mRNA_C-linearis_contig85.16174.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16174.1
Unique NamemRNA_C-linearis_contig85.16174.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5KN73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN73_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.900e-17
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            G LP LLQA+ +G+GQE S         G  +  + PSSHREL+PAV V EGDT G E+SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:  118 GMLPSLLQAESEGQGQEGSAALQE-GAAGAAELGVPPSSHRELYPAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSL 206
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BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5K498_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K498_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.560e-17
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            G LP LLQA+ +G+GQE S    +    G  +  + PSSHREL PAV V EG+T G E+SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:    9 GMLPSLLQAESEGQGQEGSAAL-QDGAAGAAEMGVPPSSHRELCPAVVVREGNTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSL 97
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BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            G LP LLQA+ +G+GQE S         G  +  + PSSHREL+PAV V EGDT G + SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:  183 GMLPSLLQAESEGQGQEGSAALQE-GAAGAAELGVPPSSHRELYPAVVVREGDTAGGKTSSRPGVEGALVRDVEVPAAGGFGAFQDTNSL 271
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BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5L4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            G L  LLQA+ DG+GQE S         G  +  + PSSHREL+PAV V EGDT G E+SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:  206 GVLQSLLQAESDGQGQEGSAALQE-GAAGAAELGVPPSSHRELYPAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSL 294
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BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5K5T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-15
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            G LP LLQA+ + +GQE S         G  +  + PSSHREL+PAV V EGDT G E+SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:  133 GMLPSLLQAESEWQGQEGSAALQE-GAAGAAELGVPPSSHRELYPAVVVWEGDTAGGESSSRPGVEGALVRDVEVPAAGGFGASQDTNSL 221
[Close]
BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Match: A0A6H5L352_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L352_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.910e-13
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   22 QAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVSEGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATL 270
            +A+ +G+GQE S         G  +  + PSSHREL PAV V EGDT G E+SSRPGVEGALVR ++ P  GG G  Q+  +L
Sbjct:   44 RAESEGQGQEGSAALQE-GAAGAAELGVPPSSHRELCPAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSL 125
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KN73_9PHAE1.900e-1753.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K498_9PHAE5.560e-1752.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M5_9PHAE2.580e-1652.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4F6_9PHAE2.580e-1653.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5T0_9PHAE1.280e-1552.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L352_9PHAE4.910e-1350.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:513006..513309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.9688966-CDS-C-linearis_contig85:513005..5133081622930642.9688966-CDS-C-linearis_contig85:513005..513308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 513006..513308 +
1690881175.093839-CDS-C-linearis_contig85:513005..5133081690881175.093839-CDS-C-linearis_contig85:513005..513308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 513006..513308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16174.1prot_C-linearis_contig85.16174.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 513006..513308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16174.1

>prot_C-linearis_contig85.16174.1 ID=prot_C-linearis_contig85.16174.1|Name=mRNA_C-linearis_contig85.16174.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
GKLPLLLQAKPDGRGQEESGGTGRCRRCGEIDGYLSPSSHRELHPAVGVS
EGDTTGAENSSRPGVEGALVRALKAPTGGGVGGLQNIATLSVGSLAVLAQ
C
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mRNA from alignment at C-linearis_contig85:513006..513309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16174.1 ID=mRNA_C-linearis_contig85.16174.1|Name=mRNA_C-linearis_contig85.16174.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=304bp|location=Sequence derived from alignment at C-linearis_contig85:513006..513309+ (Chordaria linearis ClinC8C monoicous)
GGCAAGCTGCCGTTGCTTCTGCAGGCCAAGCCGGATGGGCGAGGCCAAGA
GGAGTCGGGCGGCACTGGAAGGTGTCGCAGGTGCGGGGAGATTGATGGGT
ACCTCTCCCCGAGCAGCCACCGAGAGCTGCATCCTGCGGTGGGCGTCAGT
GAAGGCGACACCACTGGAGCAGAGAACAGCAGTAGACCGGGCGTGGAAGG
TGCCCTGGTGCGAGCTTTGAAAGCTCCTACTGGAGGTGGGGTTGGTGGTT
TACAGAACATCGCAACTCTCTCCGTCGGAAGTTTGGCAGTTCTGGCACAG
TGTA
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Coding sequence (CDS) from alignment at C-linearis_contig85:513006..513309+

>mRNA_C-linearis_contig85.16174.1 ID=mRNA_C-linearis_contig85.16174.1|Name=mRNA_C-linearis_contig85.16174.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig85:513006..513309+ (Chordaria linearis ClinC8C monoicous)
GGCAAGCTGCCGTTGCTTCTGCAGGCCAAGCCGGATGGGCGAGGCCAAGA
GGAGTCGGGCGGCACTGGAAGGTGTCGCAGGTGCGGGGAGATTGATGGGT
ACCTCTCCCCGAGCAGCCACCGAGAGCTGCATCCTGCGGTGGGCGTCAGT
GAAGGCGACACCACTGGAGCAGAGAACAGCAGTAGACCGGGCGTGGAAGG
TGCCCTGGTGCGAGCTTTGAAAGCTCCTACTGGAGGTGGGGTTGGTGGTT
TACAGAACATCGCAACTCTCTCCGTCGGAAGTTTGGCAGTTCTGGCACAG
TGTGGCAAGCTGCCGTTGCTTCTGCAGGCCAAGCCGGATGGGCGAGGCCA
AGAGGAGTCGGGCGGCACTGGAAGGTGTCGCAGGTGCGGGGAGATTGATG
GGTACCTCTCCCCGAGCAGCCACCGAGAGCTGCATCCTGCGGTGGGCGTC
AGTGAAGGCGACACCACTGGAGCAGAGAACAGCAGTAGACCGGGCGTGGA
AGGTGCCCTGGTGCGAGCTTTGAAAGCTCCTACTGGAGGTGGGGTTGGTG
GTTTACAGAACATCGCAACTCTCTCCGTCGGAAGTTTGGCAGTTCTGGCA
CAGTGT
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