mRNA_C-linearis_contig85.16176.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16176.1
Unique NamemRNA_C-linearis_contig85.16176.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:655209..655334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010110.1
Exons1
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.3861127-CDS-C-linearis_contig85:655208..6553341622930648.3861127-CDS-C-linearis_contig85:655208..655334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 655209..655334 -
1690881177.7739706-CDS-C-linearis_contig85:655208..6553341690881177.7739706-CDS-C-linearis_contig85:655208..655334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 655209..655334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16176.1prot_C-linearis_contig85.16176.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 655209..655334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16176.1

>prot_C-linearis_contig85.16176.1 ID=prot_C-linearis_contig85.16176.1|Name=mRNA_C-linearis_contig85.16176.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=42bp
MEKKKAATETLKRMLVGTSPAVTSDIWTSNSNVSSAATHHV*
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mRNA from alignment at C-linearis_contig85:655209..655334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16176.1 ID=mRNA_C-linearis_contig85.16176.1|Name=mRNA_C-linearis_contig85.16176.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at C-linearis_contig85:655209..655334- (Chordaria linearis ClinC8C monoicous)
ATGGAGAAGAAGAAGGCTGCCACGGAGACTCTCAAGAGGATGCTCGTCGG
TACAAGCCCGGCGGTGACCAGCGACATTTGGACATCAAATTCCAACGTGA
GTTCAGCAGCTACCCACCACGTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig85:655209..655334-

>mRNA_C-linearis_contig85.16176.1 ID=mRNA_C-linearis_contig85.16176.1|Name=mRNA_C-linearis_contig85.16176.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at C-linearis_contig85:655209..655334- (Chordaria linearis ClinC8C monoicous)
ATGGAGAAGAAGAAGGCTGCCACGGAGACTCTCAAGAGGATGCTCGTCGG
TACAAGCCCGGCGGTGACCAGCGACATTTGGACATCAAATTCCAACGTGA
GTTCAGCAGCTACCCACCACGTTTGAATGGAGAAGAAGAAGGCTGCCACG
GAGACTCTCAAGAGGATGCTCGTCGGTACAAGCCCGGCGGTGACCAGCGA
CATTTGGACATCAAATTCCAACGTGAGTTCAGCAGCTACCCACCACGTTT
GA
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