mRNA_C-linearis_contig85.16163.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16163.1
Unique NamemRNA_C-linearis_contig85.16163.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:398307..399003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size697
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.8956897-UTR-C-linearis_contig85:398306..3984211622930642.8956897-UTR-C-linearis_contig85:398306..398421Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 398307..398421 +
1690881175.073767-UTR-C-linearis_contig85:398306..3984211690881175.073767-UTR-C-linearis_contig85:398306..398421Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 398307..398421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.914111-CDS-C-linearis_contig85:398421..3990031622930642.914111-CDS-C-linearis_contig85:398421..399003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 398422..399003 +
1690881175.0845027-CDS-C-linearis_contig85:398421..3990031690881175.0845027-CDS-C-linearis_contig85:398421..399003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 398422..399003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16163.1prot_C-linearis_contig85.16163.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 398422..399003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16163.1

>prot_C-linearis_contig85.16163.1 ID=prot_C-linearis_contig85.16163.1|Name=mRNA_C-linearis_contig85.16163.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=194bp
MLGVPWLGFSEEVQSRHLDPFEQRRIFDAIRESRAPPETIRHRCNQFHTL
GAADPLVRMTGGKVSQQVSRLVAYSTNQASRRHIINIDINSTKNQKLKRK
AKQRQPSQAKPAIRHAEAAAKEEKKSNKKHNLVPVHDPLHLLRRHGGPGR
PDADTPPSYPRRHSPHGDPGAGVERHAPPHPPVRSSRAPGPRLR
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mRNA from alignment at C-linearis_contig85:398307..399003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16163.1 ID=mRNA_C-linearis_contig85.16163.1|Name=mRNA_C-linearis_contig85.16163.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=697bp|location=Sequence derived from alignment at C-linearis_contig85:398307..399003+ (Chordaria linearis ClinC8C monoicous)
CCCACAATCAACCAGTGGTGAAAGATCGAACTTATGTAGTCATGGCCGAG
AAAATAGGCAGGTACATATCCCCAGTTCGCGCGGCTGGACTACACAACAA
ATTGCGAACTGCTAGATGCTGGGTGTACCTTGGTTGGGTTTCAGCGAAGA
GGTTCAATCAAGGCACCTCGATCCTTTTGAGCAACGAAGGATCTTCGACG
CAATTCGTGAGTCGCGCGCGCCCCCCGAGACCATTCGACACCGTTGTAAT
CAATTCCACACGCTCGGTGCGGCCGACCCACTTGTTCGCATGACCGGCGG
CAAGGTGAGCCAACAAGTAAGTCGCCTAGTCGCCTACTCGACCAACCAGG
CCAGCCGACGACACATCATCAACATCGACATCAACAGCACCAAGAACCAA
AAACTCAAAAGAAAAGCAAAACAGCGGCAACCAAGCCAAGCCAAGCCAGC
AATACGACACGCAGAAGCAGCAGCAAAAGAAGAAAAAAAAAGCAACAAAA
AACACAACCTAGTTCCCGTTCACGATCCGCTCCATCTCCTCCGCCGTCAT
GGGGGTCCCGGTAGACCCGATGCCGACACGCCCCCCTCCTACCCGCGCCG
CCACTCGCCCCACGGGGACCCTGGCGCGGGGGTCGAGCGCCATGCCCCCC
CCCACCCCCCCGTTCGCAGCTCTCGCGCGCCGGGCCCCCGGCTGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig85:398307..399003+

>mRNA_C-linearis_contig85.16163.1 ID=mRNA_C-linearis_contig85.16163.1|Name=mRNA_C-linearis_contig85.16163.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at C-linearis_contig85:398307..399003+ (Chordaria linearis ClinC8C monoicous)
ATGCTGGGTGTACCTTGGTTGGGTTTCAGCGAAGAGGTTCAATCAAGGCA
CCTCGATCCTTTTGAGCAACGAAGGATCTTCGACGCAATTCGTGAGTCGC
GCGCGCCCCCCGAGACCATTCGACACCGTTGTAATCAATTCCACACGCTC
GGTGCGGCCGACCCACTTGTTCGCATGACCGGCGGCAAGGTGAGCCAACA
AGTAAGTCGCCTAGTCGCCTACTCGACCAACCAGGCCAGCCGACGACACA
TCATCAACATCGACATCAACAGCACCAAGAACCAAAAACTCAAAAGAAAA
GCAAAACAGCGGCAACCAAGCCAAGCCAAGCCAGCAATACGACACGCAGA
AGCAGCAGCAAAAGAAGAAAAAAAAAGCAACAAAAAACACAACCTAGTTC
CCGTTCACGATCCGCTCCATCTCCTCCGCCGTCATGGGGGTCCCGGTAGA
CCCGATGCCGACACGCCCCCCTCCTACCCGCGCCGCCACTCGCCCCACGG
GGACCCTGGCGCGGGGGTCGAGCGCCATGCCCCCCCCCACCCCCCCGTTC
GCAGCTCTCGCGCGCCGGGCCCCCGGCTGCGGATGCTGGGTGTACCTTGG
TTGGGTTTCAGCGAAGAGGTTCAATCAAGGCACCTCGATCCTTTTGAGCA
ACGAAGGATCTTCGACGCAATTCGTGAGTCGCGCGCGCCCCCCGAGACCA
TTCGACACCGTTGTAATCAATTCCACACGCTCGGTGCGGCCGACCCACTT
GTTCGCATGACCGGCGGCAAGGTGAGCCAACAAGTAAGTCGCCTAGTCGC
CTACTCGACCAACCAGGCCAGCCGACGACACATCATCAACATCGACATCA
ACAGCACCAAGAACCAAAAACTCAAAAGAAAAGCAAAACAGCGGCAACCA
AGCCAAGCCAAGCCAGCAATACGACACGCAGAAGCAGCAGCAAAAGAAGA
AAAAAAAAGCAACAAAAAACACAACCTAGTTCCCGTTCACGATCCGCTCC
ATCTCCTCCGCCGTCATGGGGGTCCCGGTAGACCCGATGCCGACACGCCC
CCCTCCTACCCGCGCCGCCACTCGCCCCACGGGGACCCTGGCGCGGGGGT
CGAGCGCCATGCCCCCCCCCACCCCCCCGTTCGCAGCTCTCGCGCGCCGG
GCCCCCGGCTGCGG
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