mRNA_C-linearis_contig85.16175.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16175.1
Unique NamemRNA_C-linearis_contig85.16175.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5K097_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K097_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.160e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDI 150
            ERQYEVIKKHV+EGN L +E+W+AF LA  L ++G FSEEEWTTQIDGDI
Sbjct:   25 ERQYEVIKKHVREGNSLSSEDWEAFDLAWDLGSSGVFSEEEWTTQIDGDI 74
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5K5I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.770e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            ERQ EVIKKHV+EGN L +E+W+AF LA  L+++G FSEEEWTTQ+DGDIS I
Sbjct:   25 ERQDEVIKKHVREGNSLSSEDWEAFDLAWDLRSSGVFSEEEWTTQVDGDISGI 77
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.120e-16
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            ERQYEVIKKHV+EGN L +E+W+AF +A  L+++G FSEE+WTTQ+DGDIS I
Sbjct:   25 ERQYEVIKKHVREGNSLTSEHWEAFDVAWDLRSSGVFSEEDWTTQVDGDISGI 77
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5JAQ7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.720e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            ERQYEVIK HV++GN L +E+W+AF LA +L+++G FS+EEWTTQ+DGDIS I
Sbjct:   25 ERQYEVIKIHVRQGNSLSSEDWEAFDLAWELRSSGVFSQEEWTTQVDGDISGI 77
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5KFF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.980e-16
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            ERQ EVIKKHVKEGN L +E+W+AF LA  L+++G FS EEWTTQ DGDIS I
Sbjct:   73 ERQDEVIKKHVKEGNSLSSEDWEAFDLAWYLRSSGVFSGEEWTTQFDGDISGI 125
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5K181_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K181_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.190e-15
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            ERQYEVIKK+V+EGN L +E+W+AF LA  L+++G FSEE WTTQ+DGDIS I
Sbjct:   25 ERQYEVIKKYVREGNSLSSEDWEAFDLAWDLRSSGVFSEE-WTTQVDGDISGI 76
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.910e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   13 EVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            EVIKKHV+EGN   +E+W+AF LA  L++ G FSEEEWTTQ+DGDIS I
Sbjct:   56 EVIKKHVREGNSFSSEDWEAFDLAWDLRSRGVFSEEEWTTQVDGDISGI 104
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BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.150e-13
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQ-IDGD 147
            ERQYEVIKKHV+EGN L +E+W+AF LA  L+++G  SEEEWTTQ ++G+
Sbjct:   25 ERQYEVIKKHVREGNSLSSEDWEAFDLARDLRSSGVLSEEEWTTQTVEGE 74
[Close]
BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5KCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.290e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTT 132
            ERQYEVIKKHV+E N L +E+W+AF LA  L+++G FSEEEWTT
Sbjct:   25 ERQYEVIKKHVRECNSLSSEDWEAFDLAWDLRSSGVFSEEEWTT 68
[Close]
BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Match: A0A6H5JXD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.990e-12
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   16 VIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDISVI 159
            + KKHV+EGN L +E+W+AF L   L+++G FSE+EWTT +DGD+S I
Sbjct:   24 LFKKHVREGNSLSSEDWEAFDLVCDLRSSGVFSEKEWTTPVDGDVSGI 71
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K097_9PHAE2.160e-1674.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I5_9PHAE2.770e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI4.120e-1667.92C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JAQ7_9PHAE6.720e-1666.04C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFF0_9PHAE7.980e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K181_9PHAE9.190e-1567.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE3.910e-1467.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE9.150e-1364.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCB0_9PHAE9.290e-1368.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXD0_9PHAE4.990e-1256.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:649712..649872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog2880.D8LRF1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.3061082-CDS-C-linearis_contig85:649711..6498701622930648.3061082-CDS-C-linearis_contig85:649711..649870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 649712..649870 +
1690881177.7594352-CDS-C-linearis_contig85:649711..6498701690881177.7594352-CDS-C-linearis_contig85:649711..649870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 649712..649870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16175.1prot_C-linearis_contig85.16175.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 649712..649870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16175.1

>prot_C-linearis_contig85.16175.1 ID=prot_C-linearis_contig85.16175.1|Name=mRNA_C-linearis_contig85.16175.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=53bp
ERQYEVIKKHVKEGNPLMNENWKAFGLASKLKTNGCFSEEEWTTQIDGDI
SVI
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mRNA from alignment at C-linearis_contig85:649712..649872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16175.1 ID=mRNA_C-linearis_contig85.16175.1|Name=mRNA_C-linearis_contig85.16175.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=161bp|location=Sequence derived from alignment at C-linearis_contig85:649712..649872+ (Chordaria linearis ClinC8C monoicous)
GAGCGACAATACGAGGTGATCAAGAAACATGTGAAGGAGGGCAACCCCCT
CATGAACGAAAACTGGAAGGCCTTCGGCTTGGCATCGAAGCTGAAAACGA
ACGGCTGCTTCTCGGAAGAAGAGTGGACCACACAGATTGACGGAGACATC
TCGGTTATCAT
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Coding sequence (CDS) from alignment at C-linearis_contig85:649712..649872+

>mRNA_C-linearis_contig85.16175.1 ID=mRNA_C-linearis_contig85.16175.1|Name=mRNA_C-linearis_contig85.16175.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at C-linearis_contig85:649712..649872+ (Chordaria linearis ClinC8C monoicous)
GAGCGACAATACGAGGTGATCAAGAAACATGTGAAGGAGGGCAACCCCCT
CATGAACGAAAACTGGAAGGCCTTCGGCTTGGCATCGAAGCTGAAAACGA
ACGGCTGCTTCTCGGAAGAAGAGTGGACCACACAGATTGACGGAGACATC
TCGGTTATCGAGCGACAATACGAGGTGATCAAGAAACATGTGAAGGAGGG
CAACCCCCTCATGAACGAAAACTGGAAGGCCTTCGGCTTGGCATCGAAGC
TGAAAACGAACGGCTGCTTCTCGGAAGAAGAGTGGACCACACAGATTGAC
GGAGACATCTCGGTTATC
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