mRNA_C-linearis_contig85.16182.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K097_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K097_9PHAE) HSP 1 Score: 153 bits (387), Expect = 6.700e-43 Identity = 89/144 (61.81%), Postives = 105/144 (72.92%), Query Frame = -2
Query: 126 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPV 557
M L +ATL EL KL L A+ V ERQYEVIKK+V+EGNSL +E+WEAFDL W L ++G FSEEEWTTQIDGDI I NSARP+LSS HA A SA GKR AA AA A RGA NRGKR++ +A+KGS NI ++ + PV
Sbjct: 1 MSLPLATLRELQKLAALKAKGVTLERQYEVIKKHVREGNSLSSEDWEAFDLAWDLGSSGVFSEEEWTTQIDGDILGISNSARPTLSSDHAAASSASGKRSAAVAAPAA---RGAQNRGKRQREDASKGSLNIYNSFALGSGEPV 141
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 150 bits (378), Expect = 1.290e-38 Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = -2
Query: 111 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPVRLPRA 557
M L +ATL EL KL L A+ +I ERQYEVIKK+V+EGNSL +E+WEAFD+ W L+++G FSEE+WTTQ+DGDIS I NSARP+LSS+HA A SA GKR A RGA NRGKR++ +AAKGS NI ++ + PV RA
Sbjct: 1 MSLPLATLRELQKLSALKAKGMILERQYEVIKKHVREGNSLTSEHWEAFDVAWDLRSSGVFSEEDWTTQVDGDISGI-NSARPTLSSEHAVASSASGKRXXXXXXXXXPAARGAPNRGKRQREDAAKGSLNIYNSFAIGSGQPVLRTRA 148
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K181_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K181_9PHAE) HSP 1 Score: 134 bits (336), Expect = 3.200e-36 Identity = 84/149 (56.38%), Postives = 103/149 (69.13%), Query Frame = -2
Query: 111 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAISAAHPPPVRLPRA 557
M L +ATL EL KL L A+ VI ERQYEVIKKYV+EGNSL +E+WEAFDL W L+++G FSEE WTTQ+DGDIS I +SARP+L S HA A A GKR +A A RGA NRGKR++ + +KG NI ++ + PV RA
Sbjct: 1 MSLPLATLRELQKLAALKAKGVILERQYEVIKKYVREGNSLSSEDWEAFDLAWDLRSSGVFSEE-WTTQVDGDISGI-SSARPTLCSDHAAASPASGKR-SAXXXXXXPAARGAPNRGKRQREDDSKGLLNIYNSFAIGSGEPVVRTRA 146
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K5I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I5_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.530e-34 Identity = 76/137 (55.47%), Postives = 94/137 (68.61%), Query Frame = -2
Query: 147 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAIS 557
M L + TL EL KL L + VI ERQ EVIKK+V+EGNSL +E+WEAFDL W L+++G FSEEEWTTQ+DGDIS IINSARP+LSS HA A A RG NRGKR++ +A+KGS NI ++ +
Sbjct: 1 MSLLLVTLRELQKLAALKEKGVILERQDEVIKKHVREGNSLSSEDWEAFDLAWDLRSSGVFSEEEWTTQVDGDISGIINSARPTLSSDHAAAXXXXXXXXXXXXX--XPAARGVPNRGKRQRMDASKGSLNIYNSFA 135
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5JAQ7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ7_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.490e-31 Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = -2
Query: 150 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSA-RPSLSSQHAFAPSALGKRPAAAAAAAVSAVRGALNRGKRKQTEAAKGSRNINSAI 557
M L +AT EL KL L A+ I ERQYEVIK +V++GNSL +E+WEAFDL W+L+++G FS+EEWTTQ+DGDIS IIN++ RP+L + + AAAAA A RGA NRGKR++ +A+KGS NI ++
Sbjct: 1 MSLPLATSRELQKLAALEAKGGILERQYEVIKIHVRQGNSLSSEDWEAFDLAWELRSSGVFSQEEWTTQVDGDISGIINNSDRPTLXXXXXXXX---XXQRSTAAAAAAPAARGAPNRGKRQREDASKGSLNIYNSF 134
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KFF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF0_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.790e-30 Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = -2
Query: 255 RVAMPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFAPSALGKRPA 566
R + L +ATL EL KL L A+ VI ERQ EVIKK+VKEGNSL +E+WEAFDL W L+++G FS EEWTTQ DGDIS II SARP+LS A A SA GKR A
Sbjct: 46 RAIISLPLATLRELQKLAALKAKGVILERQDEVIKKHVKEGNSLSSEDWEAFDLAWYLRSSGVFSGEEWTTQFDGDISGIIKSARPTLSDD-AAASSASGKRSA 148
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB0_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.030e-21 Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query: 354 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTT 557
M L +ATL EL KL L A+ VI ERQYEVIKK+V+E NSL +E+WEAFDL W L+++G FSEEEWTT
Sbjct: 1 MSLPLATLRELQKLAALNAKSVILERQYEVIKKHVRECNSLSSEDWEAFDLAWDLRSSGVFSEEEWTT 68
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 4.110e-21 Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = -2
Query: 282 LTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSLSSQHAFA 509
L AR + EVIKK+V+EGNS +E+WEAFDL W L++ G FSEEEWTTQ+DGDIS IINSARP+LSS A A
Sbjct: 44 LAARNSAGAARNEVIKKHVREGNSFSSEDWEAFDLAWDLRSRGVFSEEEWTTQVDGDISGIINSARPTLSSYRATA 119
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5JXD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD0_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 5.540e-20 Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = -2
Query: 303 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQIDGDISVIINSARPSL 557
M L +ATL EL KL L A+ V+ + KK+V+EGNSL +E+WEAFDL L+++G FSE+EWTT +DGD+S IINSARP+L
Sbjct: 1 MSLPLATLRELQKLAVLKAKGVV------LFKKHVREGNSLSSEDWEAFDLVCDLRSSGVFSEKEWTTPVDGDVSGIINSARPTL 79
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.330e-18 Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = -2
Query: 339 MPLSVATLEELDKLQGLTARCVIFERQYEVIKKYVKEGNSLMNENWEAFDLEWKLKTNGCFSEEEWTTQ-IDGD 557
M L +ATL+EL KL L A+ VI ERQYEVIKK+V+EGNSL +E+WEAFDL L+++G SEEEWTTQ ++G+
Sbjct: 1 MSLPLATLKELQKLAALKAKGVILERQYEVIKKHVREGNSLSSEDWEAFDLARDLRSSGVLSEEEWTTQTVEGE 74 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig85.16182.1 >prot_C-linearis_contig85.16182.1 ID=prot_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp MSSSQAKKNKSLPPHPDLRCTCLVAASCCAYSGLAPSARGSRTGGGCAAEback to top mRNA from alignment at C-linearis_contig85:710225..710812+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig85.16182.1 ID=mRNA_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at C-linearis_contig85:710225..710812+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig85:710225..710812+ >mRNA_C-linearis_contig85.16182.1 ID=mRNA_C-linearis_contig85.16182.1|Name=mRNA_C-linearis_contig85.16182.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig85:710225..710812+ (Chordaria linearis ClinC8C monoicous)back to top |