCCTAAAGTGGGGAGCCTAACGGCGTGCTGGTTGTCGAGGACCTGCA
AGCAGACGACGTTGGTAACATTCTCGGCTTTTGTGGAGCAATCGACTCGC
CAAAGGCCACTTCTTCCACCACCACCGCCGCCGCCGCCGCCCGAGATCTG
AGCACCTACATCTCTCTCCGAGAAGGGCGGGAGATTGATGAGCTAACCGC
AAGCCTTCTCGCTCGAGCGCTTCACAGCTGGTTAGGTCAAGAGGAGGCGG
GGGGCGGTGCAGGGTGGCAGGCAGAGGAGCTGGCGCAGGGAGAGGGAGAG
ATGGTGGACTGGGTTGACACGAAGGGGAGTGTCATCTGCGCGCTGCCGAG
GCCGGTGGTTCACTCTCGAAACGTTCTCCATCGCGGCGCGGGGGTCATGA
TCCGCAACGATAAGGCAAGACAAGACGGTGCTTACCCGCCTAAAGGGGAG
GTGTACTGCCACCGGCGGACGTCGACGAAGAGGGTGTTCCCTTCCATGTA
CGACATGTTCATCGGAGGGGTCTCGGGGACCTTGGAGCCGGTGGCAACGA
CCGCTCTCCGAGAGCTTGGCGAGGAGCTAGGGCTAGGCCCGTGCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTCCGATCGCGGGGGAGGTGT
ACTGCCACCGGCGGACGTCGACGAAGAGGGTGTTCCCTTCCATGTACGAC
ATGTTCATCGGAGGGGTCTCGGGGACCTTGGAGCCGGTGGCAACGACCGC
TCTCCGAGAGCTTGGCGAGGAGCTAGGGCTAGGCCCGTGCAGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCTCCGATCGCGAGGAGGGCCAGCCG
CTGCCGGCATCCCTGCGCTACCGCGGGGAGTGCCTGGTGCAGACGGAGCT
CAACCGCTGCGTGGTGTCGGTGTTCGACTACCGCGTGGCTCCGGGGGAAA
CCGTCCGGTGGCAGGAGGAAGAGGTGGACTGGGGGAGCTATCTGCCGTGG
CACGAGAGGAGGGCCAGCCGCTGCCGGCATCCCTGCGCTACCGCGGGGAG
TGCCTGGTGCAGACGGAGCTCAACCGCTGCGTGGTGTCGGTGTTCGACTA
CCGCGTGGCTCCGGGGGAAACCGTCCGGTGGCAGGAGGAAGAGGTGGACT
GGGGGAGCTATCTGCCGTGGCACGAGGTTGTTTCCAAGGTGTCTGGGGGG
GACTGGGAATTCGTCCCCGATGGTCTACAGGTGTGGCGACACTATCTCGA
ATGGGAAAAGGAAGCGGCACCGCCATCGCGCTAAGTTGTTTCCAAGGTGT
CTGGGGGGGACTGGGAATTCGTCCCCGATGGTCTACAGGTGTGGCGACAC
TATCTCGAATGGGAAAAGGAAGCGGCACCGCCATCGCGCTAA
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