mRNA_C-linearis_contig85.16162.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16162.1
Unique NamemRNA_C-linearis_contig85.16162.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5KMQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.550e-47
Identity = 106/181 (58.56%), Postives = 122/181 (67.40%), Query Frame = 1 
Query:    4 LEGDGKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAE------EGSASAGEAEDTGGASGLGDLM---ERIEANVRLSGKDTDTGDEPSVDGGGDVGGDLDLDDKQYGDFQGDVDNAGGPDGEPEVSPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            LE     GDDM DSA EVG  G ++AD+GS   DDFG         +GSAS G  E+TGGA GLG+LM   E +E  V  SG+DTD GDE S++ GG V GD  L+D+ Y DFQGD+D  GGP  EPEV    E GGG S AIPR+E LH MAPSFASSTTVEGG EKLR+NT+A G PFY
Sbjct:   90 LEAQESEGDDMPDSAQEVGAGGLESADNGSGEGDDFGGXXXXXXXXDGSASGGAHEETGGARGLGNLMGRVEEVERTVESSGRDTDAGDEYSMEDGGGVEGDDGLNDEGYDDFQGDIDYEGGPV-EPEVFLLPEDGGGTSSAIPRLEVLHTMAPSFASSTTVEGGPEKLRYNTKAAGSPFY 269
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.250e-43
Identity = 104/181 (57.46%), Postives = 120/181 (66.30%), Query Frame = 1 
Query:    4 LEGDGKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAE------EGSASAGEAEDTGGASGLGDLM---ERIEANVRLSGKDTDTGDEPSVDGGGDVGGDLDLDDKQYGDFQGDVDNAGGPDGEPEVSPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            LE     GDDM DSA+EVG  G + AD+GS   DD           +GSAS G  E+TGGA GLG+LM   E +E  V  SG+DTD GDE S++ GG V GD  L+D+ Y DFQGD+D  GGP  EPEV    E GGG S AIPR+E LH MAPSFASSTTVEGG EKLR+NT+A G PFY
Sbjct:   78 LEAQESEGDDMPDSAHEVGAGGLEGADNGSGEGDDXXXXXXXXXXXDGSASGGAHEETGGARGLGNLMGRVEEVERTVESSGRDTDAGDEYSMEDGGGVEGDDGLNDEGYDDFQGDIDYEGGPV-EPEVFLLPEDGGGTSSAIPRLEVLHTMAPSFASSTTVEGGPEKLRYNTKAAGSPFY 257
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5KE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE55_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.120e-31
Identity = 87/177 (49.15%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:   16 GKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAEEGSASAG--EAEDTGGASGLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVG-----GDLDLDDKQYGDFQGDVDNAGGPDGEPEV--SPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            G  GDD+ DS  EVG              DDFG A + S SA   + EDTG   GL  L+ERIE N+ +S + T T DE +VD GGD+      GD+ LDD++Y DFQG+VDN  G DG PEV   P H GG   + + PR+ +LH M PS+ASS TVEGG EKLR NT+A+G  FY
Sbjct:   28 GSHGDDVPDSTSEVG------------AVDDFGGAGDDSRSADGKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYNDFQGNVDNR-GTDGAPEVFEPPGHNGG---ASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFY 188
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.660e-29
Identity = 87/181 (48.07%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:    4 LEGDGKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAEEGSASAG--EAEDTGGASGLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVG-----GDLDLDDKQYGDFQGDVDNAGGPDGEPEV--SPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            ++  G  GDD+ DS  EVG              DDFG A + S SA   + EDTG   GL  L+ERIE N+ +S + T T DE +VD GGD+      GD+ LDD++Y DFQG+VDN  G DG PEV   P H GG   + + PR+ +LH M PS+ASS TVEGG EKLR NT+A+G  FY
Sbjct:   31 VDAQGSHGDDVPDSTSEVG------------AVDDFGGAGDDSRSADGKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYDDFQGNVDNR-GTDGAPEVFEPPGHNGG---ASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFY 195
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.380e-29
Identity = 87/177 (49.15%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:   16 GKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAEEGSASAG--EAEDTGGASGLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVG-----GDLDLDDKQYGDFQGDVDNAGGPDGEPEV--SPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            G  GDD+ DS  EVG              DDFG A + S SA   + EDTG   GL  L+ERIE N+ +S + T T DE +VD GGD+      GD+ LDD++Y DFQG+VDN  G DG PEV   P H GG   + + PR+ +LH M PS+ASS TVEGG EKLR NT+A+G  FY
Sbjct:   44 GSHGDDVPDSTSEVG------------AVDDFGGAGDDSRSADGKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYDDFQGNVDNR-GTDGAPEVFEPPGHNGG---ASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFY 204
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.760e-26
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  172 GLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVGGDLDLDDKQYGDFQGDVDNAGGPDGEPEVSPSHEGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            G+ D+M RIE N+ + G +T T DE      GD   D+ LDD++Y DFQGDVDN G    EPEV    E GGGAS ++PR++ LH MAPSFAS  T EGG EKLRHNT+ARG PFY
Sbjct:  162 GINDVMARIEKNLAVIGTNTGTDDEDGSSDCGDEHSDIGLDDERYDDFQGDVDNRGSCS-EPEVFLLPEDGGGAS-SVPRLDVLHTMAPSFASCKTAEGGPEKLRHNTKARGSPFY 275
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.070e-23
Identity = 79/183 (43.17%), Postives = 104/183 (56.83%), Query Frame = 1 
Query:    4 LEGDGKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAEEGSASAGEAEDTGGAS--GLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVG-----GDLDLDDKQYGDFQGDVDNAGGPDGEPEVSPSHE-----GGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPF 516
            ++ +G  GD + DS  +VG              DDFG A + S SA   ED    +  GL DL+ RIE ++ +SG+ T T +E +V+ GGD+      GD+ LDD++Y DFQG+VDN  G DG PEV    E     G  G + + PR+  LH M PS+ASS TVEGG +KLR NTRA   PF
Sbjct:   24 IQDEGSHGDKVPDSTSDVG------------AGDDFGGAGDDSRSADGREDDEKCADGGLEDLLARIEESLGVSGEGTGTENEGTVEAGGDMDSGGEEGDIGLDDERYDDFQGNVDNR-GTDGTPEVVLPPEVFLPPGQNGGASSAPRLNWLHTMTPSYASSKTVEGGADKLRENTRAGRSPF 193
[Close]
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.120e-10
Identity = 52/134 (38.81%), Postives = 68/134 (50.75%), Query Frame = 1 
Query:  166 ASGLGDLMERIEANVRLSGKDTD------TGDEPSVDGGGDVGGDLDLDDKQYGDFQGDVDNAGGPDGEPEVSPSH----------EGGGGASFAIPRVEQLHAMAPSFASSTTVEGGHEKLRHNTRARGCPFY 519
            A GL  LM+R++A + +     D      +GD    DGG   GG  D  D +YG   G+ D  GG D  P V   H           GGGG     P + +LH +APS+A+S+T+EGG E LR NT+A G  FY
Sbjct:   44 AGGLSALMDRVDAQLNIGRNFPDDEPSLNSGDHAECDGGAVSGGAGD--DGEYG---GEGDQCGGIDIYPTVDDQHPQHVNPAPDTRGGGGG--GTPSLAELHTLAPSYATSSTLEGGPENLRFNTKATGSSFY 170
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMQ9_9PHAE2.550e-4758.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE2.250e-4357.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE55_9PHAE8.120e-3149.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE4.660e-2948.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE8.380e-2949.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE5.760e-2656.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE7.070e-2343.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC0_9PHAE6.120e-1038.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:382624..383144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.837559-CDS-C-linearis_contig85:382623..3831421622930642.837559-CDS-C-linearis_contig85:382623..383142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 382624..383142 +
1690881175.0601115-CDS-C-linearis_contig85:382623..3831421690881175.0601115-CDS-C-linearis_contig85:382623..383142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 382624..383142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16162.1prot_C-linearis_contig85.16162.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 382624..383142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16162.1

>prot_C-linearis_contig85.16162.1 ID=prot_C-linearis_contig85.16162.1|Name=mRNA_C-linearis_contig85.16162.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
GLEGDGKRGDDMRDSAYEVGGDGFDNADDGSARWDDFGDAEEGSASAGEA
EDTGGASGLGDLMERIEANVRLSGKDTDTGDEPSVDGGGDVGGDLDLDDK
QYGDFQGDVDNAGGPDGEPEVSPSHEGGGGASFAIPRVEQLHAMAPSFAS
STTVEGGHEKLRHNTRARGCPFY
back to top

mRNA from alignment at C-linearis_contig85:382624..383144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16162.1 ID=mRNA_C-linearis_contig85.16162.1|Name=mRNA_C-linearis_contig85.16162.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=521bp|location=Sequence derived from alignment at C-linearis_contig85:382624..383144+ (Chordaria linearis ClinC8C monoicous)
GGGTTGGAAGGAGACGGGAAGCGAGGAGATGATATGCGGGACAGCGCATA
CGAAGTAGGAGGGGATGGTTTCGACAATGCGGACGACGGGTCAGCGAGAT
GGGACGATTTTGGTGACGCTGAGGAGGGATCAGCTAGCGCTGGAGAAGCT
GAGGATACCGGCGGCGCCAGTGGTCTGGGCGATCTCATGGAGCGGATAGA
GGCTAATGTCAGGTTGAGCGGAAAAGACACGGACACAGGCGACGAGCCCA
GCGTTGACGGCGGGGGAGACGTAGGAGGCGACCTCGATTTGGACGACAAG
CAATACGGCGATTTCCAGGGTGACGTGGACAATGCAGGGGGGCCTGATGG
GGAACCTGAGGTATCCCCATCACATGAAGGTGGTGGGGGCGCATCATTTG
CCATCCCCAGAGTAGAACAGCTTCACGCGATGGCGCCGTCTTTTGCATCG
AGTACGACGGTGGAGGGAGGGCACGAAAAGTTGCGACACAACACCAGGGC
GAGGGGTTGTCCATTCTACCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig85:382624..383144+

>mRNA_C-linearis_contig85.16162.1 ID=mRNA_C-linearis_contig85.16162.1|Name=mRNA_C-linearis_contig85.16162.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig85:382624..383144+ (Chordaria linearis ClinC8C monoicous)
GGGTTGGAAGGAGACGGGAAGCGAGGAGATGATATGCGGGACAGCGCATA
CGAAGTAGGAGGGGATGGTTTCGACAATGCGGACGACGGGTCAGCGAGAT
GGGACGATTTTGGTGACGCTGAGGAGGGATCAGCTAGCGCTGGAGAAGCT
GAGGATACCGGCGGCGCCAGTGGTCTGGGCGATCTCATGGAGCGGATAGA
GGCTAATGTCAGGTTGAGCGGAAAAGACACGGACACAGGCGACGAGCCCA
GCGTTGACGGCGGGGGAGACGTAGGAGGCGACCTCGATTTGGACGACAAG
CAATACGGCGATTTCCAGGGTGACGTGGACAATGCAGGGGGGCCTGATGG
GGAACCTGAGGTATCCCCATCACATGAAGGTGGTGGGGGCGCATCATTTG
CCATCCCCAGAGTAGAACAGCTTCACGCGATGGCGCCGTCTTTTGCATCG
AGTACGACGGTGGAGGGAGGGCACGAAAAGTTGCGACACAACACCAGGGC
GAGGGGTTGTCCATTCTACGGGTTGGAAGGAGACGGGAAGCGAGGAGATG
ATATGCGGGACAGCGCATACGAAGTAGGAGGGGATGGTTTCGACAATGCG
GACGACGGGTCAGCGAGATGGGACGATTTTGGTGACGCTGAGGAGGGATC
AGCTAGCGCTGGAGAAGCTGAGGATACCGGCGGCGCCAGTGGTCTGGGCG
ATCTCATGGAGCGGATAGAGGCTAATGTCAGGTTGAGCGGAAAAGACACG
GACACAGGCGACGAGCCCAGCGTTGACGGCGGGGGAGACGTAGGAGGCGA
CCTCGATTTGGACGACAAGCAATACGGCGATTTCCAGGGTGACGTGGACA
ATGCAGGGGGGCCTGATGGGGAACCTGAGGTATCCCCATCACATGAAGGT
GGTGGGGGCGCATCATTTGCCATCCCCAGAGTAGAACAGCTTCACGCGAT
GGCGCCGTCTTTTGCATCGAGTACGACGGTGGAGGGAGGGCACGAAAAGT
TGCGACACAACACCAGGGCGAGGGGTTGTCCATTCTAC
back to top