mRNA_C-linearis_contig85.16181.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16181.1
Unique NamemRNA_C-linearis_contig85.16181.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 539 bits (1389), Expect = 6.820e-192
Identity = 262/295 (88.81%), Postives = 280/295 (94.92%), Query Frame = 1
Query:    1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            MT P   ++Y+AFKKCDGQW+QRRRK+DTSSLFYTLTKCC+QERGVAHI+RME+EQYSSQAIHSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAA  MLR V+KGDTLVFDRGYYSK+LLRSVHDSHAFGVWRLKI+AFKGTRSFFNSC TEA CLILG++ARLLKYFIDGKTYVCLTNDPSLSRR+IKT+YASRWRVEESFKRLKSNL+L KAHA+TP LYIQEVEARVLLD I
Sbjct:    1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTI 295          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 536 bits (1382), Expect = 9.520e-191
Identity = 263/295 (89.15%), Postives = 278/295 (94.24%), Query Frame = 1
Query:    1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            MT P   ++Y+AFKKCDGQW+QRRRK+DTSSLFYTLTKCC+QERGVAHI+RME+EQYSSQAIHSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAA  MLR V+KGDTLVFDRGYYSK+LLRSVHDSHAFGVWRLKINAFKGTR FFNSCHTEATCLILGV+ARLLKYFI GKTYVCLTND SLSRR+IK +YASRWRVEES KRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct:    1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 295          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 521 bits (1341), Expect = 2.960e-184
Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 1
Query:    1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            M  P   ++Y+AFKKCD QW+QRRRK+DTSSLFYTLT+CC+Q RGV H+++MEDE YSSQA+HSARKKLP GAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFI AGYKTRTND+PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AA +MLRSVQKGDTL+FDRGYYSKDLL SVH SHAFGVWRLKI+AF+GTRSFFNSC TEATCLILGVKARLLKYFIDGKTYVCLT DPSLSR  IKT+YASRWRVEESFKRLKSNL+L KAHA+TP LYIQEVEARVLLD I
Sbjct:    1 MACPMSPEIYDAFKKCDQQWMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTI 295          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 518 bits (1335), Expect = 5.100e-178
Identity = 248/284 (87.32%), Postives = 273/284 (96.13%), Query Frame = 1
Query:   34 AFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            +++KCD QWIQRRRK+DTSSLF+TLT+CC+Q RGV+H+++MEDE YSSQA+HSARKKLP GAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFI +GYKTRTND+PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AA +MLRSV+KGDTL+FDRGYYSKDLLRSVHDSHAFGVWRLKI+AFKGTRSFFNSC TEA CLILG++ARLLKYFIDGKTYVCLTNDPSLSRR+IKT+YASRWRVEESFKRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct:   27 SYQKCDQQWIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 310          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 474 bits (1220), Expect = 4.430e-160
Identity = 230/295 (77.97%), Postives = 260/295 (88.14%), Query Frame = 1
Query:    1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            MT P   ++Y+AFKKCD QW+QRRRK+DTSS+FYT+TKCC +ERGV+H+++ME E+YSSQA+H ARKKLP GAFKEVNRFLHRGPHEPR+FA+DGSKVHVHPSFI AGYKTRTNDKPVPRPAKRPLVMLSSMVDV+TK+C+DFELTKHF+ER+AA++MLRSV+K DTL+FDRGYYSKDLLRSVHDS AFGVWRL+I                  CLILGV+ RLLKYFI GKTYVCLTNDPSLSRR+IKT+YA RWRVEESFKRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct:    1 MTRPISPEIYDAFKKCDAQWMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI----------------MPCLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 279          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 7.380e-123
Identity = 187/244 (76.64%), Postives = 203/244 (83.20%), Query Frame = 1
Query:  154 MEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
            M +EQYSSQAIH ARKKLP GAFKEVNRFLH+GPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAK PLVMLSSMVDVKTKACVDFELTKHFNE  + I                 Y  K  LRS+HDS AFGVWRLKINAFKGT+SF +S  TE TCLILGV++RL+KY I+GKTYVCLTNDP+LSRR+IK IYASRWR E+S  RLKSN++L KAHA+TP LYIQEVEARVLLD I
Sbjct:    1 MGNEQYSSQAIHLARKKLPVGAFKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKACVDFELTKHFNEDGSRI-----------------YTQK--LRSIHDSQAFGVWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTI 224          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.160e-46
Identity = 98/172 (56.98%), Postives = 108/172 (62.79%), Query Frame = 1
Query:   52 GQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAF 567
            G  IQRRRKIDTSSLFYTLTK C+QERGV HI+R +DEQYSSQA+HSARKKLP GAFKE                                        PVPRPA RPLVMLSSMVD           TK FNERKA ++MLRSV +GDTLVFD+ YYS+ LLR+VHDS AF
Sbjct:  172 GDEIQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE----------------------------------------PVPRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A2Z2NHE4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NHE4_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 2.790e-23
Identity = 82/261 (31.42%), Postives = 127/261 (48.66%), Query Frame = 1
Query:  172 SSQAIHSARKKLPTGAFKEVN-RFLHRGPHEP-------RVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLIL-------------------GVKARLLKYFIDGKTYVC---LTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEA 864
            ++ A  +AR KL    FK +  + L +   +P       R+ AVDGSK+++    I AGYKT +++      A  P   +S + ++KTK  +DF+L  H +ERK AI+ L S+ + D +V+DRGYYS D+L      H   ++RLK  A +   +F NS   +A   I                     +  RL+KY   G +Y+    L +    S   +  +Y SRW VEE +K  K  +K+   HA++     QE+ A
Sbjct:  398 AASAFCNARAKLDEEVFKLLQVQILQQAKPDPKKLWQGHRLMAVDGSKLNLPRQLIRAGYKTPSDN------AHYPQGTVSCLYELKTKIPIDFDLASHRDERKMAISHLNSLSETDVVVYDRGYYSYDMLHEHDKRHIHPIFRLKTTACRVVEAFANSDDIDAVVQIFPSQSKRTSIPAHDPQPDYPALALRLVKYDAGGTSYILGTTLWDQKKYSIEQLSAVYHSRWGVEELYKISKQLMKVEDFHAQSERGVKQELFA 652          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A0C2RBS0_9RICK (DDE_Tnp_1 domain-containing protein (Fragment) n=2 Tax=Rickettsia asembonensis TaxID=1068590 RepID=A0A0C2RBS0_9RICK)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-18
Identity = 90/324 (27.78%), Postives = 143/324 (44.14%), Query Frame = 1
Query:   49 DGQWIQRRRKIDTSSLFYTLTKCCMQ-ERGVAHIVRMEDEQYSSQAIHS-------------ARKKLPTGAFKEVNRFL------------HRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKIN-AFKGTRSFFNSCHTEATCLILG-------------------VKARLLKYFIDGKTYVCLTN--DPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLL 876
            D QWI+R+R ID+  L   + +  +   +G +  +    E YS++ I +             AR+KL    F ++N+ L            H+  H  RVFAVDGS+V++       GYKT   +   P+       ++S + ++  +   DF L+K+ NER      L  +QKGD ++FDRGY+S  LL          V+R+ I+   K    F +S   ++    +                    +  RL+K+ ID K Y+  T   D   SR+    +YA RW +EE +K  K  + +   H+KT     QE  A  +L
Sbjct:   38 DNQWIKRKRSIDSKFLISFIFQIILDTNKGYSISLLRLWEHYSNKDIQTPQQKIFAPSSVCEARQKLSEQIFIDLNKKLISEFNYQKQKVAHQLAH--RVFAVDGSRVNLPKELKELGYKTCNKNSYYPQG------LMSCIYNIDAQIVYDFCLSKNLNERLCVPNHLSVLQKGDIVIFDRGYFSYLLLYQCMKKDIVPVFRVSIHLGNKALLDFVSSVEPDSVIEYVPSSTVKKQIEKQGLNIECKPIMLRLVKHEIDYKLYLYATTLIDSKYSRKIFAELYAKRWEIEELYKISKCLVDVEAFHSKTERGVKQETYAHFVL 353          
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6L8GJ11_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GJ11_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 1.330e-16
Identity = 84/316 (26.58%), Postives = 142/316 (44.94%), Query Frame = 1
Query:   49 DGQWIQRRRKIDTS--SLFYTLTKCCMQERGVAHIVRM-------------EDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEP------RVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRP-AKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILG-------------------VKARLLKYFIDGKTY---VCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEA 864
            D +W++RRR +++    LF        +E+G A +                + E   + +I  AR+++    F +++R + R   +       RVFAVDG+K+++    + AGY       P+P+  A  P  ++S +  + TK  VDF L+    ER AA+  L +++ GD +VFDRGY+S +LL +V  + A  V+RL+ N     R F     TEA                         V  RL++    G  +     L +   +S  ++  +Y  RW +EE +K  K  + + + H +T     QE+ A
Sbjct:  342 DRRWMKRRRVLNSLIVMLFVFRLVLSRREKGYATVTAELWEQCRKLGIALPQREPVVASSICKARQRVHEELFLDLHREILRHGGDGARWKGRRVFAVDGTKMNLPRGLVDAGY-------PLPKDGAHYPQGLVSCLYRLDTKVPVDFSLSARACERTAALGHLHALEAGDVVVFDRGYFSFELLHAVIRTGAHPVFRLQANGVAAFRDFMAGDGTEAVVAASPGPDTRRELARRRPGERFDPVDVRLVRCRTGGDGFNLATTLLDADDVSADDLGALYQGRWSIEELYKVSKQTVAVDEFHGRTERGVRQELYA 650          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LP47_ECTSI6.820e-19288.81EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LP60_ECTSI9.520e-19189.15EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
Q8QNB6_ESV1K2.960e-18485.42EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K772_9PHAE5.100e-17887.32DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA56_9PHAE4.430e-16077.97DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0K9_9PHAE7.380e-12376.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T1_9PHAE3.160e-4656.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2Z2NHE4_9GAMM2.790e-2331.42Uncharacterized protein n=1 Tax=Granulosicoccus an... [more]
A0A0C2RBS0_9RICK1.080e-1827.78DDE_Tnp_1 domain-containing protein (Fragment) n=2... [more]
A0A6L8GJ11_9BACT1.330e-1626.58IS4 family transposase n=1 Tax=Acidobacteria bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:693526..694410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.8
Seed ortholog evalue8.1e-18
Seed eggNOG ortholog1046724.KB889834_gene1048
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3385 FOG Transposase and inactivated derivatives
EggNOG OGs1MVRM@1224,1RRFT@1236,464GA@72275,COG3385@1,COG3385@2
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size885
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.803851-UTR-C-linearis_contig85:693525..6935941622930648.803851-UTR-C-linearis_contig85:693525..693594Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 693526..693594 -
1690881177.9034724-UTR-C-linearis_contig85:693525..6935941690881177.9034724-UTR-C-linearis_contig85:693525..693594Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 693526..693594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.8217108-CDS-C-linearis_contig85:693594..6944101622930648.8217108-CDS-C-linearis_contig85:693594..694410Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 693595..694410 -
1690881177.9184008-CDS-C-linearis_contig85:693594..6944101690881177.9184008-CDS-C-linearis_contig85:693594..694410Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 693595..694410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16181.1prot_C-linearis_contig85.16181.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 693595..694410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16181.1

>prot_C-linearis_contig85.16181.1 ID=prot_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIV
RMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHV
HPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFN
ERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFK
GTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKT
IYASRWRVEESFKRLKSNLKL*
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mRNA from alignment at C-linearis_contig85:693526..694410-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16181.1 ID=mRNA_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=885bp|location=Sequence derived from alignment at C-linearis_contig85:693526..694410- (Chordaria linearis ClinC8C monoicous)
ATGACTCACCCGACTCATCTTGACTTGTACAACGCCTTCAAAAAGTGCGA TGGACAGTGGATACAGAGACGGCGAAAGATAGATACATCTTCCCTCTTCT ACACGCTCACGAAGTGTTGTATGCAAGAGAGAGGTGTTGCTCACATAGTG AGGATGGAGGACGAACAATATTCGTCACAGGCGATACACTCGGCCAGGAA GAAGCTTCCAACCGGGGCTTTCAAAGAGGTAAACCGGTTCTTACACCGAG GACCACACGAACCACGTGTATTCGCCGTAGATGGTTCGAAGGTGCATGTG CATCCGTCGTTCATCGGCGCTGGGTACAAAACCCGGACGAACGATAAGCC CGTGCCGCGTCCCGCGAAACGACCTCTTGTCATGCTTTCTTCGATGGTGG ACGTAAAAACGAAAGCGTGCGTGGACTTCGAACTCACGAAACACTTCAAC GAAAGAAAGGCAGCAATTGCAATGCTCCGAAGTGTGCAGAAAGGTGATAC TCTGGTGTTTGACAGGGGCTACTACTCCAAAGACTTGCTACGAAGCGTTC ATGACTCGCATGCGTTTGGGGTTTGGCGACTGAAGATAAATGCGTTCAAA GGCACCAGGTCTTTTTTCAACTCGTGTCACACGGAAGCAACATGCCTTAT TCTTGGTGTCAAGGCGCGTCTATTGAAGTACTTCATTGATGGTAAAACAT ATGTTTGCTTGACGAATGATCCATCGCTATCTCGGCGGAATATTAAGACT ATTTACGCGTCGAGATGGAGGGTGGAAGAATCCTTCAAGCGCTTGAAATC AAACCTCAAGCTCTAAAAAGCTCACGCCAAAACACCCTCTCTTTACATTC AAGAGGTGGAGGCCCGAGTTTTGCTAGACTTAATC
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Coding sequence (CDS) from alignment at C-linearis_contig85:693526..694410-

>mRNA_C-linearis_contig85.16181.1 ID=mRNA_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig85:693526..694410- (Chordaria linearis ClinC8C monoicous)
ATGACTCACCCGACTCATCTTGACTTGTACAACGCCTTCAAAAAGTGCGA
TGGACAGTGGATACAGAGACGGCGAAAGATAGATACATCTTCCCTCTTCT
ACACGCTCACGAAGTGTTGTATGCAAGAGAGAGGTGTTGCTCACATAGTG
AGGATGGAGGACGAACAATATTCGTCACAGGCGATACACTCGGCCAGGAA
GAAGCTTCCAACCGGGGCTTTCAAAGAGGTAAACCGGTTCTTACACCGAG
GACCACACGAACCACGTGTATTCGCCGTAGATGGTTCGAAGGTGCATGTG
CATCCGTCGTTCATCGGCGCTGGGTACAAAACCCGGACGAACGATAAGCC
CGTGCCGCGTCCCGCGAAACGACCTCTTGTCATGCTTTCTTCGATGGTGG
ACGTAAAAACGAAAGCGTGCGTGGACTTCGAACTCACGAAACACTTCAAC
GAAAGAAAGGCAGCAATTGCAATGCTCCGAAGTGTGCAGAAAGGTGATAC
TCTGGTGTTTGACAGGGGCTACTACTCCAAAGACTTGCTACGAAGCGTTC
ATGACTCGCATGCGTTTGGGGTTTGGCGACTGAAGATAAATGCGTTCAAA
GGCACCAGGTCTTTTTTCAACTCGTGTCACACGGAAGCAACATGCCTTAT
TCTTGGTGTCAAGGCGCGTCTATTGAAGTACTTCATTGATGGTAAAACAT
ATGTTTGCTTGACGAATGATCCATCGCTATCTCGGCGGAATATTAAGACT
ATTTACGCGTCGAGATGGAGGGTGGAAGAATCCTTCAAGCGCTTGAAATC
AAACCTCAAGCTCTAAATGACTCACCCGACTCATCTTGACTTGTACAACG
CCTTCAAAAAGTGCGATGGACAGTGGATACAGAGACGGCGAAAGATAGAT
ACATCTTCCCTCTTCTACACGCTCACGAAGTGTTGTATGCAAGAGAGAGG
TGTTGCTCACATAGTGAGGATGGAGGACGAACAATATTCGTCACAGGCGA
TACACTCGGCCAGGAAGAAGCTTCCAACCGGGGCTTTCAAAGAGGTAAAC
CGGTTCTTACACCGAGGACCACACGAACCACGTGTATTCGCCGTAGATGG
TTCGAAGGTGCATGTGCATCCGTCGTTCATCGGCGCTGGGTACAAAACCC
GGACGAACGATAAGCCCGTGCCGCGTCCCGCGAAACGACCTCTTGTCATG
CTTTCTTCGATGGTGGACGTAAAAACGAAAGCGTGCGTGGACTTCGAACT
CACGAAACACTTCAACGAAAGAAAGGCAGCAATTGCAATGCTCCGAAGTG
TGCAGAAAGGTGATACTCTGGTGTTTGACAGGGGCTACTACTCCAAAGAC
TTGCTACGAAGCGTTCATGACTCGCATGCGTTTGGGGTTTGGCGACTGAA
GATAAATGCGTTCAAAGGCACCAGGTCTTTTTTCAACTCGTGTCACACGG
AAGCAACATGCCTTATTCTTGGTGTCAAGGCGCGTCTATTGAAGTACTTC
ATTGATGGTAAAACATATGTTTGCTTGACGAATGATCCATCGCTATCTCG
GCGGAATATTAAGACTATTTACGCGTCGAGATGGAGGGTGGAAGAATCCT
TCAAGCGCTTGAAATCAAACCTCAAGCTCTAA
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