mRNA_C-linearis_contig85.16182.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16182.1
Unique NamemRNA_C-linearis_contig85.16182.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K097_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K097_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.700e-43
Identity = 89/144 (61.81%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  126 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPV 557
            M L +ATL EL KL  L A+ V  ERQYEVIKK+V+EGNSL +E+WEAFDL W L ++G FSEEEWTTQIDGDI  I NSARP+LSS HA A SA GKR AA AA A    RGA NRGKR++ +A+KGS NI ++ +     PV
Sbjct:    1 MSLPLATLRELQKLAALKAKGVTLERQYEVIKKHVREGNSLSSEDWEAFDLAWDLGSSGVFSEEEWTTQIDGDILGISNSARPTLSSDHAAASSASGKRSAAVAAPAA---RGAQNRGKRQREDASKGSLNIYNSFALGSGEPV 141          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.290e-38
Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = -2
Query:  111 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPVRLPRA 557
            M L +ATL EL KL  L A+ +I ERQYEVIKK+V+EGNSL +E+WEAFD+ W L+++G FSEE+WTTQ+DGDIS I NSARP+LSS+HA A SA GKR          A RGA NRGKR++ +AAKGS NI ++ +     PV   RA
Sbjct:    1 MSLPLATLRELQKLSALKAKGMILERQYEVIKKHVREGNSLTSEHWEAFDVAWDLRSSGVFSEEDWTTQVDGDISGI-NSARPTLSSEHAVASSASGKRXXXXXXXXXPAARGAPNRGKRQREDAAKGSLNIYNSFAIGSGQPVLRTRA 148          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K181_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K181_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.200e-36
Identity = 84/149 (56.38%), Postives = 103/149 (69.13%), Query Frame = -2
Query:  111 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPVRLPRA 557
            M L +ATL EL KL  L A+ VI ERQYEVIKKYV+EGNSL +E+WEAFDL W L+++G FSEE WTTQ+DGDIS I +SARP+L S HA A  A GKR +A       A RGA NRGKR++ + +KG  NI ++ +     PV   RA
Sbjct:    1 MSLPLATLRELQKLAALKAKGVILERQYEVIKKYVREGNSLSSEDWEAFDLAWDLRSSGVFSEE-WTTQVDGDISGI-SSARPTLCSDHAAASPASGKR-SAXXXXXXPAARGAPNRGKRQREDDSKGLLNIYNSFAIGSGEPVVRTRA 146          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K5I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.530e-34
Identity = 76/137 (55.47%), Postives = 94/137 (68.61%), Query Frame = -2
Query:  147 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAIS 557
            M L + TL EL KL  L  + VI ERQ EVIKK+V+EGNSL +E+WEAFDL W L+++G FSEEEWTTQ+DGDIS IINSARP+LSS HA A                 A RG  NRGKR++ +A+KGS NI ++ +
Sbjct:    1 MSLLLVTLRELQKLAALKEKGVILERQDEVIKKHVREGNSLSSEDWEAFDLAWDLRSSGVFSEEEWTTQVDGDISGIINSARPTLSSDHAAAXXXXXXXXXXXXX--XPAARGVPNRGKRQRMDASKGSLNIYNSFA 135          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5JAQ7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.490e-31
Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = -2
Query:  150 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSA-RPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAI 557
            M L +AT  EL KL  L A+  I ERQYEVIK +V++GNSL +E+WEAFDL W+L+++G FS+EEWTTQ+DGDIS IIN++ RP+L             + + AAAAA  A RGA NRGKR++ +A+KGS NI ++ 
Sbjct:    1 MSLPLATSRELQKLAALEAKGGILERQYEVIKIHVRQGNSLSSEDWEAFDLAWELRSSGVFSQEEWTTQVDGDISGIINNSDRPTLXXXXXXXX---XXQRSTAAAAAAPAARGAPNRGKRQREDASKGSLNIYNSF 134          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KFF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.790e-30
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  255 RVAMPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPA 566
            R  + L +ATL EL KL  L A+ VI ERQ EVIKK+VKEGNSL +E+WEAFDL W L+++G FS EEWTTQ DGDIS II SARP+LS   A A SA GKR A
Sbjct:   46 RAIISLPLATLRELQKLAALKAKGVILERQDEVIKKHVKEGNSLSSEDWEAFDLAWYLRSSGVFSGEEWTTQFDGDISGIIKSARPTLSDD-AAASSASGKRSA 148          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-21
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  354 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTT 557
            M L +ATL EL KL  L A+ VI ERQYEVIKK+V+E NSL +E+WEAFDL W L+++G FSEEEWTT
Sbjct:    1 MSLPLATLRELQKLAALNAKSVILERQYEVIKKHVRECNSLSSEDWEAFDLAWDLRSSGVFSEEEWTT 68          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.110e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  282 LTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFA 509
            L AR      + EVIKK+V+EGNS  +E+WEAFDL W L++ G FSEEEWTTQ+DGDIS IINSARP+LSS  A A
Sbjct:   44 LAARNSAGAARNEVIKKHVREGNSFSSEDWEAFDLAWDLRSRGVFSEEEWTTQVDGDISGIINSARPTLSSYRATA 119          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5JXD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.540e-20
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  303 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSL 557
            M L +ATL EL KL  L A+ V+      + KK+V+EGNSL +E+WEAFDL   L+++G FSE+EWTT +DGD+S IINSARP+L
Sbjct:    1 MSLPLATLRELQKLAVLKAKGVV------LFKKHVREGNSLSSEDWEAFDLVCDLRSSGVFSEKEWTTPVDGDVSGIINSARPTL 79          
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.330e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = -2
Query:  339 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQ-IDGD 557
            M L +ATL+EL KL  L A+ VI ERQYEVIKK+V+EGNSL +E+WEAFDL   L+++G  SEEEWTTQ ++G+
Sbjct:    1 MSLPLATLKELQKLAALKAKGVILERQYEVIKKHVREGNSLSSEDWEAFDLARDLRSSGVLSEEEWTTQTVEGE 74          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K097_9PHAE6.700e-4361.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI1.290e-3857.72C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K181_9PHAE3.200e-3656.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I5_9PHAE1.530e-3455.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAQ7_9PHAE1.490e-3153.28C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFF0_9PHAE1.790e-3064.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCB0_9PHAE1.030e-2166.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE4.110e-2164.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXD0_9PHAE5.540e-2056.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE1.330e-1862.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:710225..710812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size588
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.0238469-CDS-C-linearis_contig85:710224..7108121622930643.0238469-CDS-C-linearis_contig85:710224..710812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 710225..710812 +
1690881175.1035979-CDS-C-linearis_contig85:710224..7108121690881175.1035979-CDS-C-linearis_contig85:710224..710812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 710225..710812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16182.1prot_C-linearis_contig85.16182.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 710225..710812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16182.1

>prot_C-linearis_contig85.16182.1 ID=prot_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MSSSQAKKNKSLPPHPDLRCTCLVAASCCAYSGLAPSARGSRTGGGCAAE
IAELMLREPLAASVCFLFPRFRAPRTAETAAAAAAAGRFPSAEGAKACCE
ESEGRALLMITEMSPSICVVHSSSEKQPFVFSFHSKSKASQFSFMRELPS
FTYFLITSYCRSKITHLAVSPWSLSSSSNVATDKGMATLTKMERRQ
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mRNA from alignment at C-linearis_contig85:710225..710812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16182.1 ID=mRNA_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at C-linearis_contig85:710225..710812+ (Chordaria linearis ClinC8C monoicous)
ATGTCATCCTCTCAAGCAAAAAAAAACAAGAGCCTACCCCCGCATCCGGA TCTGCGCTGTACTTGTCTAGTGGCAGCTTCATGCTGCGCCTACTCTGGTC TAGCTCCATCTGCACGCGGTAGTCGTACAGGTGGCGGGTGCGCAGCTGAG ATTGCCGAGTTGATGTTACGCGAGCCTTTGGCGGCTTCCGTTTGTTTTCT TTTTCCTCGGTTCAGGGCCCCGCGAACTGCAGAAACTGCTGCTGCTGCTG CTGCTGCCGGCCGCTTCCCGAGTGCAGAAGGTGCAAAAGCGTGCTGTGAA GAAAGTGAAGGGCGAGCGCTGTTGATGATAACCGAGATGTCTCCGTCAAT CTGTGTGGTCCACTCTTCTTCCGAGAAGCAGCCGTTCGTTTTCAGCTTCC ATTCCAAGTCGAAGGCCTCCCAGTTTTCGTTCATGAGGGAGTTGCCCTCC TTCACATATTTTTTGATCACCTCGTATTGTCGCTCAAAGATCACACATCT TGCTGTGAGTCCTTGGAGTTTGTCGAGCTCCTCCAACGTCGCCACGGACA AAGGCATGGCGACCCTCACCAAAATGGAGAGGCGACAA
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Coding sequence (CDS) from alignment at C-linearis_contig85:710225..710812+

>mRNA_C-linearis_contig85.16182.1 ID=mRNA_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig85:710225..710812+ (Chordaria linearis ClinC8C monoicous)
ATGTCATCCTCTCAAGCAAAAAAAAACAAGAGCCTACCCCCGCATCCGGA
TCTGCGCTGTACTTGTCTAGTGGCAGCTTCATGCTGCGCCTACTCTGGTC
TAGCTCCATCTGCACGCGGTAGTCGTACAGGTGGCGGGTGCGCAGCTGAG
ATTGCCGAGTTGATGTTACGCGAGCCTTTGGCGGCTTCCGTTTGTTTTCT
TTTTCCTCGGTTCAGGGCCCCGCGAACTGCAGAAACTGCTGCTGCTGCTG
CTGCTGCCGGCCGCTTCCCGAGTGCAGAAGGTGCAAAAGCGTGCTGTGAA
GAAAGTGAAGGGCGAGCGCTGTTGATGATAACCGAGATGTCTCCGTCAAT
CTGTGTGGTCCACTCTTCTTCCGAGAAGCAGCCGTTCGTTTTCAGCTTCC
ATTCCAAGTCGAAGGCCTCCCAGTTTTCGTTCATGAGGGAGTTGCCCTCC
TTCACATATTTTTTGATCACCTCGTATTGTCGCTCAAAGATCACACATCT
TGCTGTGAGTCCTTGGAGTTTGTCGAGCTCCTCCAACGTCGCCACGGACA
AAGGCATGGCGACCCTCACCAAAATGGAGAGGCGACAAATGTCATCCTCT
CAAGCAAAAAAAAACAAGAGCCTACCCCCGCATCCGGATCTGCGCTGTAC
TTGTCTAGTGGCAGCTTCATGCTGCGCCTACTCTGGTCTAGCTCCATCTG
CACGCGGTAGTCGTACAGGTGGCGGGTGCGCAGCTGAGATTGCCGAGTTG
ATGTTACGCGAGCCTTTGGCGGCTTCCGTTTGTTTTCTTTTTCCTCGGTT
CAGGGCCCCGCGAACTGCAGAAACTGCTGCTGCTGCTGCTGCTGCCGGCC
GCTTCCCGAGTGCAGAAGGTGCAAAAGCGTGCTGTGAAGAAAGTGAAGGG
CGAGCGCTGTTGATGATAACCGAGATGTCTCCGTCAATCTGTGTGGTCCA
CTCTTCTTCCGAGAAGCAGCCGTTCGTTTTCAGCTTCCATTCCAAGTCGA
AGGCCTCCCAGTTTTCGTTCATGAGGGAGTTGCCCTCCTTCACATATTTT
TTGATCACCTCGTATTGTCGCTCAAAGATCACACATCTTGCTGTGAGTCC
TTGGAGTTTGTCGAGCTCCTCCAACGTCGCCACGGACAAAGGCATGGCGA
CCCTCACCAAAATGGAGAGGCGACAA
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