mRNA_C-linearis_contig85.16177.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16177.1
Unique NamemRNA_C-linearis_contig85.16177.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16177.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 5.430e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 258
            MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK
Sbjct:    1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 86
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6P8_ECTSI5.430e-56100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:660155..660412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.4318604-CDS-C-linearis_contig85:660154..6604121622930648.4318604-CDS-C-linearis_contig85:660154..660412Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 660155..660412 -
1690881177.784734-CDS-C-linearis_contig85:660154..6604121690881177.784734-CDS-C-linearis_contig85:660154..660412Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 660155..660412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16177.1prot_C-linearis_contig85.16177.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 660155..660412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16177.1

>prot_C-linearis_contig85.16177.1 ID=prot_C-linearis_contig85.16177.1|Name=mRNA_C-linearis_contig85.16177.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=86bp
MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQK
FVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK
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mRNA from alignment at C-linearis_contig85:660155..660412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16177.1 ID=mRNA_C-linearis_contig85.16177.1|Name=mRNA_C-linearis_contig85.16177.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at C-linearis_contig85:660155..660412- (Chordaria linearis ClinC8C monoicous)
ATGCTGAAGGCTCTTGGGATCGAGAACCAAGTGATCAGCATGACGACTGA
CACGGCTGCGAATATGAAGAACGGCGTCATTGTCCACATGGCGCCGCAGA
TTCAGTGGCTTGGATGTGGATGCCACAAGACTGAGCTCACGGTGCAGAAG
TTCGTCAACACTCCCGGCCTGAAGGAGACCCTCAAAAGGTTCACCAAGGT
TGCCGGGCACCTGCACAAGTCTGCGCTGTCGCTGGGAGCGTTCTTTGAGG
CGCAGAAG
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Coding sequence (CDS) from alignment at C-linearis_contig85:660155..660412-

>mRNA_C-linearis_contig85.16177.1 ID=mRNA_C-linearis_contig85.16177.1|Name=mRNA_C-linearis_contig85.16177.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at C-linearis_contig85:660155..660412- (Chordaria linearis ClinC8C monoicous)
ATGCTGAAGGCTCTTGGGATCGAGAACCAAGTGATCAGCATGACGACTGA
CACGGCTGCGAATATGAAGAACGGCGTCATTGTCCACATGGCGCCGCAGA
TTCAGTGGCTTGGATGTGGATGCCACAAGACTGAGCTCACGGTGCAGAAG
TTCGTCAACACTCCCGGCCTGAAGGAGACCCTCAAAAGGTTCACCAAGGT
TGCCGGGCACCTGCACAAGTCTGCGCTGTCGCTGGGAGCGTTCTTTGAGG
CGCAGAAGATGCTGAAGGCTCTTGGGATCGAGAACCAAGTGATCAGCATG
ACGACTGACACGGCTGCGAATATGAAGAACGGCGTCATTGTCCACATGGC
GCCGCAGATTCAGTGGCTTGGATGTGGATGCCACAAGACTGAGCTCACGG
TGCAGAAGTTCGTCAACACTCCCGGCCTGAAGGAGACCCTCAAAAGGTTC
ACCAAGGTTGCCGGGCACCTGCACAAGTCTGCGCTGTCGCTGGGAGCGTT
CTTTGAGGCGCAGAAG
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