mRNA_C-linearis_contig85.16181.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI) HSP 1 Score: 539 bits (1389), Expect = 6.820e-192 Identity = 262/295 (88.81%), Postives = 280/295 (94.92%), Query Frame = 1
Query: 1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
MT P ++Y+AFKKCDGQW+QRRRK+DTSSLFYTLTKCC+QERGVAHI+RME+EQYSSQAIHSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAA MLR V+KGDTLVFDRGYYSK+LLRSVHDSHAFGVWRLKI+AFKGTRSFFNSC TEA CLILG++ARLLKYFIDGKTYVCLTNDPSLSRR+IKT+YASRWRVEESFKRLKSNL+L KAHA+TP LYIQEVEARVLLD I
Sbjct: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTI 295
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI) HSP 1 Score: 536 bits (1382), Expect = 9.520e-191 Identity = 263/295 (89.15%), Postives = 278/295 (94.24%), Query Frame = 1
Query: 1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
MT P ++Y+AFKKCDGQW+QRRRK+DTSSLFYTLTKCC+QERGVAHI+RME+EQYSSQAIHSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAA MLR V+KGDTLVFDRGYYSK+LLRSVHDSHAFGVWRLKINAFKGTR FFNSCHTEATCLILGV+ARLLKYFI GKTYVCLTND SLSRR+IK +YASRWRVEES KRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 295
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K) HSP 1 Score: 521 bits (1341), Expect = 2.960e-184 Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 1
Query: 1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
M P ++Y+AFKKCD QW+QRRRK+DTSSLFYTLT+CC+Q RGV H+++MEDE YSSQA+HSARKKLP GAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFI AGYKTRTND+PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AA +MLRSVQKGDTL+FDRGYYSKDLL SVH SHAFGVWRLKI+AF+GTRSFFNSC TEATCLILGVKARLLKYFIDGKTYVCLT DPSLSR IKT+YASRWRVEESFKRLKSNL+L KAHA+TP LYIQEVEARVLLD I
Sbjct: 1 MACPMSPEIYDAFKKCDQQWMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTI 295
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 518 bits (1335), Expect = 5.100e-178 Identity = 248/284 (87.32%), Postives = 273/284 (96.13%), Query Frame = 1
Query: 34 AFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
+++KCD QWIQRRRK+DTSSLF+TLT+CC+Q RGV+H+++MEDE YSSQA+HSARKKLP GAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFI +GYKTRTND+PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AA +MLRSV+KGDTL+FDRGYYSKDLLRSVHDSHAFGVWRLKI+AFKGTRSFFNSC TEA CLILG++ARLLKYFIDGKTYVCLTNDPSLSRR+IKT+YASRWRVEESFKRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct: 27 SYQKCDQQWIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 310
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 4.430e-160 Identity = 230/295 (77.97%), Postives = 260/295 (88.14%), Query Frame = 1
Query: 1 MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
MT P ++Y+AFKKCD QW+QRRRK+DTSS+FYT+TKCC +ERGV+H+++ME E+YSSQA+H ARKKLP GAFKEVNRFLHRGPHEPR+FA+DGSKVHVHPSFI AGYKTRTNDKPVPRPAKRPLVMLSSMVDV+TK+C+DFELTKHF+ER+AA++MLRSV+K DTL+FDRGYYSKDLLRSVHDS AFGVWRL+I CLILGV+ RLLKYFI GKTYVCLTNDPSLSRR+IKT+YA RWRVEESFKRLKSNLKL KAHAKTP+LYIQEVEARVLLD I
Sbjct: 1 MTRPISPEIYDAFKKCDAQWMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI----------------MPCLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 279
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE) HSP 1 Score: 359 bits (922), Expect = 7.380e-123 Identity = 187/244 (76.64%), Postives = 203/244 (83.20%), Query Frame = 1
Query: 154 MEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILGVKARLLKYFIDGKTYVCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLLDLI 885
M +EQYSSQAIH ARKKLP GAFKEVNRFLH+GPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAK PLVMLSSMVDVKTKACVDFELTKHFNE + I Y K LRS+HDS AFGVWRLKINAFKGT+SF +S TE TCLILGV++RL+KY I+GKTYVCLTNDP+LSRR+IK IYASRWR E+S RLKSN++L KAHA+TP LYIQEVEARVLLD I
Sbjct: 1 MGNEQYSSQAIHLARKKLPVGAFKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKACVDFELTKHFNEDGSRI-----------------YTQK--LRSIHDSQAFGVWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTI 224
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 3.160e-46 Identity = 98/172 (56.98%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 52 GQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVRMEDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAF 567
G IQRRRKIDTSSLFYTLTK C+QERGV HI+R +DEQYSSQA+HSARKKLP GAFKE PVPRPA RPLVMLSSMVD TK FNERKA ++MLRSV +GDTLVFD+ YYS+ LLR+VHDS AF
Sbjct: 172 GDEIQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE----------------------------------------PVPRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A2Z2NHE4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NHE4_9GAMM) HSP 1 Score: 110 bits (274), Expect = 2.790e-23 Identity = 82/261 (31.42%), Postives = 127/261 (48.66%), Query Frame = 1
Query: 172 SSQAIHSARKKLPTGAFKEVN-RFLHRGPHEP-------RVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLIL-------------------GVKARLLKYFIDGKTYVC---LTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEA 864
++ A +AR KL FK + + L + +P R+ AVDGSK+++ I AGYKT +++ A P +S + ++KTK +DF+L H +ERK AI+ L S+ + D +V+DRGYYS D+L H ++RLK A + +F NS +A I + RL+KY G +Y+ L + S + +Y SRW VEE +K K +K+ HA++ QE+ A
Sbjct: 398 AASAFCNARAKLDEEVFKLLQVQILQQAKPDPKKLWQGHRLMAVDGSKLNLPRQLIRAGYKTPSDN------AHYPQGTVSCLYELKTKIPIDFDLASHRDERKMAISHLNSLSETDVVVYDRGYYSYDMLHEHDKRHIHPIFRLKTTACRVVEAFANSDDIDAVVQIFPSQSKRTSIPAHDPQPDYPALALRLVKYDAGGTSYILGTTLWDQKKYSIEQLSAVYHSRWGVEELYKISKQLMKVEDFHAQSERGVKQELFA 652
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A0C2RBS0_9RICK (DDE_Tnp_1 domain-containing protein (Fragment) n=2 Tax=Rickettsia asembonensis TaxID=1068590 RepID=A0A0C2RBS0_9RICK) HSP 1 Score: 95.9 bits (237), Expect = 1.080e-18 Identity = 90/324 (27.78%), Postives = 143/324 (44.14%), Query Frame = 1
Query: 49 DGQWIQRRRKIDTSSLFYTLTKCCMQ-ERGVAHIVRMEDEQYSSQAIHS-------------ARKKLPTGAFKEVNRFL------------HRGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKIN-AFKGTRSFFNSCHTEATCLILG-------------------VKARLLKYFIDGKTYVCLTN--DPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEARVLL 876
D QWI+R+R ID+ L + + + +G + + E YS++ I + AR+KL F ++N+ L H+ H RVFAVDGS+V++ GYKT + P+ ++S + ++ + DF L+K+ NER L +QKGD ++FDRGY+S LL V+R+ I+ K F +S ++ + + RL+K+ ID K Y+ T D SR+ +YA RW +EE +K K + + H+KT QE A +L
Sbjct: 38 DNQWIKRKRSIDSKFLISFIFQIILDTNKGYSISLLRLWEHYSNKDIQTPQQKIFAPSSVCEARQKLSEQIFIDLNKKLISEFNYQKQKVAHQLAH--RVFAVDGSRVNLPKELKELGYKTCNKNSYYPQG------LMSCIYNIDAQIVYDFCLSKNLNERLCVPNHLSVLQKGDIVIFDRGYFSYLLLYQCMKKDIVPVFRVSIHLGNKALLDFVSSVEPDSVIEYVPSSTVKKQIEKQGLNIECKPIMLRLVKHEIDYKLYLYATTLIDSKYSRKIFAELYAKRWEIEELYKISKCLVDVEAFHSKTERGVKQETYAHFVL 353
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Match: A0A6L8GJ11_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GJ11_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 1.330e-16 Identity = 84/316 (26.58%), Postives = 142/316 (44.94%), Query Frame = 1
Query: 49 DGQWIQRRRKIDTS--SLFYTLTKCCMQERGVAHIVRM-------------EDEQYSSQAIHSARKKLPTGAFKEVNRFLHRGPHEP------RVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRP-AKRPLVMLSSMVDVKTKACVDFELTKHFNERKAAIAMLRSVQKGDTLVFDRGYYSKDLLRSVHDSHAFGVWRLKINAFKGTRSFFNSCHTEATCLILG-------------------VKARLLKYFIDGKTY---VCLTNDPSLSRRNIKTIYASRWRVEESFKRLKSNLKL*KAHAKTPSLYIQEVEA 864
D +W++RRR +++ LF +E+G A + + E + +I AR+++ F +++R + R + RVFAVDG+K+++ + AGY P+P+ A P ++S + + TK VDF L+ ER AA+ L +++ GD +VFDRGY+S +LL +V + A V+RL+ N R F TEA V RL++ G + L + +S ++ +Y RW +EE +K K + + + H +T QE+ A
Sbjct: 342 DRRWMKRRRVLNSLIVMLFVFRLVLSRREKGYATVTAELWEQCRKLGIALPQREPVVASSICKARQRVHEELFLDLHREILRHGGDGARWKGRRVFAVDGTKMNLPRGLVDAGY-------PLPKDGAHYPQGLVSCLYRLDTKVPVDFSLSARACERTAALGHLHALEAGDVVVFDRGYFSFELLHAVIRTGAHPVFRLQANGVAAFRDFMAGDGTEAVVAASPGPDTRRELARRRPGERFDPVDVRLVRCRTGGDGFNLATTLLDADDVSADDLGALYQGRWSIEELYKVSKQTVAVDEFHGRTERGVRQELYA 650 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig85.16181.1 >prot_C-linearis_contig85.16181.1 ID=prot_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp MTHPTHLDLYNAFKKCDGQWIQRRRKIDTSSLFYTLTKCCMQERGVAHIVback to top mRNA from alignment at C-linearis_contig85:693526..694410- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig85.16181.1 ID=mRNA_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=885bp|location=Sequence derived from alignment at C-linearis_contig85:693526..694410- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig85:693526..694410- >mRNA_C-linearis_contig85.16181.1 ID=mRNA_C-linearis_contig85.16181.1|Name=mRNA_C-linearis_contig85.16181.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig85:693526..694410- (Chordaria linearis ClinC8C monoicous)back to top |